Wall clock time and date at job start Mon Mar 30 2020 01:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.51383 * 2 1 4 4 C 1.52880 * 109.62705 * 240.00665 * 2 1 3 5 5 N 1.47149 * 108.60758 * 187.90273 * 4 2 1 6 6 S 1.65600 * 120.97834 * 230.49735 * 5 4 2 7 7 O 1.42098 * 104.27576 * 153.64797 * 6 5 4 8 8 O 1.42102 * 104.27841 * 25.78924 * 6 5 4 9 9 C 1.81400 * 104.45288 * 269.71935 * 6 5 4 10 10 C 1.52992 * 109.47583 * 180.02562 * 9 6 5 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.47147 * 118.03722 * 50.22582 * 5 4 2 21 21 C 1.53291 * 108.38412 * 309.71408 * 20 5 4 22 22 O 1.42965 * 109.22457 * 52.30796 * 21 20 5 23 23 H 1.08999 * 109.47466 * 299.90538 * 1 2 3 24 24 H 1.09006 * 109.46831 * 59.90188 * 1 2 3 25 25 H 1.09003 * 109.47509 * 179.89841 * 1 2 3 26 26 H 1.09000 * 109.61687 * 68.07626 * 4 2 1 27 27 H 1.09004 * 109.52091 * 307.66218 * 4 2 1 28 28 H 1.09002 * 109.47172 * 59.99879 * 9 6 5 29 29 H 1.09001 * 109.46713 * 300.00132 * 9 6 5 30 30 H 1.09002 * 109.47103 * 59.99669 * 10 9 6 31 31 H 1.08998 * 109.46862 * 300.00481 * 10 9 6 32 32 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 34 34 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.68263 * 69.44046 * 20 5 4 36 36 H 1.09004 * 109.68211 * 189.95221 * 20 5 4 37 37 H 1.09009 * 109.51259 * 172.22743 * 21 20 5 38 38 H 1.09004 * 109.51709 * 292.32777 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0435 -0.7198 -1.2471 5 7 3.5023 -0.8750 -1.1325 6 16 4.5078 -0.4165 -2.3658 7 8 5.7382 -0.1163 -1.7214 8 8 3.7787 0.5882 -3.0573 9 6 4.6728 -1.9032 -3.3919 10 6 5.5903 -1.6043 -4.5791 11 6 5.7300 -2.8585 -5.4443 12 6 6.6333 -2.5638 -6.6140 13 1 7.0650 -1.5805 -6.7287 14 6 6.9095 -3.5499 -7.5373 15 7 7.6981 -3.2929 -8.5578 16 14 6.1634 -5.2509 -7.3385 17 1 4.8569 -5.3037 -8.0426 18 1 7.0800 -6.2644 -7.9196 19 1 5.9600 -5.5367 -5.8956 20 6 4.0415 -1.4440 0.1128 21 6 3.4311 -0.6839 1.2957 22 8 2.0074 -0.6758 1.1659 23 1 -0.3634 0.5123 0.8908 24 1 -0.3633 0.5154 -0.8892 25 1 -0.3634 -1.0277 -0.0018 26 1 1.8053 -0.1316 -2.1333 27 1 1.5746 -1.7011 -1.3203 28 1 3.6907 -2.2031 -3.7577 29 1 5.1006 -2.7099 -2.7966 30 1 6.5723 -1.3047 -4.2130 31 1 5.1629 -0.7975 -5.1744 32 1 4.7481 -3.1585 -5.8104 33 1 6.1576 -3.6650 -4.8486 34 1 7.8922 -3.9865 -9.2075 35 1 3.7772 -2.4994 0.1788 36 1 5.1261 -1.3358 0.1264 37 1 3.7088 -1.1767 2.2276 38 1 3.8028 0.3408 1.3010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170887487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:24 Heat of formation + Delta-G solvation = -125.790689 kcal Electronic energy + Delta-G solvation = -20188.675562 eV Core-core repulsion = 16965.213383 eV Total energy + Delta-G solvation = -3223.462178 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.64673 -37.12558 -35.91987 -35.04722 -34.83977 -33.20672 -32.24284 -28.86309 -28.40377 -26.19020 -23.69942 -23.32126 -21.28969 -20.47000 -18.94622 -17.85244 -16.96889 -16.93463 -16.30849 -16.12363 -15.44880 -15.20026 -15.01567 -14.43452 -14.31241 -14.18538 -13.12793 -12.95014 -12.65364 -12.56683 -12.38527 -12.25076 -12.19634 -12.10551 -11.99433 -11.67071 -11.63194 -11.47879 -11.04112 -10.97556 -10.75177 -10.45934 -10.12742 -9.90342 -9.72165 -9.30586 -8.97789 -8.61174 -6.10807 -4.10310 0.26054 2.53078 3.24704 3.32444 3.34339 3.42207 3.85674 4.09342 4.37882 4.38214 4.46285 4.70953 4.81066 4.84422 4.96158 5.02959 5.09852 5.10971 5.22858 5.26803 5.34769 5.41406 5.52769 5.61413 5.70980 5.78348 5.88072 6.07362 6.22082 6.25198 6.62785 6.86833 7.09058 7.23068 7.68285 8.44985 8.93380 9.50198 11.02480 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.003950 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.661948 B = 7086.616766 C = 7261.046531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.064 0.936 4 C 0.087 3.913 5 N -1.008 6.008 6 S 2.599 3.401 7 O -0.956 6.956 8 O -0.956 6.956 9 C -0.613 4.613 10 C -0.098 4.098 11 C -0.004 4.004 12 C -0.528 4.528 13 H 0.075 0.925 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.081 3.919 21 C 0.053 3.947 22 O -0.378 6.378 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.016 0.984 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.413 3.418 19.978 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.017 3.983 3 H 0.082 0.918 4 C -0.039 4.039 5 N -0.846 5.846 6 S 2.696 3.304 7 O -0.946 6.946 8 O -0.946 6.946 9 C -0.745 4.745 10 C -0.137 4.137 11 C -0.043 4.043 12 C -0.566 4.566 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.538 5.538 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.045 4.045 21 C -0.026 4.026 22 O -0.297 6.297 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.095 0.905 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.072 4.125 19.861 24.132 hybrid contribution -0.249 -1.606 -0.378 1.668 sum -13.321 2.519 19.483 23.736 Atomic orbital electron populations 1.21748 0.92206 1.03270 1.02979 1.22337 0.95416 0.95510 0.85079 0.91763 1.22112 0.79562 1.02040 1.00171 1.57998 1.16802 1.80180 1.29582 1.05439 0.73452 0.77307 0.74155 1.93562 1.44213 1.83385 1.73476 1.93562 1.72059 1.54681 1.74332 1.30628 1.10174 1.20368 1.13280 1.21325 0.96979 1.02380 0.93048 1.19530 0.97121 0.92519 0.95111 1.21130 1.28670 0.99937 1.06856 0.90725 1.25025 0.94689 0.98780 0.94894 1.69910 1.36627 1.34076 1.13218 0.86772 0.79298 0.84372 0.78793 1.20195 1.21220 1.19088 1.22150 1.00210 0.98237 0.83860 1.22887 0.81210 1.00386 0.98084 1.87937 1.20924 1.77574 1.43220 0.91458 0.90537 0.91502 0.87706 0.90535 0.85417 0.85413 0.90969 0.90988 0.96606 0.96170 0.92592 0.90523 0.87670 0.87633 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.57 37.16 0.36 -0.66 16 2 C 0.08 0.71 3.38 -26.79 -0.09 0.62 16 3 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.09 0.85 5.94 -3.75 -0.02 0.82 16 5 N -1.01 -11.25 3.28 -113.30 -0.37 -11.62 16 6 S 2.60 36.96 5.47 -107.50 -0.59 36.37 16 7 O -0.96 -15.99 16.62 -57.54 -0.96 -16.94 16 8 O -0.96 -16.00 16.61 -57.54 -0.96 -16.96 16 9 C -0.61 -8.80 6.18 37.15 0.23 -8.57 16 10 C -0.10 -1.90 5.16 -26.74 -0.14 -2.04 16 11 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 12 C -0.53 -15.00 9.66 -34.44 -0.33 -15.34 16 13 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 16 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 20 C 0.08 0.76 6.67 -3.54 -0.02 0.74 16 21 C 0.05 0.46 6.98 37.31 0.26 0.72 16 22 O -0.38 -3.86 10.39 -35.23 -0.37 -4.22 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.10 1.02 6.87 -51.93 -0.36 0.66 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 29 H 0.13 1.60 8.14 -51.92 -0.42 1.17 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 33 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.11 0.98 6.88 -51.93 -0.36 0.62 16 37 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 320.12 15.07 4.82 4.82 Total: -1.00 -35.09 320.12 -8.42 -43.51 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -6.14 Total: -2.73 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 0.03 Total: -22.04 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.40 Total: -38.49 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -2.28 Total: -38.13 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 36.96 SS G_CDS: -0.59 Total: 36.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.09 -8.42 -43.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.278 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds