Wall clock time and date at job start Mon Mar 30 2020 01:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.51195 * 2 1 4 4 O 1.42964 * 109.51288 * 120.09920 * 2 1 3 5 5 C 1.42961 * 114.16872 * 182.55099 * 4 2 1 6 6 C 1.53297 * 109.22569 * 297.42550 * 5 4 2 7 7 N 1.47154 * 108.38341 * 52.29601 * 6 5 4 8 8 S 1.65604 * 120.97975 * 129.44356 * 7 6 5 9 9 O 1.42103 * 104.27620 * 347.73192 * 8 7 6 10 10 O 1.42098 * 104.27730 * 219.87623 * 8 7 6 11 11 C 1.81403 * 104.44776 * 103.80395 * 8 7 6 12 12 C 1.53007 * 109.46804 * 180.02562 * 11 8 7 13 13 C 1.50705 * 109.46646 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99966 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99608 * 180.02562 * 13 12 11 16 16 N 1.31506 * 119.99599 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00037 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47234 * 270.00041 * 17 15 13 19 19 H 1.48505 * 109.47262 * 29.99780 * 17 15 13 20 20 H 1.48498 * 109.47329 * 149.99985 * 17 15 13 21 21 C 1.47153 * 118.03987 * 309.71849 * 7 6 5 22 22 H 1.08999 * 109.67590 * 290.56199 * 21 7 6 23 23 C 1.52999 * 109.68258 * 170.00684 * 21 7 6 24 24 H 1.09001 * 109.46537 * 299.90018 * 1 2 3 25 25 H 1.08999 * 109.47008 * 59.89545 * 1 2 3 26 26 H 1.08994 * 109.47093 * 179.89983 * 1 2 3 27 27 H 1.08998 * 109.51767 * 177.49920 * 5 4 2 28 28 H 1.09004 * 109.50777 * 57.34807 * 5 4 2 29 29 H 1.09001 * 109.68258 * 292.57625 * 6 5 4 30 30 H 1.08996 * 109.71255 * 172.03936 * 6 5 4 31 31 H 1.08994 * 109.47320 * 59.99998 * 11 8 7 32 32 H 1.09001 * 109.46915 * 299.99730 * 11 8 7 33 33 H 1.09003 * 109.46997 * 59.99930 * 12 11 8 34 34 H 1.08996 * 109.47168 * 300.00011 * 12 11 8 35 35 H 0.97000 * 119.99750 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.47137 * 51.87935 * 23 21 7 37 37 H 1.08997 * 109.46842 * 171.88172 * 23 21 7 38 38 H 1.09004 * 109.46901 * 291.88214 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 8 2.0076 -0.6758 1.1658 5 6 3.4312 -0.6840 1.2957 6 6 4.0417 -1.4440 0.1126 7 7 3.5023 -0.8750 -1.1326 8 16 4.5077 -0.4163 -2.3659 9 8 5.8047 -0.4339 -1.7856 10 8 3.9386 0.7919 -2.8512 11 6 4.3439 -1.7372 -3.5985 12 6 5.2364 -1.4256 -4.8016 13 6 5.1007 -2.5233 -5.8253 14 1 4.4439 -3.3596 -5.6364 15 6 5.8158 -2.4603 -7.0024 16 7 5.6977 -3.4184 -7.8955 17 14 6.9532 -1.0148 -7.3281 18 1 6.1995 0.0626 -8.0182 19 1 7.4824 -0.5011 -6.0391 20 1 8.0821 -1.4566 -8.1857 21 6 2.0434 -0.7198 -1.2472 22 1 1.5746 -1.7011 -1.3204 23 6 1.7091 0.1059 -2.4911 24 1 -0.3632 0.5123 0.8909 25 1 -0.3633 0.5155 -0.8890 26 1 -0.3633 -1.0276 -0.0018 27 1 3.7091 -1.1768 2.2274 28 1 3.8022 0.3410 1.3004 29 1 3.7774 -2.4994 0.1786 30 1 5.1262 -1.3356 0.1262 31 1 3.3057 -1.8042 -3.9234 32 1 4.6483 -2.6861 -3.1568 33 1 6.2746 -1.3590 -4.4762 34 1 4.9324 -0.4767 -5.2434 35 1 6.2005 -3.3739 -8.7238 36 1 2.2106 -0.3240 -3.3581 37 1 0.6314 0.0979 -2.6536 38 1 2.0474 1.1322 -2.3476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121964163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:28 Heat of formation + Delta-G solvation = -111.034303 kcal Electronic energy + Delta-G solvation = -21017.669916 eV Core-core repulsion = 17794.847623 eV Total energy + Delta-G solvation = -3222.822294 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74635 -37.08291 -35.73431 -35.16622 -34.02474 -33.66118 -31.53042 -29.20453 -28.11079 -26.04461 -24.32831 -22.88471 -21.30636 -20.87907 -18.68664 -17.48201 -17.14624 -16.74972 -16.21023 -15.75848 -15.24904 -15.02619 -14.79690 -14.46994 -14.12613 -13.69827 -13.14898 -13.03260 -12.83176 -12.52129 -12.37617 -12.17790 -11.93458 -11.81327 -11.64634 -11.58462 -11.35045 -11.26246 -11.15827 -10.84022 -10.54847 -10.46127 -10.16207 -10.08392 -9.71075 -9.42316 -8.75418 -8.69036 -6.19158 -4.20642 0.56752 2.77956 3.24040 3.31605 3.35481 3.55629 4.09754 4.33214 4.36176 4.47586 4.57127 4.83952 4.93566 4.99410 5.08041 5.12232 5.24491 5.30432 5.36854 5.42481 5.47749 5.55895 5.58869 5.68649 5.78138 5.82756 5.94182 6.08095 6.23718 6.43507 6.51744 6.78400 6.90002 7.00342 7.51641 8.33916 8.81921 9.40358 10.93269 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.005083 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.757978 B = 5506.911971 C = 5745.540041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.065 0.935 4 O -0.378 6.378 5 C 0.053 3.947 6 C 0.081 3.919 7 N -1.006 6.006 8 S 2.587 3.413 9 O -0.967 6.967 10 O -0.959 6.959 11 C -0.583 4.583 12 C -0.006 4.006 13 C -0.520 4.520 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.869 3.131 18 H -0.271 1.271 19 H -0.262 1.262 20 H -0.281 1.281 21 C 0.124 3.876 22 H 0.082 0.918 23 C -0.183 4.183 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.032 0.968 34 H 0.028 0.972 35 H 0.267 0.733 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.594 5.750 16.994 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.021 3.979 3 H 0.083 0.917 4 O -0.297 6.297 5 C -0.026 4.026 6 C -0.045 4.045 7 N -0.843 5.843 8 S 2.687 3.313 9 O -0.957 6.957 10 O -0.949 6.949 11 C -0.716 4.716 12 C -0.045 4.045 13 C -0.559 4.559 14 H 0.096 0.904 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.695 3.305 18 H -0.196 1.196 19 H -0.187 1.187 20 H -0.207 1.207 21 C 0.018 3.982 22 H 0.100 0.900 23 C -0.241 4.241 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.114 6.403 16.965 19.866 hybrid contribution 0.558 0.007 -0.713 0.905 sum -7.556 6.409 16.252 19.034 Atomic orbital electron populations 1.21797 0.92345 1.03212 1.02869 1.22411 0.95312 0.95416 0.84718 0.91720 1.87917 1.20929 1.77669 1.43204 1.22897 0.81268 1.00224 0.98163 1.22142 1.00483 0.98201 0.83655 1.58084 1.16435 1.80194 1.29591 1.05797 0.72995 0.77511 0.74992 1.93507 1.38495 1.87787 1.75935 1.93601 1.77242 1.43080 1.81024 1.30384 1.10353 1.16917 1.13904 1.19410 0.94015 0.99128 0.91978 1.20843 1.27782 1.06752 1.00535 0.90412 1.24979 0.96279 0.96026 0.95752 1.69877 1.41897 1.32780 1.08725 0.86931 0.81190 0.83180 0.79186 1.19629 1.18669 1.20689 1.21603 0.79864 1.00170 0.96556 0.89982 1.22680 1.02720 1.03108 0.95601 0.91632 0.90427 0.91560 0.87737 0.92721 0.90638 0.87430 0.85621 0.85619 0.95017 0.95384 0.92342 0.91447 0.90779 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.38 37.16 0.35 -0.87 16 2 C 0.08 0.88 2.83 -26.79 -0.08 0.81 16 3 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 4 O -0.38 -4.41 10.39 -35.23 -0.37 -4.78 16 5 C 0.05 0.54 6.98 37.31 0.26 0.80 16 6 C 0.08 0.94 6.70 -3.53 -0.02 0.91 16 7 N -1.01 -13.66 3.26 -106.26 -0.35 -14.00 16 8 S 2.59 44.29 4.86 -107.50 -0.52 43.76 16 9 O -0.97 -18.82 16.33 -57.54 -0.94 -19.76 16 10 O -0.96 -17.82 13.66 -57.54 -0.79 -18.61 16 11 C -0.58 -10.76 5.86 37.16 0.22 -10.54 16 12 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 13 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 14 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.89 -26.97 13.96 55.43 0.77 -26.19 16 17 Si 0.87 21.39 27.47 -169.99 -4.67 16.73 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.12 1.49 3.13 -67.64 -0.21 1.27 16 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 23 C -0.18 -2.27 7.22 37.16 0.27 -2.00 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.55 6.91 -51.93 -0.36 0.19 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.11 1.27 6.64 -51.93 -0.34 0.93 16 31 H 0.13 2.11 6.73 -51.93 -0.35 1.76 16 32 H 0.13 2.15 8.14 -51.92 -0.42 1.73 16 33 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 34 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 36 H 0.07 0.93 4.86 -51.93 -0.25 0.67 16 37 H 0.07 0.70 7.13 -51.93 -0.37 0.33 16 38 H 0.10 1.35 6.50 -51.93 -0.34 1.01 16 LS Contribution 306.86 15.07 4.62 4.62 Total: -1.00 -33.44 306.86 -7.73 -41.17 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.74 Total: -0.23 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 0.24 Total: -22.71 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.43 Total: -40.20 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -2.09 Total: -43.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 44.29 SS G_CDS: -0.52 Total: 43.76 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.44 -7.73 -41.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121964163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.861 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds