Wall clock time and date at job start Mon Mar 30 2020 01:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.51195 * 2 1 4 4 O 1.42964 * 109.51288 * 120.09920 * 2 1 3 5 5 C 1.42961 * 114.16872 * 182.55099 * 4 2 1 6 6 C 1.53297 * 109.22569 * 297.42550 * 5 4 2 7 7 N 1.47154 * 108.38341 * 52.29601 * 6 5 4 8 8 S 1.65604 * 120.97975 * 129.44356 * 7 6 5 9 9 O 1.42103 * 104.27620 * 347.73192 * 8 7 6 10 10 O 1.42098 * 104.27730 * 219.87623 * 8 7 6 11 11 C 1.81403 * 104.44776 * 103.80395 * 8 7 6 12 12 C 1.53007 * 109.46804 * 180.02562 * 11 8 7 13 13 C 1.50705 * 109.46646 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99966 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99608 * 180.02562 * 13 12 11 16 16 N 1.31506 * 119.99599 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00037 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47234 * 270.00041 * 17 15 13 19 19 H 1.48505 * 109.47262 * 29.99780 * 17 15 13 20 20 H 1.48498 * 109.47329 * 149.99985 * 17 15 13 21 21 C 1.47153 * 118.03987 * 309.71849 * 7 6 5 22 22 H 1.08999 * 109.67590 * 290.56199 * 21 7 6 23 23 C 1.52999 * 109.68258 * 170.00684 * 21 7 6 24 24 H 1.09001 * 109.46537 * 299.90018 * 1 2 3 25 25 H 1.08999 * 109.47008 * 59.89545 * 1 2 3 26 26 H 1.08994 * 109.47093 * 179.89983 * 1 2 3 27 27 H 1.08998 * 109.51767 * 177.49920 * 5 4 2 28 28 H 1.09004 * 109.50777 * 57.34807 * 5 4 2 29 29 H 1.09001 * 109.68258 * 292.57625 * 6 5 4 30 30 H 1.08996 * 109.71255 * 172.03936 * 6 5 4 31 31 H 1.08994 * 109.47320 * 59.99998 * 11 8 7 32 32 H 1.09001 * 109.46915 * 299.99730 * 11 8 7 33 33 H 1.09003 * 109.46997 * 59.99930 * 12 11 8 34 34 H 1.08996 * 109.47168 * 300.00011 * 12 11 8 35 35 H 0.97000 * 119.99750 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.47137 * 51.87935 * 23 21 7 37 37 H 1.08997 * 109.46842 * 171.88172 * 23 21 7 38 38 H 1.09004 * 109.46901 * 291.88214 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 8 2.0076 -0.6758 1.1658 5 6 3.4312 -0.6840 1.2957 6 6 4.0417 -1.4440 0.1126 7 7 3.5023 -0.8750 -1.1326 8 16 4.5077 -0.4163 -2.3659 9 8 5.8047 -0.4339 -1.7856 10 8 3.9386 0.7919 -2.8512 11 6 4.3439 -1.7372 -3.5985 12 6 5.2364 -1.4256 -4.8016 13 6 5.1007 -2.5233 -5.8253 14 1 4.4439 -3.3596 -5.6364 15 6 5.8158 -2.4603 -7.0024 16 7 5.6977 -3.4184 -7.8955 17 14 6.9532 -1.0148 -7.3281 18 1 6.1995 0.0626 -8.0182 19 1 7.4824 -0.5011 -6.0391 20 1 8.0821 -1.4566 -8.1857 21 6 2.0434 -0.7198 -1.2472 22 1 1.5746 -1.7011 -1.3204 23 6 1.7091 0.1059 -2.4911 24 1 -0.3632 0.5123 0.8909 25 1 -0.3633 0.5155 -0.8890 26 1 -0.3633 -1.0276 -0.0018 27 1 3.7091 -1.1768 2.2274 28 1 3.8022 0.3410 1.3004 29 1 3.7774 -2.4994 0.1786 30 1 5.1262 -1.3356 0.1262 31 1 3.3057 -1.8042 -3.9234 32 1 4.6483 -2.6861 -3.1568 33 1 6.2746 -1.3590 -4.4762 34 1 4.9324 -0.4767 -5.2434 35 1 6.2005 -3.3739 -8.7238 36 1 2.2106 -0.3240 -3.3581 37 1 0.6314 0.0979 -2.6536 38 1 2.0474 1.1322 -2.3476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121964163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:27 Heat of formation + Delta-G solvation = -135.996927 kcal Electronic energy + Delta-G solvation = -21018.752377 eV Core-core repulsion = 17794.847623 eV Total energy + Delta-G solvation = -3223.904754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63858 -38.47735 -37.13178 -36.19453 -35.94198 -34.56303 -33.51397 -30.02977 -29.05557 -27.92500 -25.27803 -23.77309 -23.07341 -21.89636 -20.02522 -19.26407 -18.30701 -17.99788 -17.20846 -17.15826 -16.44135 -16.27915 -16.22141 -15.63722 -15.34150 -15.17676 -14.83850 -14.14695 -13.93361 -13.82365 -13.46601 -13.40240 -13.20279 -13.12743 -13.05759 -12.89681 -12.69041 -12.47225 -12.24253 -12.18309 -11.99660 -11.83824 -11.73406 -11.44720 -11.21891 -11.05419 -10.86594 -9.78218 -8.38704 -6.44889 -0.80617 1.30313 1.32229 1.42223 1.56794 2.27604 2.71787 2.77713 2.95131 3.11828 3.46278 3.64491 3.87738 3.90184 4.06041 4.08483 4.17202 4.26671 4.44331 4.49479 4.52798 4.59210 4.66480 4.83959 4.84878 4.94221 5.01754 5.02180 5.07337 5.12507 5.32077 5.43740 5.48273 5.53759 6.14361 6.18457 6.60967 7.19680 8.76996 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.005083 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.757978 B = 5506.911971 C = 5745.540041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.057 0.943 4 O -0.386 6.386 5 C 0.052 3.948 6 C 0.072 3.928 7 N -1.000 6.000 8 S 2.613 3.387 9 O -0.990 6.990 10 O -0.974 6.974 11 C -0.590 4.590 12 C -0.014 4.014 13 C -0.529 4.529 14 H 0.048 0.952 15 C 0.015 3.985 16 N -0.939 5.939 17 Si 0.925 3.075 18 H -0.259 1.259 19 H -0.251 1.251 20 H -0.273 1.273 21 C 0.120 3.880 22 H 0.098 0.902 23 C -0.187 4.187 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.134 0.866 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.030 0.970 34 H 0.033 0.967 35 H 0.270 0.730 36 H 0.050 0.950 37 H 0.104 0.896 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 6.699 18.568 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.019 3.981 3 H 0.075 0.925 4 O -0.305 6.305 5 C -0.027 4.027 6 C -0.053 4.053 7 N -0.840 5.840 8 S 2.711 3.289 9 O -0.981 6.981 10 O -0.964 6.964 11 C -0.721 4.721 12 C -0.053 4.053 13 C -0.568 4.568 14 H 0.066 0.934 15 C -0.183 4.183 16 N -0.579 5.579 17 Si 0.747 3.253 18 H -0.183 1.183 19 H -0.175 1.175 20 H -0.198 1.198 21 C 0.014 3.986 22 H 0.116 0.884 23 C -0.245 4.245 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.151 0.849 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.788 7.345 18.532 21.785 hybrid contribution 0.677 -0.348 -1.120 1.354 sum -8.111 6.996 17.412 20.443 Atomic orbital electron populations 1.21821 0.90325 1.03866 1.03886 1.22507 0.96878 0.94736 0.83946 0.92453 1.87920 1.21514 1.77676 1.43348 1.23046 0.80661 1.00239 0.98708 1.22421 1.00438 0.99420 0.83015 1.57839 1.16998 1.80181 1.29004 1.04835 0.72625 0.76620 0.74775 1.93471 1.40381 1.87918 1.76321 1.93593 1.77457 1.43662 1.81705 1.30403 1.10080 1.18616 1.12991 1.19352 0.95162 0.97777 0.93028 1.21159 1.26815 1.07074 1.01742 0.93372 1.25862 0.98034 0.98794 0.95650 1.70004 1.43425 1.34948 1.09509 0.86029 0.79481 0.80054 0.79709 1.18316 1.17462 1.19786 1.21852 0.78595 1.01127 0.97018 0.88428 1.22699 1.04607 1.02085 0.95122 0.90999 0.89104 0.91056 0.84852 0.93077 0.88860 0.87854 0.84319 0.84720 0.95199 0.94920 0.92046 0.93093 0.87758 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.38 71.98 0.68 -1.29 16 2 C 0.08 1.53 2.83 30.56 0.09 1.62 16 3 H 0.06 1.20 8.08 -2.38 -0.02 1.18 16 4 O -0.39 -7.96 10.39 -148.98 -1.55 -9.51 16 5 C 0.05 0.93 6.98 72.08 0.50 1.44 16 6 C 0.07 1.51 6.70 86.35 0.58 2.09 16 7 N -1.00 -25.46 3.26 -490.09 -1.60 -27.06 16 8 S 2.61 86.92 4.86 -56.49 -0.27 86.64 16 9 O -0.99 -37.71 16.33 -127.65 -2.08 -39.79 16 10 O -0.97 -35.36 13.66 -127.65 -1.74 -37.11 16 11 C -0.59 -21.51 5.86 71.98 0.42 -21.09 16 12 C -0.01 -0.67 4.05 29.85 0.12 -0.54 16 13 C -0.53 -29.99 9.66 25.60 0.25 -29.74 16 14 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 15 C 0.02 0.89 5.47 84.66 0.46 1.35 16 16 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 17 Si 0.92 43.72 27.47 68.60 1.88 45.60 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 C 0.12 2.59 3.13 44.83 0.14 2.73 16 22 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 23 C -0.19 -4.30 7.22 71.98 0.52 -3.78 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.09 1.01 6.91 -2.39 -0.02 0.99 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.10 2.29 6.64 -2.39 -0.02 2.27 16 31 H 0.14 4.60 6.73 -2.39 -0.02 4.59 16 32 H 0.13 4.57 8.14 -2.39 -0.02 4.55 16 33 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 34 H 0.03 1.49 7.57 -2.39 -0.02 1.48 16 35 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.05 1.34 4.86 -2.39 -0.01 1.33 16 37 H 0.10 1.71 7.13 -2.39 -0.02 1.69 16 38 H 0.08 2.19 6.50 -2.38 -0.02 2.18 16 Total: -1.00 -71.83 306.86 -0.32 -72.15 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.99 Total: 13.69 kcal Atomic # 6 Polarization: -50.97 SS G_CDS: 3.76 Total: -47.21 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.30 Total: -84.46 kcal Atomic # 8 Polarization: -81.04 SS G_CDS: -5.37 Total: -86.41 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Atomic # 16 Polarization: 86.92 SS G_CDS: -0.27 Total: 86.64 kcal Total: -71.83 -0.32 -72.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121964163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.850 kcal (2) G-P(sol) polarization free energy of solvation -71.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds