Wall clock time and date at job start Mon Mar 30 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46889 * 2 1 4 4 C 1.50698 * 109.47342 * 120.00735 * 2 1 3 5 5 H 1.07997 * 119.99854 * 120.00367 * 4 2 1 6 6 C 1.37877 * 119.99707 * 299.99318 * 4 2 1 7 7 N 1.31518 * 119.99758 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00389 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47470 * 89.98954 * 8 6 4 10 10 H 1.48494 * 109.47283 * 209.99788 * 8 6 4 11 11 H 1.48508 * 109.46880 * 329.99508 * 8 6 4 12 12 O 1.45207 * 109.46588 * 240.00702 * 2 1 3 13 13 C 1.34234 * 116.99956 * 90.00283 * 12 2 1 14 14 O 1.20826 * 119.99734 * 359.97438 * 13 12 2 15 15 C 1.50694 * 119.99597 * 179.97438 * 13 12 2 16 16 N 1.46508 * 109.46844 * 179.97438 * 15 13 12 17 17 C 1.34780 * 119.99852 * 179.97438 * 16 15 13 18 18 O 1.21557 * 120.00061 * 0.02562 * 17 16 15 19 19 C 1.47845 * 119.99555 * 180.02562 * 17 16 15 20 20 C 1.39575 * 120.13807 * 180.02562 * 19 17 16 21 21 C 1.37966 * 119.85100 * 179.97438 * 20 19 17 22 22 C 1.38359 * 120.14194 * 359.97438 * 21 20 19 23 23 C 1.38356 * 120.29572 * 0.04433 * 22 21 20 24 24 C 1.37965 * 120.14354 * 359.95888 * 23 22 21 25 25 H 1.08998 * 109.47537 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46629 * 299.99495 * 1 2 3 27 27 H 1.08997 * 109.47337 * 59.99470 * 1 2 3 28 28 H 0.96998 * 120.00024 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47310 * 59.99996 * 15 13 12 30 30 H 1.08996 * 109.47599 * 299.99408 * 15 13 12 31 31 H 0.97002 * 119.99932 * 0.02562 * 16 15 13 32 32 H 1.07998 * 120.08057 * 359.70005 * 20 19 17 33 33 H 1.08000 * 119.93085 * 179.97438 * 21 20 19 34 34 H 1.08003 * 119.85292 * 180.02562 * 22 21 20 35 35 H 1.08001 * 119.93259 * 179.97438 * 23 22 21 36 36 H 1.08003 * 120.07139 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 2.1382 -0.8593 3.5564 8 14 0.6250 1.2789 2.6543 9 1 -0.8026 0.8726 2.6998 10 1 0.9762 1.9948 3.9070 11 1 0.8473 2.1765 1.4922 12 8 2.0139 -0.6844 -1.1857 13 6 2.2170 0.0643 -2.2812 14 8 1.9973 1.2520 -2.2505 15 6 2.7191 -0.5767 -3.5493 16 7 2.8569 0.4442 -4.5910 17 6 3.2944 0.0998 -5.8184 18 8 3.5742 -1.0580 -6.0612 19 6 3.4340 1.1301 -6.8695 20 6 3.8863 0.7766 -8.1417 21 6 4.0138 1.7429 -9.1182 22 6 3.6940 3.0597 -8.8387 23 6 3.2454 3.4168 -7.5795 24 6 3.1135 2.4603 -6.5940 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.9037 -0.5282 4.4374 29 1 2.0102 -1.3368 -3.8775 30 1 3.6881 -1.0397 -3.3635 31 1 2.6339 1.3681 -4.3972 32 1 4.1401 -0.2501 -8.3600 33 1 4.3641 1.4709 -10.1030 34 1 3.7951 3.8122 -9.6067 35 1 2.9978 4.4464 -7.3676 36 1 2.7628 2.7403 -5.6116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132301745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:56 Heat of formation + Delta-G solvation = -90.298751 kcal Electronic energy + Delta-G solvation = -20354.179661 eV Core-core repulsion = 16996.812577 eV Total energy + Delta-G solvation = -3357.367084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57275 -39.80847 -38.42051 -36.34133 -34.61583 -33.31126 -31.74279 -31.24922 -30.77349 -28.15815 -25.35171 -24.05618 -22.83710 -21.97089 -20.65264 -20.05581 -18.67763 -17.19415 -16.89833 -16.41612 -16.20496 -16.02426 -15.60626 -15.14590 -14.89487 -14.72574 -14.28253 -13.89574 -13.47628 -13.38101 -13.02130 -12.71588 -12.58108 -12.37414 -12.00169 -11.88613 -11.62954 -11.42156 -10.98175 -10.33449 -10.23638 -10.21006 -9.93019 -9.71221 -9.45204 -9.32963 -9.22777 -9.19526 -8.75973 -6.28968 -4.32365 0.54643 1.03284 2.52739 2.63716 2.64886 3.13142 3.25513 3.26417 3.47911 3.59165 4.19923 4.40772 4.50517 4.60455 4.80093 5.01285 5.03603 5.11476 5.18130 5.29675 5.36690 5.49024 5.64363 5.97571 6.01758 6.05613 6.08800 6.10210 6.18673 6.30031 6.47838 6.53627 6.90221 7.20126 7.28335 7.39504 7.95781 8.06112 8.41987 8.77555 9.26947 10.83035 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037035 B = 0.003232 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.861597 B = 8661.433212 C = 9160.256991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.192 3.808 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.089 0.911 6 C 0.080 3.920 7 N -0.886 5.886 8 Si 0.880 3.120 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.263 1.263 12 O -0.333 6.333 13 C 0.452 3.548 14 O -0.522 6.522 15 C 0.124 3.876 16 N -0.716 5.716 17 C 0.562 3.438 18 O -0.536 6.536 19 C -0.132 4.132 20 C -0.059 4.059 21 C -0.130 4.130 22 C -0.096 4.096 23 C -0.127 4.127 24 C -0.084 4.084 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.270 0.730 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.411 0.589 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 7.541 -22.733 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.138 3.862 3 H 0.066 0.934 4 C -0.566 4.566 5 H 0.107 0.893 6 C -0.123 4.123 7 N -0.522 5.522 8 Si 0.709 3.291 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.188 1.188 12 O -0.248 6.248 13 C 0.294 3.706 14 O -0.413 6.413 15 C 0.000 4.000 16 N -0.372 5.372 17 C 0.349 3.651 18 O -0.414 6.414 19 C -0.135 4.135 20 C -0.078 4.078 21 C -0.148 4.148 22 C -0.114 4.114 23 C -0.145 4.145 24 C -0.103 4.103 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.250 0.750 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.352 7.026 -22.568 23.675 hybrid contribution -0.813 1.364 0.513 1.669 sum 0.540 8.391 -22.055 23.603 Atomic orbital electron populations 1.22537 0.98268 1.02064 0.99937 1.21012 0.90600 0.94468 0.80089 0.93439 1.20769 1.33665 1.15009 0.87151 0.89339 1.24734 0.95632 0.96752 0.95216 1.69833 1.44488 1.39881 0.98045 0.86957 0.80771 0.83526 0.77819 1.19939 1.21604 1.18769 1.86516 1.75277 1.42488 1.20471 1.23237 0.74855 0.85996 0.86481 1.90586 1.49331 1.16850 1.84539 1.20671 1.04569 0.90971 0.83830 1.45685 1.67871 1.12964 1.10679 1.18217 0.76904 0.88240 0.81691 1.90791 1.49910 1.19545 1.81109 1.19891 1.05269 0.93484 0.94902 1.21308 0.94780 1.00492 0.91230 1.21178 1.01045 0.93014 0.99576 1.21405 0.96713 0.96445 0.96814 1.21148 1.00368 0.99745 0.93283 1.21442 0.97066 0.92054 0.99755 0.91599 0.92377 0.94385 0.91956 0.87049 0.86891 0.74964 0.84494 0.85252 0.85553 0.85243 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 9.03 37.16 0.34 -3.41 16 2 C 0.19 4.66 2.15 -27.88 -0.06 4.60 16 3 H 0.05 1.21 6.21 -51.93 -0.32 0.89 16 4 C -0.53 -14.82 9.48 -34.44 -0.33 -15.14 16 5 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 6 C 0.08 2.26 5.45 -17.82 -0.10 2.16 16 7 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 8 Si 0.88 21.13 24.37 -169.99 -4.14 16.98 16 9 H -0.27 -6.28 6.87 56.52 0.39 -5.89 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 12 O -0.33 -7.20 9.86 -39.27 -0.39 -7.59 16 13 C 0.45 8.22 8.00 36.00 0.29 8.50 16 14 O -0.52 -10.31 14.89 -18.75 -0.28 -10.59 16 15 C 0.12 1.76 6.27 -5.19 -0.03 1.72 16 16 N -0.72 -9.33 5.48 -62.43 -0.34 -9.68 16 17 C 0.56 7.53 7.77 -12.33 -0.10 7.44 16 18 O -0.54 -8.64 16.35 5.32 0.09 -8.55 16 19 C -0.13 -1.47 5.87 -104.97 -0.62 -2.08 16 20 C -0.06 -0.58 9.60 -39.18 -0.38 -0.96 16 21 C -0.13 -0.99 10.03 -39.64 -0.40 -1.39 16 22 C -0.10 -0.67 10.04 -39.49 -0.40 -1.06 16 23 C -0.13 -0.98 10.03 -39.64 -0.40 -1.38 16 24 C -0.08 -0.79 9.54 -39.19 -0.37 -1.16 16 25 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.06 1.30 3.27 -51.93 -0.17 1.13 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.41 5.02 5.48 -40.82 -0.22 4.80 16 32 H 0.14 1.33 7.65 -52.49 -0.40 0.93 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 1.08 6.41 -52.48 -0.34 0.74 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -32.45 310.79 -6.17 -38.62 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.02 Total: 3.76 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.55 Total: -2.15 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.43 Total: -35.17 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.58 Total: -26.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.14 Total: 16.98 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.45 -6.17 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132301745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.674 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds