Wall clock time and date at job start Mon Mar 30 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35980 * 117.00186 * 2 1 4 4 C 1.38719 * 120.07018 * 0.02562 * 3 2 1 5 5 C 1.37945 * 119.90068 * 180.02562 * 4 3 2 6 6 C 1.39121 * 120.29168 * 359.94104 * 5 4 3 7 7 C 1.38351 * 119.79020 * 359.94320 * 6 5 4 8 8 C 1.38508 * 119.87471 * 0.15472 * 7 6 5 9 9 C 1.50770 * 121.41261 * 180.26095 * 7 6 5 10 10 C 1.53068 * 109.69269 * 342.18117 * 9 7 6 11 11 H 1.08999 * 109.69649 * 288.53180 * 10 9 7 12 12 C 1.50697 * 109.70512 * 167.93022 * 10 9 7 13 13 O 1.21297 * 119.99569 * 1.16185 * 12 10 9 14 14 N 1.34774 * 120.00620 * 181.16184 * 12 10 9 15 15 C 1.37097 * 120.00156 * 179.97438 * 14 12 10 16 16 H 1.07997 * 120.00180 * 0.02562 * 15 14 12 17 17 C 1.38957 * 119.99627 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00024 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99732 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47364 * 59.99719 * 19 17 15 21 21 H 1.48501 * 109.47151 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47133 * 299.99942 * 19 17 15 23 23 C 1.53405 * 108.29390 * 48.22915 * 10 9 7 24 24 O 1.35954 * 118.42923 * 179.75933 * 6 5 4 25 25 H 1.09009 * 109.46496 * 299.99794 * 1 2 3 26 26 H 1.09000 * 109.47125 * 59.99299 * 1 2 3 27 27 H 1.08996 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.04770 * 0.33468 * 4 3 2 29 29 H 1.08004 * 119.85212 * 179.91595 * 5 4 3 30 30 H 1.08001 * 119.85998 * 179.85258 * 8 7 6 31 31 H 1.08993 * 109.44557 * 222.10626 * 9 7 6 32 32 H 1.09001 * 109.39399 * 102.21940 * 9 7 6 33 33 H 0.97007 * 119.99752 * 0.02562 * 14 12 10 34 34 H 0.97005 * 120.00075 * 180.02562 * 18 17 15 35 35 H 1.09003 * 109.68525 * 175.54898 * 23 10 9 36 36 H 1.08996 * 109.68569 * 54.98833 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2924 2.3759 0.0005 5 6 1.9223 3.6031 0.0000 6 6 3.3114 3.6789 0.0002 7 6 4.0631 2.5174 0.0020 8 6 3.4297 1.2856 0.0005 9 6 5.5703 2.5568 0.0081 10 6 6.0518 3.9423 -0.4296 11 1 5.8693 4.0746 -1.4960 12 6 7.5250 4.0817 -0.1444 13 8 8.1390 3.1552 0.3412 14 7 8.1603 5.2358 -0.4289 15 6 9.5004 5.3628 -0.1690 16 1 10.0471 4.5379 0.2634 17 6 10.1551 6.5529 -0.4618 18 7 9.4897 7.5568 -0.9874 19 14 11.9812 6.7257 -0.1083 20 1 12.7335 5.7032 -0.8789 21 1 12.4366 8.0815 -0.5077 22 1 12.2251 6.5298 1.3434 23 6 5.2695 4.9968 0.3637 24 8 3.8926 4.9079 -0.0054 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2137 2.3217 0.0064 29 1 1.3344 4.5092 -0.0010 30 1 4.0168 0.3791 -0.0004 31 1 5.9557 1.8047 -0.6802 32 1 5.9338 2.3477 1.0143 33 1 7.6691 5.9769 -0.8169 34 1 9.9469 8.3875 -1.1922 35 1 5.6496 5.9907 0.1273 36 1 5.3763 4.8067 1.4316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126813401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:17 Heat of formation + Delta-G solvation = -94.458022 kcal Electronic energy + Delta-G solvation = -20909.993228 eV Core-core repulsion = 17552.445785 eV Total energy + Delta-G solvation = -3357.547443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78116 -39.37947 -38.09776 -36.32180 -34.28479 -33.56385 -31.45182 -30.47151 -29.84329 -27.29978 -25.70945 -25.06952 -23.38876 -22.59458 -20.48367 -18.95523 -18.02275 -17.80046 -17.56990 -16.64981 -16.16891 -15.81283 -15.08923 -14.78329 -14.54120 -14.33670 -13.94214 -13.89477 -13.35783 -13.13821 -12.98760 -12.90637 -12.58998 -12.48528 -11.96078 -11.68969 -11.50797 -11.12870 -10.89127 -10.77053 -10.49476 -10.41927 -10.23767 -10.19085 -9.58803 -8.80542 -8.49777 -8.06694 -7.66439 -6.49415 -3.91000 1.25370 1.48906 3.14890 3.17643 3.22568 3.26678 3.46788 3.71300 3.79142 4.10676 4.63230 4.74574 4.84027 4.93546 4.95693 4.96765 5.02403 5.14878 5.25989 5.31171 5.36967 5.47886 5.64997 5.80527 5.85162 5.92720 5.98779 6.15867 6.29553 6.34283 6.42455 6.55317 6.59649 7.27636 7.48091 7.60870 7.96093 8.49657 9.08289 9.42993 9.93003 10.67672 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.048175 B = 0.003487 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.074616 B = 8027.630744 C = 8514.526393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.090 3.910 4 C -0.180 4.180 5 C -0.112 4.112 6 C 0.098 3.902 7 C -0.110 4.110 8 C -0.116 4.116 9 C -0.057 4.057 10 C -0.136 4.136 11 H 0.097 0.903 12 C 0.445 3.555 13 O -0.590 6.590 14 N -0.555 5.555 15 C -0.305 4.305 16 H 0.104 0.896 17 C 0.025 3.975 18 N -0.898 5.898 19 Si 0.932 3.068 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.072 3.928 24 O -0.314 6.314 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.393 0.607 34 H 0.274 0.726 35 H 0.115 0.885 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.203 -7.425 0.859 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.046 3.954 4 C -0.198 4.198 5 C -0.130 4.130 6 C 0.053 3.947 7 C -0.111 4.111 8 C -0.135 4.135 9 C -0.094 4.094 10 C -0.158 4.158 11 H 0.115 0.885 12 C 0.230 3.770 13 O -0.476 6.476 14 N -0.190 5.190 15 C -0.434 4.434 16 H 0.122 0.878 17 C -0.177 4.177 18 N -0.538 5.538 19 Si 0.759 3.241 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.003 4.003 24 O -0.229 6.229 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.227 0.773 34 H 0.084 0.916 35 H 0.133 0.867 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.706 -7.834 1.077 18.483 hybrid contribution 0.505 0.665 -0.130 0.845 sum -16.201 -7.169 0.947 17.742 Atomic orbital electron populations 1.22998 0.78857 1.03609 1.01163 1.86067 1.20943 1.26896 1.89483 1.18778 0.92135 0.84085 1.00432 1.20932 0.99715 0.91516 1.07666 1.20331 0.91561 0.97872 1.03284 1.18647 0.91750 0.84336 0.99929 1.19847 0.96514 0.91757 1.02957 1.20134 0.91209 0.97677 1.04475 1.20284 0.88265 0.96743 1.04099 1.21831 0.95566 0.96451 1.01911 0.88533 1.19436 0.87441 0.84494 0.85582 1.90529 1.67619 1.39917 1.49499 1.41914 1.09886 1.12668 1.54582 1.19691 0.84175 1.00164 1.39395 0.87805 1.25294 1.00666 0.95060 0.96692 1.69597 1.37338 1.04346 1.42538 0.85897 0.81823 0.77336 0.79069 1.19810 1.20888 1.19806 1.23050 0.77803 1.00541 0.98915 1.86013 1.26795 1.25948 1.84103 0.92856 0.92841 0.88524 0.85184 0.85035 0.84890 0.89422 0.88939 0.77292 0.91607 0.86726 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.78 10.50 -19.68 -0.21 -3.99 16 3 C 0.09 1.17 6.68 -39.30 -0.26 0.91 16 4 C -0.18 -2.09 9.03 -39.51 -0.36 -2.45 16 5 C -0.11 -1.45 9.93 -39.36 -0.39 -1.84 16 6 C 0.10 1.50 6.47 -39.21 -0.25 1.25 16 7 C -0.11 -1.68 5.75 -104.45 -0.60 -2.28 16 8 C -0.12 -1.63 9.60 -39.38 -0.38 -2.01 16 9 C -0.06 -0.95 4.65 -27.81 -0.13 -1.08 16 10 C -0.14 -2.44 2.76 -91.53 -0.25 -2.69 16 11 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 12 C 0.45 10.24 7.11 -10.99 -0.08 10.17 16 13 O -0.59 -15.59 15.38 5.54 0.09 -15.51 16 14 N -0.56 -13.68 5.16 -10.96 -0.06 -13.74 16 15 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 16 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 19 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.07 1.18 6.25 37.37 0.23 1.42 16 24 O -0.31 -5.05 10.27 -19.60 -0.20 -5.25 16 25 H 0.05 0.34 7.66 -51.92 -0.40 -0.06 16 26 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.13 1.13 6.31 -52.48 -0.33 0.80 16 29 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.09 1.63 7.71 -51.93 -0.40 1.23 16 33 H 0.39 9.25 7.30 -40.82 -0.30 8.95 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 35 H 0.11 1.82 7.50 -51.93 -0.39 1.43 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -30.77 306.76 -6.03 -36.80 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.26 Total: 9.86 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.72 Total: -5.27 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.67 Total: -36.89 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.32 Total: -24.74 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.77 -6.03 -36.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126813401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.658 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds