Wall clock time and date at job start Mon Mar 30 2020 01:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.71323 * 2 1 4 4 C 1.53291 * 109.68119 * 239.45356 * 2 1 3 5 5 H 1.09002 * 109.50982 * 172.60640 * 4 2 1 6 6 C 1.53000 * 109.50976 * 52.50994 * 4 2 1 7 7 O 1.42953 * 109.22628 * 292.58224 * 4 2 1 8 8 C 1.42961 * 114.17154 * 297.41977 * 7 4 2 9 9 C 1.52880 * 109.29639 * 62.44452 * 8 7 4 10 10 N 1.47147 * 108.60760 * 307.93867 * 9 8 7 11 11 S 1.65600 * 120.98129 * 230.49718 * 10 9 8 12 12 O 1.42107 * 104.27629 * 153.65069 * 11 10 9 13 13 O 1.42102 * 104.27841 * 25.79206 * 11 10 9 14 14 C 1.81404 * 104.45074 * 269.72032 * 11 10 9 15 15 C 1.53000 * 109.46946 * 180.02562 * 14 11 10 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 11 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46725 * 60.00093 * 20 18 16 22 22 H 1.48505 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00069 * 20 18 16 24 24 H 1.09005 * 109.47116 * 299.47021 * 1 2 3 25 25 H 1.08999 * 109.46447 * 59.46347 * 1 2 3 26 26 H 1.08997 * 109.47524 * 179.46818 * 1 2 3 27 27 H 1.09002 * 109.47387 * 59.99680 * 6 4 2 28 28 H 1.09000 * 109.47023 * 179.97438 * 6 4 2 29 29 H 1.08997 * 109.46797 * 299.99248 * 6 4 2 30 30 H 1.08998 * 109.51532 * 182.50508 * 8 7 4 31 31 H 1.09007 * 109.50927 * 302.65824 * 8 7 4 32 32 H 1.09000 * 109.61687 * 188.11622 * 9 8 7 33 33 H 1.08996 * 109.52191 * 67.70581 * 9 8 7 34 34 H 1.09002 * 109.47124 * 60.00022 * 14 11 10 35 35 H 1.09001 * 109.46975 * 300.00144 * 14 11 10 36 36 H 1.09001 * 109.47194 * 299.99756 * 15 14 11 37 37 H 1.08992 * 109.47399 * 59.99928 * 15 14 11 38 38 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0463 -0.7336 -1.2430 5 1 3.1283 -0.6195 -1.3099 6 6 1.3919 -0.1428 -2.4935 7 8 1.7168 -2.1209 -1.1417 8 6 2.3259 -2.7878 -0.0335 9 6 1.8289 -2.1603 1.2690 10 7 2.0256 -0.7040 1.1935 11 16 2.7881 0.1175 2.4125 12 8 3.3383 1.2615 1.7735 13 8 3.6260 -0.8559 3.0205 14 6 1.4507 0.5995 3.5393 15 6 2.0346 1.3757 4.7214 16 6 0.9236 1.7755 5.6578 17 1 -0.0969 1.5035 5.4321 18 6 1.2100 2.4885 6.8027 19 7 2.4528 2.8193 7.0777 20 14 -0.1673 2.9847 7.9630 21 1 -0.8571 1.7677 8.4614 22 1 0.3997 3.7370 9.1111 23 1 -1.1390 3.8433 7.2394 24 1 -0.3633 0.5056 0.8947 25 1 -0.3632 0.5222 -0.8852 26 1 -0.3634 -1.0276 -0.0095 27 1 1.6399 0.9160 -2.5677 28 1 1.7598 -0.6646 -3.3770 29 1 0.3102 -0.2589 -2.4268 30 1 2.0608 -3.8449 -0.0542 31 1 3.4090 -2.6820 -0.0955 32 1 2.3944 -2.5641 2.1088 33 1 0.7696 -2.3814 1.3989 34 1 0.9443 -0.2937 3.9052 35 1 0.7374 1.2296 3.0081 36 1 2.7482 0.7459 5.2528 37 1 2.5407 2.2689 4.3552 38 1 2.6543 3.3206 7.8833 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121963853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:24 Heat of formation + Delta-G solvation = -124.880038 kcal Electronic energy + Delta-G solvation = -20832.552064 eV Core-core repulsion = 17609.129374 eV Total energy + Delta-G solvation = -3223.422690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.78142 -36.74484 -35.53450 -35.07777 -33.91901 -33.61893 -31.18464 -28.95700 -28.33855 -25.65325 -24.53045 -23.24513 -21.59762 -20.05505 -18.49236 -17.77450 -16.76865 -16.62481 -16.05036 -15.52770 -15.41008 -14.99665 -14.72344 -14.52879 -13.82124 -13.49402 -13.23173 -13.00611 -12.56216 -12.47712 -12.09250 -11.99198 -11.83552 -11.76119 -11.67762 -11.64295 -11.23430 -11.08290 -11.04511 -10.99071 -10.55455 -10.40385 -10.39884 -10.13143 -9.76178 -9.30956 -8.67586 -8.52000 -6.14155 -4.20055 0.68912 2.90249 3.25939 3.30797 3.32607 3.60416 4.24271 4.36305 4.40949 4.57535 4.70571 4.87916 4.99534 5.03283 5.19160 5.20895 5.25894 5.34489 5.38827 5.47074 5.54967 5.64852 5.71563 5.71868 5.77923 5.82481 5.91162 6.15864 6.24438 6.46536 6.58386 7.05593 7.26941 7.32976 7.78427 8.15281 8.83052 9.44805 10.96848 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031348 B = 0.004651 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.991405 B = 6019.074678 C = 6250.840789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 H 0.110 0.890 4 C 0.083 3.917 5 H 0.063 0.937 6 C -0.146 4.146 7 O -0.376 6.376 8 C 0.053 3.947 9 C 0.082 3.918 10 N -1.005 6.005 11 S 2.588 3.412 12 O -0.963 6.963 13 O -0.964 6.964 14 C -0.586 4.586 15 C 0.028 3.972 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.901 3.099 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 -8.773 -16.515 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 H 0.128 0.872 4 C 0.023 3.977 5 H 0.081 0.919 6 C -0.204 4.204 7 O -0.295 6.295 8 C -0.025 4.025 9 C -0.043 4.043 10 N -0.842 5.842 11 S 2.688 3.312 12 O -0.954 6.954 13 O -0.954 6.954 14 C -0.720 4.720 15 C -0.011 4.011 16 C -0.561 4.561 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.728 3.272 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.201 1.201 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.573 -8.634 -16.480 18.781 hybrid contribution -1.198 0.391 1.150 1.706 sum -3.771 -8.243 -15.330 17.809 Atomic orbital electron populations 1.22174 0.94486 1.03062 1.02501 1.21670 0.95302 0.97296 0.84919 0.87218 1.22385 0.98853 0.81917 0.94518 0.91899 1.21848 1.01921 1.00724 0.95910 1.87901 1.72166 1.21736 1.47662 1.22803 0.97398 0.96686 0.85627 1.21992 1.02376 0.80027 0.99950 1.58179 1.76999 1.15695 1.33287 1.05770 0.77117 0.73808 0.74486 1.93525 1.76529 1.51449 1.73879 1.93525 1.64329 1.60256 1.77293 1.30485 1.16767 1.10755 1.13991 1.18965 0.97436 0.94836 0.89834 1.20958 0.93169 1.35940 1.05991 0.92101 1.25064 0.95824 0.95641 0.97883 1.69941 1.18007 1.38544 1.26375 0.86523 0.81803 0.78738 0.80169 1.20070 1.21036 1.20063 0.92007 0.91127 0.91537 0.90670 0.91731 0.91107 0.87842 0.92682 0.87822 0.90758 0.86249 0.86270 0.94902 0.94891 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.64 37.16 0.32 -1.39 16 2 C 0.11 1.41 2.88 -67.42 -0.19 1.22 16 3 H 0.11 1.41 6.88 -51.93 -0.36 1.06 16 4 C 0.08 0.93 3.10 -26.58 -0.08 0.84 16 5 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.15 -1.25 9.01 37.16 0.33 -0.92 16 7 O -0.38 -4.37 10.01 -35.23 -0.35 -4.72 16 8 C 0.05 0.56 6.97 37.10 0.26 0.82 16 9 C 0.08 0.96 6.25 -3.75 -0.02 0.94 16 10 N -1.01 -14.05 2.97 -106.27 -0.32 -14.36 16 11 S 2.59 47.00 5.47 -107.50 -0.59 46.41 16 12 O -0.96 -19.87 16.62 -57.54 -0.96 -20.83 16 13 O -0.96 -19.82 16.61 -57.54 -0.96 -20.77 16 14 C -0.59 -11.29 6.12 37.16 0.23 -11.06 16 15 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 16 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.61 6.42 -51.93 -0.33 0.27 16 26 H 0.07 0.69 7.24 -51.93 -0.38 0.32 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.57 6.38 -51.93 -0.33 0.24 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.10 1.24 6.87 -51.93 -0.36 0.88 16 33 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 34 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 35 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -34.02 317.29 -8.30 -42.32 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.92 Total: -1.09 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 0.29 Total: -22.13 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.42 Total: -40.10 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -2.26 Total: -46.33 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 47.00 SS G_CDS: -0.59 Total: 46.41 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.02 -8.30 -42.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121963853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.559 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds