Wall clock time and date at job start Mon Mar 30 2020 02:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35982 * 116.99823 * 2 1 4 4 C 1.38722 * 120.07173 * 359.97438 * 3 2 1 5 5 C 1.37945 * 119.90054 * 179.97438 * 4 3 2 6 6 C 1.39127 * 120.29257 * 0.03951 * 5 4 3 7 7 C 1.38347 * 119.78399 * 0.12745 * 6 5 4 8 8 C 1.38498 * 119.88241 * 359.75054 * 7 6 5 9 9 C 1.50783 * 121.40565 * 179.51289 * 7 6 5 10 10 C 1.53065 * 109.69188 * 17.86547 * 9 7 6 11 11 H 1.08995 * 109.73445 * 71.48793 * 10 9 7 12 12 C 1.50706 * 109.70045 * 192.06294 * 10 9 7 13 13 O 1.21297 * 119.99667 * 358.83785 * 12 10 9 14 14 N 1.34769 * 120.00318 * 178.84008 * 12 10 9 15 15 C 1.37095 * 120.00113 * 180.02562 * 14 12 10 16 16 H 1.07997 * 120.00234 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00049 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00305 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00224 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 119.99902 * 19 17 15 22 22 H 1.48498 * 109.47295 * 240.00508 * 19 17 15 23 23 C 1.53405 * 108.29772 * 311.76241 * 10 9 7 24 24 O 1.35954 * 118.43189 * 180.17225 * 6 5 4 25 25 H 1.09008 * 109.47497 * 60.00406 * 1 2 3 26 26 H 1.08996 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47530 * 300.00360 * 1 2 3 28 28 H 1.07998 * 120.04768 * 359.91189 * 4 3 2 29 29 H 1.08001 * 119.85143 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.86192 * 180.20382 * 8 7 6 31 31 H 1.08999 * 109.43134 * 257.80393 * 9 7 6 32 32 H 1.08999 * 109.43777 * 137.93736 * 9 7 6 33 33 H 0.97005 * 119.99976 * 359.97438 * 14 12 10 34 34 H 0.97000 * 120.00002 * 359.97438 * 18 17 15 35 35 H 1.09005 * 109.68661 * 184.44571 * 23 10 9 36 36 H 1.09000 * 109.68650 * 304.97413 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2922 2.3760 -0.0005 5 6 1.9220 3.6032 0.0000 6 6 3.3112 3.6790 0.0002 7 6 4.0629 2.5175 -0.0027 8 6 3.4296 1.2858 -0.0007 9 6 5.5701 2.5570 -0.0135 10 6 6.0529 3.9426 0.4224 11 1 5.8743 4.0758 1.4893 12 6 7.5253 4.0820 0.1327 13 8 8.1378 3.1553 -0.3544 14 7 8.1614 5.2361 0.4150 15 6 9.5006 5.3630 0.1510 16 1 10.0461 4.5380 -0.2828 17 6 10.1563 6.5531 0.4415 18 7 9.4929 7.5569 0.9698 19 14 11.9814 6.7258 0.0825 20 1 12.4917 5.4618 -0.5067 21 1 12.1940 7.8395 -0.8765 22 1 12.7091 7.0135 1.3445 23 6 5.2683 4.9969 -0.3689 24 8 3.8924 4.9081 0.0044 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2135 2.3217 -0.0024 29 1 1.3342 4.5092 0.0000 30 1 4.0167 0.3793 0.0003 31 1 5.9312 2.3474 -1.0204 32 1 5.9576 1.8051 0.6739 33 1 7.6714 5.9773 0.8042 34 1 8.5453 7.4671 1.1566 35 1 5.6489 5.9909 -0.1338 36 1 5.3724 4.8070 -1.4371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126813594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:19 Heat of formation + Delta-G solvation = -93.559182 kcal Electronic energy + Delta-G solvation = -20953.684484 eV Core-core repulsion = 17596.176017 eV Total energy + Delta-G solvation = -3357.508467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85531 -39.45239 -38.24447 -36.38781 -34.62766 -33.69158 -31.38535 -30.45817 -29.88826 -27.34144 -25.67236 -24.95383 -23.42377 -22.65455 -20.67326 -19.24197 -18.05610 -17.85372 -17.66262 -16.86149 -16.42343 -15.86000 -15.21674 -14.71820 -14.63750 -14.46381 -14.10870 -13.79937 -13.47965 -13.21911 -13.06318 -13.02421 -12.69148 -12.63859 -11.99742 -11.67007 -11.33839 -11.05296 -10.92502 -10.83965 -10.47114 -10.27547 -10.25924 -9.94440 -9.64312 -8.86395 -8.55902 -8.13101 -7.72672 -6.83251 -3.97483 1.19758 1.42990 3.12852 3.24508 3.31382 3.39197 3.50357 3.65727 3.73017 4.17021 4.53367 4.69348 4.76223 4.84783 4.89632 4.92388 4.96512 5.08467 5.22672 5.23677 5.28892 5.37689 5.55643 5.70228 5.73243 5.86315 5.93063 5.98467 6.19737 6.23904 6.33460 6.48136 6.52928 7.22306 7.53063 7.71502 7.99827 8.49038 8.68238 9.37076 9.74090 10.59738 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.048239 B = 0.003499 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.309104 B = 8000.025081 C = 8486.148811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.092 3.908 4 C -0.179 4.179 5 C -0.111 4.111 6 C 0.097 3.903 7 C -0.110 4.110 8 C -0.116 4.116 9 C -0.056 4.056 10 C -0.136 4.136 11 H 0.096 0.904 12 C 0.448 3.552 13 O -0.583 6.583 14 N -0.568 5.568 15 C -0.385 4.385 16 H 0.102 0.898 17 C -0.007 4.007 18 N -0.897 5.897 19 Si 1.096 2.904 20 H -0.283 1.283 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.073 3.927 24 O -0.314 6.314 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.376 0.624 34 H 0.262 0.738 35 H 0.111 0.889 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.449 -8.177 -1.048 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.047 3.953 4 C -0.198 4.198 5 C -0.129 4.129 6 C 0.052 3.948 7 C -0.111 4.111 8 C -0.135 4.135 9 C -0.094 4.094 10 C -0.158 4.158 11 H 0.114 0.886 12 C 0.234 3.766 13 O -0.468 6.468 14 N -0.205 5.205 15 C -0.514 4.514 16 H 0.119 0.881 17 C -0.210 4.210 18 N -0.536 5.536 19 Si 0.922 3.078 20 H -0.208 1.208 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.003 4.003 24 O -0.228 6.228 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.210 0.790 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.708 -7.747 -1.242 17.558 hybrid contribution -1.769 -0.582 0.193 1.873 sum -17.477 -8.329 -1.049 19.389 Atomic orbital electron populations 1.23003 0.78802 1.03663 1.01181 1.86069 1.20990 1.26844 1.89440 1.18781 0.92124 0.84116 1.00275 1.20941 0.99763 0.91491 1.07597 1.20334 0.91515 0.97910 1.03185 1.18639 0.91766 0.84248 1.00137 1.19827 0.96421 0.91795 1.03025 1.20131 0.91241 0.97659 1.04453 1.20279 0.88364 0.96565 1.04148 1.21846 0.95418 0.96689 1.01886 0.88571 1.19357 0.87393 0.84292 0.85572 1.90536 1.67627 1.39651 1.48983 1.41999 1.10271 1.12687 1.55520 1.20647 0.84450 1.03348 1.43001 0.88050 1.26558 1.08050 0.91073 0.95342 1.70850 1.10261 1.32206 1.40245 0.83050 0.71922 0.75979 0.76847 1.20848 1.20913 1.20917 1.23014 0.78021 1.00226 0.98992 1.86010 1.26714 1.26055 1.84063 0.92835 0.88477 0.92817 0.85113 0.84998 0.84847 0.88899 0.89373 0.79010 0.92609 0.87125 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.73 10.50 -19.68 -0.21 -3.93 16 3 C 0.09 1.17 6.68 -39.30 -0.26 0.91 16 4 C -0.18 -2.05 9.03 -39.51 -0.36 -2.41 16 5 C -0.11 -1.41 9.93 -39.36 -0.39 -1.80 16 6 C 0.10 1.46 6.47 -39.21 -0.25 1.21 16 7 C -0.11 -1.66 5.75 -104.45 -0.60 -2.26 16 8 C -0.12 -1.61 9.60 -39.38 -0.38 -1.99 16 9 C -0.06 -0.94 4.65 -27.81 -0.13 -1.06 16 10 C -0.14 -2.43 2.76 -91.53 -0.25 -2.68 16 11 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 12 C 0.45 10.32 7.11 -10.99 -0.08 10.24 16 13 O -0.58 -15.53 15.38 5.54 0.09 -15.45 16 14 N -0.57 -13.90 5.16 -10.96 -0.06 -13.96 16 15 C -0.39 -10.59 9.68 -14.93 -0.14 -10.73 16 16 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 17 C -0.01 -0.19 5.50 -17.47 -0.10 -0.29 16 18 N -0.90 -24.65 13.68 55.50 0.76 -23.89 16 19 Si 1.10 23.92 29.92 -169.99 -5.09 18.84 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.07 1.18 6.25 37.37 0.23 1.41 16 24 O -0.31 -4.97 10.27 -19.60 -0.20 -5.17 16 25 H 0.05 0.33 7.66 -51.92 -0.40 -0.06 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.33 7.67 -51.93 -0.40 -0.06 16 28 H 0.13 1.11 6.31 -52.49 -0.33 0.78 16 29 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.09 1.64 7.71 -51.93 -0.40 1.24 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.38 8.50 6.13 -40.82 -0.25 8.25 16 34 H 0.26 6.92 6.78 -40.82 -0.28 6.64 16 35 H 0.11 1.70 7.50 -51.93 -0.39 1.32 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -32.12 305.06 -5.98 -38.10 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.15 Total: 9.13 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.72 Total: -8.26 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.70 Total: -37.85 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.32 Total: -24.55 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.09 Total: 18.84 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.12 -5.98 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126813594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.462 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds