Wall clock time and date at job start Mon Mar 30 2020 01:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.71323 * 2 1 4 4 C 1.53291 * 109.68119 * 239.45356 * 2 1 3 5 5 H 1.09002 * 109.50982 * 172.60640 * 4 2 1 6 6 C 1.53000 * 109.50976 * 52.50994 * 4 2 1 7 7 O 1.42953 * 109.22628 * 292.58224 * 4 2 1 8 8 C 1.42961 * 114.17154 * 297.41977 * 7 4 2 9 9 C 1.52880 * 109.29639 * 62.44452 * 8 7 4 10 10 N 1.47147 * 108.60760 * 307.93867 * 9 8 7 11 11 S 1.65600 * 120.98129 * 230.49718 * 10 9 8 12 12 O 1.42107 * 104.27629 * 153.65069 * 11 10 9 13 13 O 1.42102 * 104.27841 * 25.79206 * 11 10 9 14 14 C 1.81404 * 104.45074 * 269.72032 * 11 10 9 15 15 C 1.53000 * 109.46946 * 180.02562 * 14 11 10 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 11 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46725 * 60.00093 * 20 18 16 22 22 H 1.48505 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00069 * 20 18 16 24 24 H 1.09005 * 109.47116 * 299.47021 * 1 2 3 25 25 H 1.08999 * 109.46447 * 59.46347 * 1 2 3 26 26 H 1.08997 * 109.47524 * 179.46818 * 1 2 3 27 27 H 1.09002 * 109.47387 * 59.99680 * 6 4 2 28 28 H 1.09000 * 109.47023 * 179.97438 * 6 4 2 29 29 H 1.08997 * 109.46797 * 299.99248 * 6 4 2 30 30 H 1.08998 * 109.51532 * 182.50508 * 8 7 4 31 31 H 1.09007 * 109.50927 * 302.65824 * 8 7 4 32 32 H 1.09000 * 109.61687 * 188.11622 * 9 8 7 33 33 H 1.08996 * 109.52191 * 67.70581 * 9 8 7 34 34 H 1.09002 * 109.47124 * 60.00022 * 14 11 10 35 35 H 1.09001 * 109.46975 * 300.00144 * 14 11 10 36 36 H 1.09001 * 109.47194 * 299.99756 * 15 14 11 37 37 H 1.08992 * 109.47399 * 59.99928 * 15 14 11 38 38 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0463 -0.7336 -1.2430 5 1 3.1283 -0.6195 -1.3099 6 6 1.3919 -0.1428 -2.4935 7 8 1.7168 -2.1209 -1.1417 8 6 2.3259 -2.7878 -0.0335 9 6 1.8289 -2.1603 1.2690 10 7 2.0256 -0.7040 1.1935 11 16 2.7881 0.1175 2.4125 12 8 3.3383 1.2615 1.7735 13 8 3.6260 -0.8559 3.0205 14 6 1.4507 0.5995 3.5393 15 6 2.0346 1.3757 4.7214 16 6 0.9236 1.7755 5.6578 17 1 -0.0969 1.5035 5.4321 18 6 1.2100 2.4885 6.8027 19 7 2.4528 2.8193 7.0777 20 14 -0.1673 2.9847 7.9630 21 1 -0.8571 1.7677 8.4614 22 1 0.3997 3.7370 9.1111 23 1 -1.1390 3.8433 7.2394 24 1 -0.3633 0.5056 0.8947 25 1 -0.3632 0.5222 -0.8852 26 1 -0.3634 -1.0276 -0.0095 27 1 1.6399 0.9160 -2.5677 28 1 1.7598 -0.6646 -3.3770 29 1 0.3102 -0.2589 -2.4268 30 1 2.0608 -3.8449 -0.0542 31 1 3.4090 -2.6820 -0.0955 32 1 2.3944 -2.5641 2.1088 33 1 0.7696 -2.3814 1.3989 34 1 0.9443 -0.2937 3.9052 35 1 0.7374 1.2296 3.0081 36 1 2.7482 0.7459 5.2528 37 1 2.5407 2.2689 4.3552 38 1 2.6543 3.3206 7.8833 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121963853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:24 Heat of formation + Delta-G solvation = -150.061048 kcal Electronic energy + Delta-G solvation = -20833.643994 eV Core-core repulsion = 17609.129374 eV Total energy + Delta-G solvation = -3224.514620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69451 -38.31344 -37.09754 -36.08891 -35.92232 -34.49588 -33.15673 -29.75152 -29.29267 -27.62435 -25.45324 -24.18540 -23.45927 -21.11739 -19.74327 -19.22401 -18.47885 -17.80162 -17.18622 -16.98662 -16.62742 -16.47522 -16.08252 -15.71413 -15.18861 -14.85253 -14.45045 -14.14639 -13.89787 -13.76395 -13.39662 -13.26410 -13.19016 -12.98928 -12.92706 -12.83389 -12.72910 -12.63201 -12.32777 -12.25943 -12.18479 -11.86358 -11.79810 -11.42645 -11.15347 -11.04834 -10.65742 -9.76480 -8.27558 -6.42231 -0.79113 1.40092 1.43578 1.51839 1.61483 2.36975 2.76631 2.80501 3.05467 3.07879 3.55160 3.73417 3.98962 4.00064 4.04103 4.14423 4.19224 4.34594 4.40855 4.52456 4.57836 4.70095 4.74417 4.85298 4.90154 5.00225 5.03762 5.12554 5.23056 5.23303 5.37318 5.40878 5.57223 5.65910 6.03672 6.20038 6.70952 7.28242 8.84547 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031348 B = 0.004651 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.991405 B = 6019.074678 C = 6250.840789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 H 0.100 0.900 4 C 0.080 3.920 5 H 0.051 0.949 6 C -0.143 4.143 7 O -0.379 6.379 8 C 0.052 3.948 9 C 0.074 3.926 10 N -0.997 5.997 11 S 2.610 3.390 12 O -0.992 6.992 13 O -0.991 6.991 14 C -0.584 4.584 15 C 0.021 3.979 16 C -0.541 4.541 17 H 0.075 0.925 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.263 1.263 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.005 0.995 37 H 0.005 0.995 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 -9.644 -17.631 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.001 4.001 3 H 0.118 0.882 4 C 0.021 3.979 5 H 0.069 0.931 6 C -0.200 4.200 7 O -0.297 6.297 8 C -0.027 4.027 9 C -0.051 4.051 10 N -0.836 5.836 11 S 2.710 3.290 12 O -0.983 6.983 13 O -0.982 6.982 14 C -0.716 4.716 15 C -0.017 4.017 16 C -0.580 4.580 17 H 0.094 0.906 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.187 1.187 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.152 0.848 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.981 -9.507 -17.596 20.611 hybrid contribution -0.417 0.604 1.409 1.589 sum -5.398 -8.902 -16.187 19.246 Atomic orbital electron populations 1.22178 0.92621 1.03667 1.03419 1.21953 0.96801 0.96886 0.84414 0.88178 1.22478 0.98527 0.81918 0.95020 0.93070 1.21868 1.02254 1.01241 0.94656 1.87907 1.72169 1.21776 1.47891 1.22950 0.96972 0.98112 0.84617 1.22301 1.03904 0.78226 1.00681 1.57834 1.76804 1.16672 1.32305 1.04806 0.76659 0.73093 0.74476 1.93479 1.77305 1.53066 1.74410 1.93481 1.65430 1.60872 1.78380 1.30381 1.17712 1.11194 1.12343 1.18816 0.96853 0.94140 0.91937 1.21471 0.94226 1.35754 1.06505 0.90645 1.26119 0.98472 0.95567 0.99937 1.70093 1.20539 1.39584 1.27180 0.85357 0.78439 0.78799 0.77621 1.18748 1.20900 1.18729 0.92390 0.88962 0.91043 0.89654 0.91037 0.90160 0.84770 0.93504 0.88269 0.88432 0.84129 0.84257 0.97630 0.97638 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.64 71.98 0.62 -2.30 16 2 C 0.11 2.43 2.88 44.96 0.13 2.56 16 3 H 0.10 2.51 6.88 -2.39 -0.02 2.49 16 4 C 0.08 1.65 3.10 30.69 0.10 1.75 16 5 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 6 C -0.14 -2.08 9.01 71.98 0.65 -1.43 16 7 O -0.38 -7.86 10.01 -148.98 -1.49 -9.35 16 8 C 0.05 0.97 6.97 71.94 0.50 1.47 16 9 C 0.07 1.58 6.25 86.22 0.54 2.12 16 10 N -1.00 -26.75 2.97 -490.12 -1.46 -28.20 16 11 S 2.61 95.73 5.47 -56.49 -0.31 95.42 16 12 O -0.99 -41.91 16.62 -127.65 -2.12 -44.03 16 13 O -0.99 -41.58 16.61 -127.65 -2.12 -43.70 16 14 C -0.58 -22.39 6.12 71.98 0.44 -21.95 16 15 C 0.02 1.13 4.98 29.85 0.15 1.28 16 16 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 17 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 20 Si 0.97 43.12 29.54 68.60 2.03 45.14 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 24 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.09 1.29 6.42 -2.39 -0.02 1.27 16 26 H 0.07 1.25 7.24 -2.39 -0.02 1.23 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.02 6.38 -2.39 -0.02 1.01 16 30 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.10 2.25 6.87 -2.39 -0.02 2.23 16 33 H 0.10 1.67 7.69 -2.39 -0.02 1.65 16 34 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 35 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 36 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -74.35 317.29 -0.33 -74.69 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.03 Total: 12.72 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 3.82 Total: -45.98 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -1.17 Total: -84.91 kcal Atomic # 8 Polarization: -91.36 SS G_CDS: -5.73 Total: -97.09 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 95.73 SS G_CDS: -0.31 Total: 95.42 kcal Total: -74.35 -0.33 -74.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121963853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.375 kcal (2) G-P(sol) polarization free energy of solvation -74.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds