Wall clock time and date at job start Mon Mar 30 2020 02:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35982 * 116.99823 * 2 1 4 4 C 1.38722 * 120.07173 * 359.97438 * 3 2 1 5 5 C 1.37945 * 119.90054 * 179.97438 * 4 3 2 6 6 C 1.39127 * 120.29257 * 0.03951 * 5 4 3 7 7 C 1.38347 * 119.78399 * 0.12745 * 6 5 4 8 8 C 1.38498 * 119.88241 * 359.75054 * 7 6 5 9 9 C 1.50783 * 121.40565 * 179.51289 * 7 6 5 10 10 C 1.53065 * 109.69188 * 17.86547 * 9 7 6 11 11 H 1.08995 * 109.73445 * 71.48793 * 10 9 7 12 12 C 1.50706 * 109.70045 * 192.06294 * 10 9 7 13 13 O 1.21297 * 119.99667 * 358.83785 * 12 10 9 14 14 N 1.34769 * 120.00318 * 178.84008 * 12 10 9 15 15 C 1.37095 * 120.00113 * 180.02562 * 14 12 10 16 16 H 1.07997 * 120.00234 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00049 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00305 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00224 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 119.99902 * 19 17 15 22 22 H 1.48498 * 109.47295 * 240.00508 * 19 17 15 23 23 C 1.53405 * 108.29772 * 311.76241 * 10 9 7 24 24 O 1.35954 * 118.43189 * 180.17225 * 6 5 4 25 25 H 1.09008 * 109.47497 * 60.00406 * 1 2 3 26 26 H 1.08996 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47530 * 300.00360 * 1 2 3 28 28 H 1.07998 * 120.04768 * 359.91189 * 4 3 2 29 29 H 1.08001 * 119.85143 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.86192 * 180.20382 * 8 7 6 31 31 H 1.08999 * 109.43134 * 257.80393 * 9 7 6 32 32 H 1.08999 * 109.43777 * 137.93736 * 9 7 6 33 33 H 0.97005 * 119.99976 * 359.97438 * 14 12 10 34 34 H 0.97000 * 120.00002 * 359.97438 * 18 17 15 35 35 H 1.09005 * 109.68661 * 184.44571 * 23 10 9 36 36 H 1.09000 * 109.68650 * 304.97413 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2922 2.3760 -0.0005 5 6 1.9220 3.6032 0.0000 6 6 3.3112 3.6790 0.0002 7 6 4.0629 2.5175 -0.0027 8 6 3.4296 1.2858 -0.0007 9 6 5.5701 2.5570 -0.0135 10 6 6.0529 3.9426 0.4224 11 1 5.8743 4.0758 1.4893 12 6 7.5253 4.0820 0.1327 13 8 8.1378 3.1553 -0.3544 14 7 8.1614 5.2361 0.4150 15 6 9.5006 5.3630 0.1510 16 1 10.0461 4.5380 -0.2828 17 6 10.1563 6.5531 0.4415 18 7 9.4929 7.5569 0.9698 19 14 11.9814 6.7258 0.0825 20 1 12.4917 5.4618 -0.5067 21 1 12.1940 7.8395 -0.8765 22 1 12.7091 7.0135 1.3445 23 6 5.2683 4.9969 -0.3689 24 8 3.8924 4.9081 0.0044 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2135 2.3217 -0.0024 29 1 1.3342 4.5092 0.0000 30 1 4.0167 0.3793 0.0003 31 1 5.9312 2.3474 -1.0204 32 1 5.9576 1.8051 0.6739 33 1 7.6714 5.9773 0.8042 34 1 8.5453 7.4671 1.1566 35 1 5.6489 5.9909 -0.1338 36 1 5.3724 4.8070 -1.4371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126813594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:19 Heat of formation + Delta-G solvation = -114.938319 kcal Electronic energy + Delta-G solvation = -20954.611553 eV Core-core repulsion = 17596.176017 eV Total energy + Delta-G solvation = -3358.435536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.04133 -40.65066 -39.83651 -37.42443 -36.57100 -35.14620 -33.26609 -31.72887 -30.92746 -28.08755 -27.15202 -26.56270 -24.91909 -23.69987 -22.09340 -20.77392 -20.05241 -18.93142 -18.82680 -18.23300 -17.74774 -16.76037 -16.64319 -16.28860 -15.93927 -15.80634 -15.53989 -15.34091 -14.79436 -14.56295 -14.25831 -14.20620 -14.03753 -13.70349 -13.41483 -12.85573 -12.83426 -12.63937 -12.15541 -12.06995 -11.97318 -11.89842 -11.62948 -11.58066 -11.33423 -10.51292 -10.17139 -9.90684 -8.96764 -8.76999 -6.12113 0.17509 0.38565 1.47074 1.54325 1.81664 1.88212 2.15178 2.37153 2.40970 2.64255 2.86971 3.10233 3.46565 3.56776 3.71944 3.75979 3.92666 3.97457 4.15044 4.28097 4.35303 4.42234 4.44690 4.44904 4.63748 4.74484 4.81119 4.88746 4.90085 4.99709 5.26562 5.36220 5.50680 5.59200 5.90767 6.24580 6.47920 6.49828 6.64735 7.35044 7.79619 8.50332 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.048239 B = 0.003499 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.309104 B = 8000.025081 C = 8486.148811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.094 3.906 4 C -0.168 4.168 5 C -0.106 4.106 6 C 0.070 3.930 7 C -0.120 4.120 8 C -0.131 4.131 9 C -0.050 4.050 10 C -0.125 4.125 11 H 0.108 0.892 12 C 0.452 3.548 13 O -0.621 6.621 14 N -0.576 5.576 15 C -0.412 4.412 16 H 0.076 0.924 17 C -0.038 4.038 18 N -0.912 5.912 19 Si 1.138 2.862 20 H -0.279 1.279 21 H -0.270 1.270 22 H -0.272 1.272 23 C 0.081 3.919 24 O -0.315 6.315 25 H 0.067 0.933 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.386 0.614 34 H 0.261 0.739 35 H 0.117 0.883 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.647 -8.159 -0.876 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.048 3.952 4 C -0.186 4.186 5 C -0.125 4.125 6 C 0.025 3.975 7 C -0.121 4.121 8 C -0.150 4.150 9 C -0.088 4.088 10 C -0.146 4.146 11 H 0.126 0.874 12 C 0.239 3.761 13 O -0.508 6.508 14 N -0.213 5.213 15 C -0.541 4.541 16 H 0.094 0.906 17 C -0.237 4.237 18 N -0.551 5.551 19 Si 0.957 3.043 20 H -0.204 1.204 21 H -0.196 1.196 22 H -0.197 1.197 23 C 0.005 3.995 24 O -0.229 6.229 25 H 0.085 0.915 26 H 0.135 0.865 27 H 0.085 0.915 28 H 0.185 0.815 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.220 0.780 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.956 -7.728 -1.058 19.576 hybrid contribution -1.274 -0.736 0.139 1.477 sum -19.229 -8.464 -0.919 21.029 Atomic orbital electron populations 1.23367 0.76323 1.05603 1.02451 1.86063 1.23560 1.26295 1.89106 1.18886 0.91850 0.85202 0.99214 1.21312 1.01470 0.90302 1.05502 1.20650 0.90544 0.99395 1.01883 1.18944 0.92880 0.83698 1.01931 1.19636 0.95092 0.92668 1.04730 1.20205 0.92363 0.97258 1.05148 1.20149 0.90047 0.95584 1.03002 1.21742 0.91612 0.98358 1.02937 0.87363 1.20219 0.89310 0.83052 0.83498 1.90508 1.69245 1.40839 1.50231 1.42010 1.09676 1.13552 1.56086 1.20613 0.85909 1.03211 1.44386 0.90619 1.27846 1.11330 0.90304 0.94236 1.70916 1.10512 1.32607 1.41038 0.82558 0.67802 0.76452 0.77441 1.20433 1.19570 1.19692 1.22869 0.78474 0.99722 0.98448 1.86005 1.25811 1.26678 1.84424 0.91486 0.86475 0.91457 0.81541 0.82805 0.84724 0.90610 0.89726 0.77958 0.92799 0.86473 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -7.01 10.50 -93.35 -0.98 -7.99 16 3 C 0.09 2.19 6.68 22.46 0.15 2.34 16 4 C -0.17 -3.26 9.03 22.32 0.20 -3.06 16 5 C -0.11 -2.41 9.93 22.41 0.22 -2.19 16 6 C 0.07 2.02 6.47 22.51 0.15 2.16 16 7 C -0.12 -3.60 5.75 -19.75 -0.11 -3.72 16 8 C -0.13 -3.56 9.60 22.40 0.22 -3.34 16 9 C -0.05 -1.72 4.65 29.90 0.14 -1.58 16 10 C -0.12 -4.50 2.76 -11.38 -0.03 -4.53 16 11 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 12 C 0.45 21.39 7.11 87.66 0.62 22.01 16 13 O -0.62 -34.33 15.38 -3.08 -0.05 -34.38 16 14 N -0.58 -28.83 5.16 -306.99 -1.58 -30.42 16 15 C -0.41 -23.21 9.68 84.04 0.81 -22.39 16 16 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 17 C -0.04 -2.04 5.50 84.93 0.47 -1.57 16 18 N -0.91 -50.02 13.68 21.66 0.30 -49.72 16 19 Si 1.14 47.93 29.92 68.60 2.05 49.98 16 20 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 C 0.08 2.59 6.25 72.12 0.45 3.04 16 24 O -0.31 -9.61 10.27 -93.03 -0.96 -10.56 16 25 H 0.07 0.56 7.66 -2.38 -0.02 0.55 16 26 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.57 7.67 -2.39 -0.02 0.55 16 28 H 0.17 2.00 6.31 -2.91 -0.02 1.98 16 29 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.08 2.80 7.71 -2.39 -0.02 2.78 16 32 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.39 17.70 6.13 -92.70 -0.57 17.13 16 34 H 0.26 13.82 6.78 -92.71 -0.63 13.19 16 35 H 0.12 3.58 7.50 -2.38 -0.02 3.56 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -69.62 305.06 3.87 -65.75 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.69 Total: 28.88 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.40 Total: -11.53 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -1.29 Total: -80.14 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -1.98 Total: -52.93 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.05 Total: 49.98 kcal Total: -69.62 3.87 -65.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126813594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.188 kcal (2) G-P(sol) polarization free energy of solvation -69.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds