Wall clock time and date at job start Mon Mar 30 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35980 * 117.00186 * 2 1 4 4 C 1.38719 * 120.07018 * 0.02562 * 3 2 1 5 5 C 1.37945 * 119.90068 * 180.02562 * 4 3 2 6 6 C 1.39121 * 120.29168 * 359.94104 * 5 4 3 7 7 C 1.38351 * 119.79020 * 359.94320 * 6 5 4 8 8 C 1.38508 * 119.87471 * 0.15472 * 7 6 5 9 9 C 1.50770 * 121.41261 * 180.26095 * 7 6 5 10 10 C 1.53068 * 109.69269 * 342.18117 * 9 7 6 11 11 H 1.08999 * 109.69649 * 288.53180 * 10 9 7 12 12 C 1.50697 * 109.70512 * 167.93022 * 10 9 7 13 13 O 1.21297 * 119.99569 * 1.16185 * 12 10 9 14 14 N 1.34774 * 120.00620 * 181.16184 * 12 10 9 15 15 C 1.37097 * 120.00156 * 179.97438 * 14 12 10 16 16 H 1.07997 * 120.00180 * 0.02562 * 15 14 12 17 17 C 1.38957 * 119.99627 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00024 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99732 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47364 * 59.99719 * 19 17 15 21 21 H 1.48501 * 109.47151 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47133 * 299.99942 * 19 17 15 23 23 C 1.53405 * 108.29390 * 48.22915 * 10 9 7 24 24 O 1.35954 * 118.42923 * 179.75933 * 6 5 4 25 25 H 1.09009 * 109.46496 * 299.99794 * 1 2 3 26 26 H 1.09000 * 109.47125 * 59.99299 * 1 2 3 27 27 H 1.08996 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.04770 * 0.33468 * 4 3 2 29 29 H 1.08004 * 119.85212 * 179.91595 * 5 4 3 30 30 H 1.08001 * 119.85998 * 179.85258 * 8 7 6 31 31 H 1.08993 * 109.44557 * 222.10626 * 9 7 6 32 32 H 1.09001 * 109.39399 * 102.21940 * 9 7 6 33 33 H 0.97007 * 119.99752 * 0.02562 * 14 12 10 34 34 H 0.97005 * 120.00075 * 180.02562 * 18 17 15 35 35 H 1.09003 * 109.68525 * 175.54898 * 23 10 9 36 36 H 1.08996 * 109.68569 * 54.98833 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2924 2.3759 0.0005 5 6 1.9223 3.6031 0.0000 6 6 3.3114 3.6789 0.0002 7 6 4.0631 2.5174 0.0020 8 6 3.4297 1.2856 0.0005 9 6 5.5703 2.5568 0.0081 10 6 6.0518 3.9423 -0.4296 11 1 5.8693 4.0746 -1.4960 12 6 7.5250 4.0817 -0.1444 13 8 8.1390 3.1552 0.3412 14 7 8.1603 5.2358 -0.4289 15 6 9.5004 5.3628 -0.1690 16 1 10.0471 4.5379 0.2634 17 6 10.1551 6.5529 -0.4618 18 7 9.4897 7.5568 -0.9874 19 14 11.9812 6.7257 -0.1083 20 1 12.7335 5.7032 -0.8789 21 1 12.4366 8.0815 -0.5077 22 1 12.2251 6.5298 1.3434 23 6 5.2695 4.9968 0.3637 24 8 3.8926 4.9079 -0.0054 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2137 2.3217 0.0064 29 1 1.3344 4.5092 -0.0010 30 1 4.0168 0.3791 -0.0004 31 1 5.9557 1.8047 -0.6802 32 1 5.9338 2.3477 1.0143 33 1 7.6691 5.9769 -0.8169 34 1 9.9469 8.3875 -1.1922 35 1 5.6496 5.9907 0.1273 36 1 5.3763 4.8067 1.4316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126813401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:17 Heat of formation + Delta-G solvation = -114.711251 kcal Electronic energy + Delta-G solvation = -20910.871474 eV Core-core repulsion = 17552.445785 eV Total energy + Delta-G solvation = -3358.425689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.96712 -40.55099 -39.71757 -37.37392 -36.16424 -35.05385 -33.37092 -31.71681 -30.88330 -28.07096 -27.32266 -26.54595 -24.82596 -23.65180 -21.83165 -20.60118 -19.93640 -18.86227 -18.70111 -17.87110 -17.71580 -16.68532 -16.56907 -16.23559 -15.92153 -15.80249 -15.47635 -15.24161 -14.63136 -14.46679 -14.18308 -14.14176 -14.00303 -13.64942 -13.49815 -12.94354 -12.81275 -12.59694 -12.47608 -12.15464 -12.07987 -11.94670 -11.58261 -11.54176 -11.28541 -10.43922 -10.08319 -9.86039 -8.72300 -8.50406 -6.00184 0.21855 0.43108 1.37689 1.42083 1.52754 1.90771 2.20743 2.29529 2.43387 2.68929 3.03785 3.13980 3.56586 3.65850 3.80117 3.83521 4.00863 4.06648 4.24045 4.36744 4.44218 4.46981 4.48045 4.54395 4.71559 4.76927 4.88892 4.93577 4.96089 5.05863 5.30399 5.38170 5.41945 5.55560 5.93644 6.30287 6.50888 6.53654 7.05794 7.46368 7.99969 8.66292 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.048175 B = 0.003487 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.074616 B = 8027.630744 C = 8514.526393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.092 3.908 4 C -0.168 4.168 5 C -0.107 4.107 6 C 0.071 3.929 7 C -0.120 4.120 8 C -0.131 4.131 9 C -0.050 4.050 10 C -0.124 4.124 11 H 0.107 0.893 12 C 0.447 3.553 13 O -0.627 6.627 14 N -0.562 5.562 15 C -0.339 4.339 16 H 0.082 0.918 17 C -0.008 4.008 18 N -0.916 5.916 19 Si 0.994 3.006 20 H -0.272 1.272 21 H -0.270 1.270 22 H -0.271 1.271 23 C 0.081 3.919 24 O -0.316 6.316 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.117 0.883 28 H 0.166 0.834 29 H 0.154 0.846 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.398 0.602 34 H 0.280 0.720 35 H 0.118 0.882 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.201 -7.331 0.700 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.047 3.953 4 C -0.186 4.186 5 C -0.126 4.126 6 C 0.027 3.973 7 C -0.121 4.121 8 C -0.150 4.150 9 C -0.088 4.088 10 C -0.146 4.146 11 H 0.125 0.875 12 C 0.234 3.766 13 O -0.515 6.515 14 N -0.197 5.197 15 C -0.469 4.469 16 H 0.100 0.900 17 C -0.209 4.209 18 N -0.556 5.556 19 Si 0.817 3.183 20 H -0.197 1.197 21 H -0.194 1.194 22 H -0.196 1.196 23 C 0.005 3.995 24 O -0.230 6.230 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.184 0.816 29 H 0.171 0.829 30 H 0.153 0.847 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.232 0.768 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.741 -7.737 0.907 20.296 hybrid contribution 0.964 0.517 -0.085 1.097 sum -17.777 -7.220 0.823 19.205 Atomic orbital electron populations 1.23362 0.76374 1.05560 1.02423 1.86060 1.23517 1.26333 1.89150 1.18883 0.91869 0.85168 0.99358 1.21299 1.01420 0.90326 1.05591 1.20643 0.90588 0.99357 1.01998 1.18952 0.92866 0.83777 1.01750 1.19662 0.95225 0.92618 1.04621 1.20209 0.92325 0.97277 1.05149 1.20151 0.89901 0.95728 1.02993 1.21720 0.91944 0.98103 1.02841 0.87506 1.20230 0.89290 0.83299 0.83781 1.90497 1.69175 1.41019 1.50792 1.41946 1.09396 1.13359 1.55026 1.19683 0.85510 1.00391 1.41278 0.89988 1.26065 1.04658 0.94286 0.95900 1.69657 1.38850 1.04646 1.42403 0.84979 0.76714 0.77758 0.78857 1.19686 1.19432 1.19565 1.22888 0.78267 0.99925 0.98430 1.86004 1.25906 1.26622 1.84490 0.91509 0.91498 0.86499 0.81617 0.82868 0.84731 0.89743 0.90584 0.76777 0.91049 0.86371 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.13 10.50 -93.33 -0.98 -8.11 16 3 C 0.09 2.19 6.68 22.45 0.15 2.34 16 4 C -0.17 -3.35 9.03 22.32 0.20 -3.15 16 5 C -0.11 -2.49 9.93 22.41 0.22 -2.27 16 6 C 0.07 2.09 6.47 22.51 0.15 2.23 16 7 C -0.12 -3.65 5.75 -19.75 -0.11 -3.77 16 8 C -0.13 -3.60 9.60 22.40 0.22 -3.38 16 9 C -0.05 -1.73 4.65 29.89 0.14 -1.59 16 10 C -0.12 -4.56 2.76 -11.38 -0.03 -4.59 16 11 H 0.11 3.70 8.14 -2.39 -0.02 3.69 16 12 C 0.45 21.25 7.11 87.66 0.62 21.87 16 13 O -0.63 -34.48 15.38 -3.08 -0.05 -34.53 16 14 N -0.56 -28.46 5.16 -306.98 -1.59 -30.04 16 15 C -0.34 -18.97 9.68 84.04 0.81 -18.16 16 16 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 17 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 18 N -0.92 -48.54 13.05 21.66 0.28 -48.25 16 19 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 23 C 0.08 2.65 6.25 72.12 0.45 3.10 16 24 O -0.32 -9.87 10.27 -93.04 -0.96 -10.82 16 25 H 0.07 0.59 7.66 -2.38 -0.02 0.57 16 26 H 0.07 0.59 7.67 -2.39 -0.02 0.57 16 27 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.17 2.07 6.31 -2.91 -0.02 2.05 16 29 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.08 2.82 7.71 -2.39 -0.02 2.80 16 33 H 0.40 19.11 7.30 -92.70 -0.68 18.43 16 34 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 35 H 0.12 3.77 7.50 -2.39 -0.02 3.75 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -66.58 306.76 3.58 -63.00 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.44 Total: 30.57 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 4.40 Total: -6.02 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -1.30 Total: -78.29 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -1.98 Total: -53.46 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -66.58 3.58 -63.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126813401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.708 kcal (2) G-P(sol) polarization free energy of solvation -66.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds