Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34709 * 116.99945 * 2 1 4 4 O 1.21473 * 119.99806 * 0.02562 * 3 2 1 5 5 C 1.47721 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.39625 * 120.15414 * 180.02562 * 5 3 2 7 7 C 1.37946 * 119.84978 * 180.02562 * 6 5 3 8 8 C 1.38362 * 120.14976 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.84580 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.46743 * 90.00390 * 9 8 7 11 11 C 1.46506 * 120.00098 * 90.00098 * 10 9 8 12 12 C 1.34771 * 120.00308 * 269.99953 * 10 9 8 13 13 O 1.21693 * 119.99726 * 359.97438 * 12 10 9 14 14 C 1.46371 * 120.00549 * 180.02562 * 12 10 9 15 15 H 1.08001 * 120.00013 * 359.97438 * 14 12 10 16 16 C 1.40050 * 120.00736 * 180.02562 * 14 12 10 17 17 N 1.30674 * 119.99514 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00346 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47222 * 60.00236 * 18 16 14 20 20 H 1.48507 * 109.47054 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47284 * 299.99739 * 18 16 14 22 22 C 1.38365 * 120.30252 * 0.23763 * 8 7 6 23 23 C 1.37937 * 120.15188 * 359.48414 * 22 8 7 24 24 H 1.08999 * 109.46864 * 60.00151 * 1 2 3 25 25 H 1.09006 * 109.46921 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46910 * 299.99637 * 1 2 3 27 27 H 1.08007 * 120.07290 * 0.02562 * 6 5 3 28 28 H 1.08005 * 119.91987 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.47445 * 330.00724 * 9 8 7 30 30 H 1.09000 * 109.47150 * 210.00333 * 9 8 7 31 31 H 1.09001 * 109.47060 * 270.00243 * 11 10 9 32 32 H 1.09004 * 109.47073 * 29.99732 * 11 10 9 33 33 H 1.09000 * 109.47212 * 149.99814 * 11 10 9 34 34 H 0.97000 * 120.00227 * 180.02562 * 17 16 14 35 35 H 1.08000 * 119.92286 * 179.71797 * 22 8 7 36 36 H 1.07997 * 120.07822 * 180.25586 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.1760 2.5200 0.0011 7 6 5.5539 2.5849 0.0011 8 6 6.3044 1.4225 0.0000 9 6 7.8093 1.5015 -0.0005 10 7 8.2975 1.5260 1.3805 11 6 8.6080 0.2713 2.0702 12 6 8.4609 2.7028 2.0167 13 8 8.2035 3.7451 1.4437 14 6 8.9492 2.7275 3.3963 15 1 9.1781 1.8025 3.9048 16 6 9.1186 3.9503 4.0577 17 7 8.8411 5.0695 3.4427 18 14 9.7410 3.9816 5.8186 19 1 11.0843 3.3516 5.8800 20 1 9.8314 5.3881 6.2867 21 1 8.8015 3.2302 6.6891 22 6 5.6795 0.1881 -0.0060 23 6 4.3024 0.1086 -0.0002 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.5913 3.4281 0.0015 28 1 6.0480 3.5454 0.0011 29 1 8.1254 2.4096 -0.5138 30 1 8.2186 0.6321 -0.5152 31 1 7.7176 -0.0909 2.5840 32 1 8.9352 -0.4717 1.3428 33 1 9.4023 0.4429 2.7967 34 1 8.9587 5.9165 3.9005 35 1 6.2713 -0.7153 -0.0114 36 1 3.8159 -0.8556 -0.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153555679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = -92.265612 kcal Electronic energy + Delta-G solvation = -20860.727822 eV Core-core repulsion = 17503.275448 eV Total energy + Delta-G solvation = -3357.452373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49326 -38.95938 -37.40841 -36.39499 -34.11970 -32.47981 -31.70862 -30.75796 -28.36057 -27.08205 -25.96872 -24.69968 -22.66929 -22.31288 -20.60477 -19.19794 -17.92424 -17.07352 -16.48943 -16.37213 -15.64707 -15.43312 -14.79372 -14.55845 -14.49047 -14.01515 -13.72931 -13.49113 -13.26678 -12.84834 -12.52102 -12.23796 -12.11138 -11.64951 -11.55614 -11.31750 -11.29420 -11.16452 -10.91108 -10.89502 -10.69165 -10.46816 -10.28899 -10.18265 -8.88151 -8.75073 -8.67724 -7.62137 -7.33644 -6.23129 -4.68717 0.86882 1.64311 2.64299 2.67054 3.13392 3.18932 3.20205 3.93661 4.10554 4.50796 4.68977 4.74722 4.95312 5.03196 5.03428 5.16383 5.24468 5.35433 5.54397 5.65470 5.74540 5.88349 5.93832 6.02004 6.21307 6.24685 6.34253 6.41264 6.47640 6.51079 6.67334 6.92761 7.14115 7.41005 7.53806 7.75039 8.06704 8.27976 8.98458 9.34563 10.52273 10.70908 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022596 B = 0.004148 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.839418 B = 6749.389381 C = 7146.551662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.512 3.488 4 O -0.511 6.511 5 C -0.143 4.143 6 C -0.056 4.056 7 C -0.102 4.102 8 C -0.047 4.047 9 C 0.155 3.845 10 N -0.642 5.642 11 C 0.101 3.899 12 C 0.557 3.443 13 O -0.574 6.574 14 C -0.543 4.543 15 H 0.072 0.928 16 C 0.088 3.912 17 N -0.765 5.765 18 Si 0.906 3.094 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.268 1.268 22 C -0.129 4.129 23 C -0.069 4.069 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.133 0.867 28 H 0.144 0.856 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.269 0.731 35 H 0.126 0.874 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -11.891 -5.936 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.358 3.642 4 O -0.401 6.401 5 C -0.144 4.144 6 C -0.074 4.074 7 C -0.120 4.120 8 C -0.049 4.049 9 C 0.031 3.969 10 N -0.380 5.380 11 C -0.043 4.043 12 C 0.363 3.637 13 O -0.456 6.456 14 C -0.579 4.579 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.394 5.394 18 Si 0.731 3.269 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.193 1.193 22 C -0.147 4.147 23 C -0.087 4.087 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.161 0.839 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.203 -10.811 -6.235 15.506 hybrid contribution -0.047 -0.084 1.054 1.059 sum -9.250 -10.895 -5.181 15.202 Atomic orbital electron populations 1.23244 0.76374 1.03522 1.02560 1.86550 1.23261 1.32996 1.84569 1.21371 0.89349 0.81186 0.72303 1.90815 1.66889 1.36054 1.46312 1.18984 0.88242 0.95331 1.11861 1.21274 0.94822 0.96309 0.94988 1.21323 0.92599 0.99891 0.98230 1.20980 0.98213 0.92781 0.92911 1.20104 0.87521 1.02447 0.86831 1.48068 1.70615 1.07337 1.11991 1.21432 0.99956 0.86118 0.96787 1.18257 0.77795 0.80595 0.87039 1.90577 1.55762 1.31204 1.68056 1.20966 1.46852 0.93351 0.96756 0.91036 1.25723 0.93331 0.95150 0.99013 1.69997 1.34949 0.98026 1.36416 0.86456 0.79881 0.77823 0.82769 1.19238 1.20530 1.19273 1.21007 0.93955 0.97568 1.02191 1.21298 0.93869 0.97352 0.96169 0.91961 0.88134 0.91894 0.84935 0.83859 0.89628 0.91517 0.95072 0.93982 0.90827 0.92012 0.85591 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.56 9.82 -40.52 -0.40 -4.96 16 3 C 0.51 7.90 7.90 34.61 0.27 8.18 16 4 O -0.51 -9.00 16.14 -19.25 -0.31 -9.31 16 5 C -0.14 -2.25 5.87 -104.98 -0.62 -2.87 16 6 C -0.06 -0.95 9.60 -39.17 -0.38 -1.33 16 7 C -0.10 -1.89 9.68 -39.64 -0.38 -2.27 16 8 C -0.05 -0.81 5.47 -104.53 -0.57 -1.38 16 9 C 0.16 2.82 5.57 -5.19 -0.03 2.79 16 10 N -0.64 -13.86 2.86 -184.62 -0.53 -14.39 16 11 C 0.10 1.78 10.19 59.85 0.61 2.39 16 12 C 0.56 15.18 7.61 -12.99 -0.10 15.08 16 13 O -0.57 -17.45 14.10 5.20 0.07 -17.38 16 14 C -0.54 -14.86 8.74 -35.63 -0.31 -15.17 16 15 H 0.07 1.79 6.00 -52.49 -0.31 1.47 16 16 C 0.09 2.40 5.50 -17.36 -0.10 2.30 16 17 N -0.77 -22.41 11.83 55.55 0.66 -21.75 16 18 Si 0.91 19.82 29.56 -169.99 -5.02 14.79 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 C -0.13 -1.85 9.68 -39.64 -0.38 -2.24 16 23 C -0.07 -0.96 9.62 -39.17 -0.38 -1.33 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.13 2.20 7.65 -52.48 -0.40 1.80 16 28 H 0.14 2.95 7.56 -52.48 -0.40 2.55 16 29 H 0.09 1.70 7.36 -51.93 -0.38 1.32 16 30 H 0.07 0.97 7.83 -51.93 -0.41 0.57 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.59 7.89 -51.93 -0.41 0.18 16 33 H 0.07 1.34 6.09 -51.93 -0.32 1.03 16 34 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.13 1.50 7.61 -52.49 -0.40 1.10 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -34.04 318.51 -6.30 -40.33 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.27 Total: 2.29 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.29 Total: 5.56 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.13 Total: -36.14 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.64 Total: -31.65 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.04 -6.30 -40.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153555679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.931 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds