Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34709 * 116.99945 * 2 1 4 4 O 1.21473 * 119.99806 * 0.02562 * 3 2 1 5 5 C 1.47721 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.39625 * 120.15414 * 180.02562 * 5 3 2 7 7 C 1.37946 * 119.84978 * 180.02562 * 6 5 3 8 8 C 1.38362 * 120.14976 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.84580 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.46743 * 90.00390 * 9 8 7 11 11 C 1.46506 * 120.00098 * 90.00098 * 10 9 8 12 12 C 1.34771 * 120.00308 * 269.99953 * 10 9 8 13 13 O 1.21693 * 119.99726 * 359.97438 * 12 10 9 14 14 C 1.46371 * 120.00549 * 180.02562 * 12 10 9 15 15 H 1.08001 * 120.00013 * 359.97438 * 14 12 10 16 16 C 1.40050 * 120.00736 * 180.02562 * 14 12 10 17 17 N 1.30674 * 119.99514 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00346 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47222 * 60.00236 * 18 16 14 20 20 H 1.48507 * 109.47054 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47284 * 299.99739 * 18 16 14 22 22 C 1.38365 * 120.30252 * 0.23763 * 8 7 6 23 23 C 1.37937 * 120.15188 * 359.48414 * 22 8 7 24 24 H 1.08999 * 109.46864 * 60.00151 * 1 2 3 25 25 H 1.09006 * 109.46921 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46910 * 299.99637 * 1 2 3 27 27 H 1.08007 * 120.07290 * 0.02562 * 6 5 3 28 28 H 1.08005 * 119.91987 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.47445 * 330.00724 * 9 8 7 30 30 H 1.09000 * 109.47150 * 210.00333 * 9 8 7 31 31 H 1.09001 * 109.47060 * 270.00243 * 11 10 9 32 32 H 1.09004 * 109.47073 * 29.99732 * 11 10 9 33 33 H 1.09000 * 109.47212 * 149.99814 * 11 10 9 34 34 H 0.97000 * 120.00227 * 180.02562 * 17 16 14 35 35 H 1.08000 * 119.92286 * 179.71797 * 22 8 7 36 36 H 1.07997 * 120.07822 * 180.25586 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.1760 2.5200 0.0011 7 6 5.5539 2.5849 0.0011 8 6 6.3044 1.4225 0.0000 9 6 7.8093 1.5015 -0.0005 10 7 8.2975 1.5260 1.3805 11 6 8.6080 0.2713 2.0702 12 6 8.4609 2.7028 2.0167 13 8 8.2035 3.7451 1.4437 14 6 8.9492 2.7275 3.3963 15 1 9.1781 1.8025 3.9048 16 6 9.1186 3.9503 4.0577 17 7 8.8411 5.0695 3.4427 18 14 9.7410 3.9816 5.8186 19 1 11.0843 3.3516 5.8800 20 1 9.8314 5.3881 6.2867 21 1 8.8015 3.2302 6.6891 22 6 5.6795 0.1881 -0.0060 23 6 4.3024 0.1086 -0.0002 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.5913 3.4281 0.0015 28 1 6.0480 3.5454 0.0011 29 1 8.1254 2.4096 -0.5138 30 1 8.2186 0.6321 -0.5152 31 1 7.7176 -0.0909 2.5840 32 1 8.9352 -0.4717 1.3428 33 1 9.4023 0.4429 2.7967 34 1 8.9587 5.9165 3.9005 35 1 6.2713 -0.7153 -0.0114 36 1 3.8159 -0.8556 -0.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153555679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = -113.970131 kcal Electronic energy + Delta-G solvation = -20861.669000 eV Core-core repulsion = 17503.275448 eV Total energy + Delta-G solvation = -3358.393552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66464 -40.34522 -39.12707 -37.54350 -35.90787 -34.55974 -33.09546 -32.02572 -29.59423 -28.44173 -27.61911 -26.24815 -24.00713 -23.59074 -21.89792 -20.96699 -19.11396 -18.36824 -18.19974 -17.61078 -17.42972 -16.78684 -16.32933 -16.15699 -15.74338 -15.56579 -15.06513 -14.54668 -14.49365 -14.27743 -14.15462 -13.51617 -13.39928 -13.11556 -13.05091 -13.03728 -12.77245 -12.68866 -12.60423 -12.15749 -12.06545 -11.90252 -11.85837 -11.69277 -10.89735 -10.08714 -9.99336 -9.63827 -9.08066 -8.25914 -6.80883 -0.39933 0.38371 1.38994 1.41424 1.43251 1.54099 1.62122 2.24854 2.48975 2.65682 3.13658 3.58123 3.67634 3.82035 3.96940 3.99581 4.25228 4.30012 4.32214 4.40753 4.57177 4.65782 4.68310 4.75148 4.86840 4.98000 5.03825 5.10569 5.13868 5.22434 5.37074 5.39889 5.58273 5.80458 5.88304 6.17127 6.42128 6.60219 6.90880 7.44275 8.50982 8.70405 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022596 B = 0.004148 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.839418 B = 6749.389381 C = 7146.551662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.516 3.484 4 O -0.542 6.542 5 C -0.149 4.149 6 C -0.069 4.069 7 C -0.126 4.126 8 C -0.060 4.060 9 C 0.155 3.845 10 N -0.644 5.644 11 C 0.098 3.902 12 C 0.540 3.460 13 O -0.622 6.622 14 C -0.570 4.570 15 H 0.092 0.908 16 C 0.030 3.970 17 N -0.821 5.821 18 Si 0.990 3.010 19 H -0.252 1.252 20 H -0.278 1.278 21 H -0.257 1.257 22 C -0.113 4.113 23 C -0.052 4.052 24 H 0.063 0.937 25 H 0.140 0.860 26 H 0.059 0.941 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.115 0.885 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.272 0.728 35 H 0.168 0.832 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.134 -16.051 -5.127 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.363 3.637 4 O -0.434 6.434 5 C -0.150 4.150 6 C -0.087 4.087 7 C -0.145 4.145 8 C -0.062 4.062 9 C 0.032 3.968 10 N -0.380 5.380 11 C -0.045 4.045 12 C 0.346 3.654 13 O -0.508 6.508 14 C -0.607 4.607 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.451 5.451 18 Si 0.810 3.190 19 H -0.175 1.175 20 H -0.203 1.203 21 H -0.181 1.181 22 C -0.131 4.131 23 C -0.070 4.070 24 H 0.082 0.918 25 H 0.158 0.842 26 H 0.078 0.922 27 H 0.141 0.859 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.185 0.815 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.492 -15.054 -5.446 18.611 hybrid contribution -0.065 1.095 0.700 1.301 sum -9.557 -13.959 -4.746 17.571 Atomic orbital electron populations 1.23631 0.74147 1.06145 1.02557 1.86525 1.25326 1.31029 1.83780 1.21299 0.89162 0.81619 0.71665 1.90805 1.67471 1.37288 1.47788 1.19131 0.89007 0.95338 1.11516 1.21180 0.94210 0.97224 0.96083 1.21093 0.93407 0.99224 1.00757 1.20939 0.97498 0.93564 0.94186 1.20242 0.88479 1.02996 0.85065 1.47884 1.69753 1.07216 1.13177 1.21636 1.00110 0.85018 0.97757 1.18593 0.77565 0.81677 0.87605 1.90543 1.57479 1.33634 1.69172 1.21525 1.47114 0.94530 0.97484 0.89010 1.26936 0.92914 0.94406 1.04297 1.70184 1.36890 0.98986 1.39009 0.85175 0.79836 0.78039 0.75928 1.17536 1.20291 1.18091 1.21357 0.94436 0.97372 0.99938 1.21699 0.93629 0.97962 0.93665 0.91815 0.84158 0.92191 0.85927 0.87826 0.92932 0.86706 0.94137 0.89326 0.91967 0.91843 0.81454 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -7.96 9.82 -56.19 -0.55 -8.51 16 3 C 0.52 15.33 7.90 70.33 0.56 15.89 16 4 O -0.54 -19.16 16.14 19.93 0.32 -18.84 16 5 C -0.15 -4.53 5.87 -20.10 -0.12 -4.65 16 6 C -0.07 -2.47 9.60 22.54 0.22 -2.25 16 7 C -0.13 -4.98 9.68 22.23 0.22 -4.76 16 8 C -0.06 -2.04 5.47 -19.80 -0.11 -2.15 16 9 C 0.16 5.57 5.57 85.63 0.48 6.04 16 10 N -0.64 -27.48 2.86 -856.25 -2.45 -29.93 16 11 C 0.10 3.13 10.19 127.77 1.30 4.43 16 12 C 0.54 30.42 7.61 86.36 0.66 31.08 16 13 O -0.62 -40.32 14.10 -4.33 -0.06 -40.39 16 14 C -0.57 -31.66 8.74 24.83 0.22 -31.44 16 15 H 0.09 4.53 6.00 -2.91 -0.02 4.51 16 16 C 0.03 1.64 5.50 85.30 0.47 2.11 16 17 N -0.82 -50.26 11.83 21.84 0.26 -50.00 16 18 Si 0.99 40.87 29.56 68.60 2.03 42.90 16 19 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 20 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.11 -2.83 9.68 22.23 0.22 -2.62 16 23 C -0.05 -1.25 9.62 22.54 0.22 -1.04 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.14 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.12 4.48 7.65 -2.91 -0.02 4.46 16 28 H 0.10 4.84 7.56 -2.91 -0.02 4.82 16 29 H 0.05 2.21 7.36 -2.39 -0.02 2.19 16 30 H 0.11 2.95 7.83 -2.39 -0.02 2.93 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 2.02 7.89 -2.38 -0.02 2.00 16 33 H 0.06 2.13 6.09 -2.39 -0.01 2.12 16 34 H 0.27 15.24 8.29 -92.71 -0.77 14.48 16 35 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.17 2.88 7.61 -2.91 -0.02 2.86 16 Total: -1.00 -80.03 318.51 6.16 -73.87 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.10 Total: 18.64 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 5.51 Total: 12.27 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -2.19 Total: -79.93 kcal Atomic # 8 Polarization: -67.44 SS G_CDS: -0.29 Total: -67.74 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -80.03 6.16 -73.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153555679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.101 kcal (2) G-P(sol) polarization free energy of solvation -80.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds