Wall clock time and date at job start Mon Mar 30 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46889 * 2 1 4 4 C 1.50698 * 109.47342 * 120.00735 * 2 1 3 5 5 H 1.07997 * 119.99854 * 120.00367 * 4 2 1 6 6 C 1.37877 * 119.99707 * 299.99318 * 4 2 1 7 7 N 1.31518 * 119.99758 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00389 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47470 * 89.98954 * 8 6 4 10 10 H 1.48494 * 109.47283 * 209.99788 * 8 6 4 11 11 H 1.48508 * 109.46880 * 329.99508 * 8 6 4 12 12 O 1.45207 * 109.46588 * 240.00702 * 2 1 3 13 13 C 1.34234 * 116.99956 * 90.00283 * 12 2 1 14 14 O 1.20826 * 119.99734 * 359.97438 * 13 12 2 15 15 C 1.50694 * 119.99597 * 179.97438 * 13 12 2 16 16 N 1.46508 * 109.46844 * 179.97438 * 15 13 12 17 17 C 1.34780 * 119.99852 * 179.97438 * 16 15 13 18 18 O 1.21557 * 120.00061 * 0.02562 * 17 16 15 19 19 C 1.47845 * 119.99555 * 180.02562 * 17 16 15 20 20 C 1.39575 * 120.13807 * 180.02562 * 19 17 16 21 21 C 1.37966 * 119.85100 * 179.97438 * 20 19 17 22 22 C 1.38359 * 120.14194 * 359.97438 * 21 20 19 23 23 C 1.38356 * 120.29572 * 0.04433 * 22 21 20 24 24 C 1.37965 * 120.14354 * 359.95888 * 23 22 21 25 25 H 1.08998 * 109.47537 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46629 * 299.99495 * 1 2 3 27 27 H 1.08997 * 109.47337 * 59.99470 * 1 2 3 28 28 H 0.96998 * 120.00024 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47310 * 59.99996 * 15 13 12 30 30 H 1.08996 * 109.47599 * 299.99408 * 15 13 12 31 31 H 0.97002 * 119.99932 * 0.02562 * 16 15 13 32 32 H 1.07998 * 120.08057 * 359.70005 * 20 19 17 33 33 H 1.08000 * 119.93085 * 179.97438 * 21 20 19 34 34 H 1.08003 * 119.85292 * 180.02562 * 22 21 20 35 35 H 1.08001 * 119.93259 * 179.97438 * 23 22 21 36 36 H 1.08003 * 120.07139 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 2.1382 -0.8593 3.5564 8 14 0.6250 1.2789 2.6543 9 1 -0.8026 0.8726 2.6998 10 1 0.9762 1.9948 3.9070 11 1 0.8473 2.1765 1.4922 12 8 2.0139 -0.6844 -1.1857 13 6 2.2170 0.0643 -2.2812 14 8 1.9973 1.2520 -2.2505 15 6 2.7191 -0.5767 -3.5493 16 7 2.8569 0.4442 -4.5910 17 6 3.2944 0.0998 -5.8184 18 8 3.5742 -1.0580 -6.0612 19 6 3.4340 1.1301 -6.8695 20 6 3.8863 0.7766 -8.1417 21 6 4.0138 1.7429 -9.1182 22 6 3.6940 3.0597 -8.8387 23 6 3.2454 3.4168 -7.5795 24 6 3.1135 2.4603 -6.5940 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.9037 -0.5282 4.4374 29 1 2.0102 -1.3368 -3.8775 30 1 3.6881 -1.0397 -3.3635 31 1 2.6339 1.3681 -4.3972 32 1 4.1401 -0.2501 -8.3600 33 1 4.3641 1.4709 -10.1030 34 1 3.7951 3.8122 -9.6067 35 1 2.9978 4.4464 -7.3676 36 1 2.7628 2.7403 -5.6116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132301745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:56 Heat of formation + Delta-G solvation = -111.961743 kcal Electronic energy + Delta-G solvation = -20355.119039 eV Core-core repulsion = 16996.812577 eV Total energy + Delta-G solvation = -3358.306462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.82125 -41.04268 -39.25727 -37.96369 -35.79995 -35.33593 -32.86137 -32.36343 -31.88107 -29.32795 -27.36613 -24.99163 -23.77509 -23.27850 -21.67553 -21.62560 -19.78140 -18.91403 -18.53581 -17.61874 -17.47905 -17.25294 -16.87102 -16.32901 -16.16120 -15.57095 -15.46465 -15.06598 -14.72696 -14.51890 -14.37115 -14.22563 -14.12757 -13.63489 -13.46916 -13.37305 -12.86738 -12.63038 -12.25637 -12.03195 -11.86855 -11.72574 -11.49704 -11.29181 -11.23002 -10.85489 -10.49451 -9.96232 -9.93152 -8.45552 -6.55569 -0.18116 0.40846 1.04177 1.24546 1.31365 1.36715 1.41282 1.74901 2.19004 2.21511 2.87134 2.88052 3.46165 3.65164 3.90018 4.01581 4.15297 4.20021 4.23851 4.28470 4.38546 4.46258 4.49087 4.52464 4.70586 4.83946 5.00355 5.06015 5.17772 5.30513 5.33077 5.44050 5.50476 5.53713 5.94072 6.07635 6.26520 6.49070 6.68647 6.95158 7.08847 8.70471 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037035 B = 0.003232 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.861597 B = 8661.433212 C = 9160.256991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.194 3.806 3 H 0.038 0.962 4 C -0.544 4.544 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.931 5.931 8 Si 0.944 3.056 9 H -0.251 1.251 10 H -0.285 1.285 11 H -0.253 1.253 12 O -0.347 6.347 13 C 0.454 3.546 14 O -0.535 6.535 15 C 0.134 3.866 16 N -0.712 5.712 17 C 0.563 3.437 18 O -0.570 6.570 19 C -0.157 4.157 20 C -0.074 4.074 21 C -0.129 4.129 22 C -0.088 4.088 23 C -0.130 4.130 24 C -0.092 4.092 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.276 0.724 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.416 0.584 32 H 0.129 0.871 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 9.951 -24.853 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.140 3.860 3 H 0.056 0.944 4 C -0.581 4.581 5 H 0.065 0.935 6 C -0.171 4.171 7 N -0.569 5.569 8 Si 0.768 3.232 9 H -0.176 1.176 10 H -0.212 1.212 11 H -0.177 1.177 12 O -0.262 6.262 13 C 0.298 3.702 14 O -0.426 6.426 15 C 0.010 3.990 16 N -0.368 5.368 17 C 0.352 3.648 18 O -0.451 6.451 19 C -0.160 4.160 20 C -0.093 4.093 21 C -0.147 4.147 22 C -0.106 4.106 23 C -0.147 4.147 24 C -0.110 4.110 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.256 0.744 32 H 0.147 0.853 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.311 9.447 -24.711 26.457 hybrid contribution -0.382 0.602 1.066 1.283 sum -0.071 10.049 -23.645 25.692 Atomic orbital electron populations 1.22432 0.96006 1.02806 1.01026 1.20718 0.92215 0.93233 0.79854 0.94392 1.20964 1.33516 1.14138 0.89499 0.93541 1.25610 0.96923 1.00013 0.94571 1.69965 1.46101 1.41959 0.98844 0.85935 0.79732 0.79379 0.78125 1.17647 1.21152 1.17681 1.86498 1.75921 1.42978 1.20811 1.23856 0.74087 0.85799 0.86449 1.90572 1.49839 1.17448 1.84699 1.20667 1.05129 0.91178 0.82077 1.45666 1.67862 1.12920 1.10398 1.18633 0.75873 0.88361 0.81888 1.90764 1.51597 1.21053 1.81654 1.19819 1.07775 0.93655 0.94724 1.21413 0.95453 1.00911 0.91542 1.21495 1.00245 0.92912 1.00045 1.21836 0.94708 0.96778 0.97234 1.21499 0.99600 1.00522 0.93127 1.21576 0.97175 0.91640 1.00640 0.91153 0.92474 0.91943 0.91494 0.85438 0.86092 0.74390 0.85318 0.82743 0.82350 0.82837 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.95 9.03 71.98 0.65 -6.30 16 2 C 0.19 9.37 2.15 29.85 0.06 9.44 16 3 H 0.04 1.91 6.21 -2.39 -0.01 1.89 16 4 C -0.54 -31.26 9.48 25.60 0.24 -31.02 16 5 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 6 C 0.03 1.63 5.45 84.65 0.46 2.09 16 7 N -0.93 -56.38 13.96 21.45 0.30 -56.08 16 8 Si 0.94 42.85 24.37 68.60 1.67 44.53 16 9 H -0.25 -10.53 6.87 99.48 0.68 -9.84 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.25 -11.00 6.53 99.48 0.65 -10.35 16 12 O -0.35 -15.02 9.86 -51.45 -0.51 -15.52 16 13 C 0.45 16.21 8.00 71.23 0.57 16.78 16 14 O -0.53 -20.50 14.89 21.96 0.33 -20.17 16 15 C 0.13 3.70 6.27 85.63 0.54 4.24 16 16 N -0.71 -18.14 5.48 -469.70 -2.57 -20.71 16 17 C 0.56 15.04 7.77 86.79 0.67 15.72 16 18 O -0.57 -18.64 16.35 -3.89 -0.06 -18.70 16 19 C -0.16 -3.38 5.87 -20.09 -0.12 -3.50 16 20 C -0.07 -1.41 9.60 22.53 0.22 -1.19 16 21 C -0.13 -1.65 10.03 22.23 0.22 -1.43 16 22 C -0.09 -0.92 10.04 22.33 0.22 -0.69 16 23 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16 24 C -0.09 -1.56 9.54 22.53 0.21 -1.35 16 25 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.06 2.40 3.27 -2.39 -0.01 2.39 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.42 9.80 5.48 -92.71 -0.51 9.29 16 32 H 0.13 2.55 7.65 -2.91 -0.02 2.53 16 33 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.13 2.05 6.41 -2.91 -0.02 2.03 16 Total: -1.00 -71.29 310.79 3.86 -67.42 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.53 Total: 17.83 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 4.18 Total: 1.41 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -2.27 Total: -76.79 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.24 Total: -54.40 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.67 Total: 44.53 kcal Total: -71.29 3.86 -67.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132301745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.537 kcal (2) G-P(sol) polarization free energy of solvation -71.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds