Wall clock time and date at job start Mon Mar 30 2020 01:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.51383 * 2 1 4 4 C 1.52880 * 109.62705 * 240.00665 * 2 1 3 5 5 N 1.47149 * 108.60758 * 187.90273 * 4 2 1 6 6 S 1.65600 * 120.97834 * 230.49735 * 5 4 2 7 7 O 1.42098 * 104.27576 * 153.64797 * 6 5 4 8 8 O 1.42102 * 104.27841 * 25.78924 * 6 5 4 9 9 C 1.81400 * 104.45288 * 269.71935 * 6 5 4 10 10 C 1.52992 * 109.47583 * 180.02562 * 9 6 5 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.47147 * 118.03722 * 50.22582 * 5 4 2 21 21 C 1.53291 * 108.38412 * 309.71408 * 20 5 4 22 22 O 1.42965 * 109.22457 * 52.30796 * 21 20 5 23 23 H 1.08999 * 109.47466 * 299.90538 * 1 2 3 24 24 H 1.09006 * 109.46831 * 59.90188 * 1 2 3 25 25 H 1.09003 * 109.47509 * 179.89841 * 1 2 3 26 26 H 1.09000 * 109.61687 * 68.07626 * 4 2 1 27 27 H 1.09004 * 109.52091 * 307.66218 * 4 2 1 28 28 H 1.09002 * 109.47172 * 59.99879 * 9 6 5 29 29 H 1.09001 * 109.46713 * 300.00132 * 9 6 5 30 30 H 1.09002 * 109.47103 * 59.99669 * 10 9 6 31 31 H 1.08998 * 109.46862 * 300.00481 * 10 9 6 32 32 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 34 34 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.68263 * 69.44046 * 20 5 4 36 36 H 1.09004 * 109.68211 * 189.95221 * 20 5 4 37 37 H 1.09009 * 109.51259 * 172.22743 * 21 20 5 38 38 H 1.09004 * 109.51709 * 292.32777 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0435 -0.7198 -1.2471 5 7 3.5023 -0.8750 -1.1325 6 16 4.5078 -0.4165 -2.3658 7 8 5.7382 -0.1163 -1.7214 8 8 3.7787 0.5882 -3.0573 9 6 4.6728 -1.9032 -3.3919 10 6 5.5903 -1.6043 -4.5791 11 6 5.7300 -2.8585 -5.4443 12 6 6.6333 -2.5638 -6.6140 13 1 7.0650 -1.5805 -6.7287 14 6 6.9095 -3.5499 -7.5373 15 7 7.6981 -3.2929 -8.5578 16 14 6.1634 -5.2509 -7.3385 17 1 4.8569 -5.3037 -8.0426 18 1 7.0800 -6.2644 -7.9196 19 1 5.9600 -5.5367 -5.8956 20 6 4.0415 -1.4440 0.1128 21 6 3.4311 -0.6839 1.2957 22 8 2.0074 -0.6758 1.1659 23 1 -0.3634 0.5123 0.8908 24 1 -0.3633 0.5154 -0.8892 25 1 -0.3634 -1.0277 -0.0018 26 1 1.8053 -0.1316 -2.1333 27 1 1.5746 -1.7011 -1.3203 28 1 3.6907 -2.2031 -3.7577 29 1 5.1006 -2.7099 -2.7966 30 1 6.5723 -1.3047 -4.2130 31 1 5.1629 -0.7975 -5.1744 32 1 4.7481 -3.1585 -5.8104 33 1 6.1576 -3.6650 -4.8486 34 1 7.8922 -3.9865 -9.2075 35 1 3.7772 -2.4994 0.1788 36 1 5.1261 -1.3358 0.1264 37 1 3.7088 -1.1767 2.2276 38 1 3.8028 0.3408 1.3010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170887487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:23 Heat of formation + Delta-G solvation = -152.456839 kcal Electronic energy + Delta-G solvation = -20189.831893 eV Core-core repulsion = 16965.213383 eV Total energy + Delta-G solvation = -3224.618509 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36961 -38.34554 -37.14076 -36.53979 -35.84868 -34.27160 -33.86033 -30.19524 -29.52186 -26.94775 -25.37380 -24.11996 -22.27108 -21.94744 -19.98545 -19.00145 -18.86652 -17.76530 -17.38503 -17.20846 -16.39560 -16.26855 -16.11156 -15.76655 -15.55164 -15.20919 -14.83508 -14.09881 -13.83132 -13.69949 -13.49068 -13.31068 -13.27175 -13.23252 -13.15347 -12.74601 -12.71980 -12.61077 -12.59252 -12.13208 -11.86611 -11.67505 -11.55926 -11.43377 -11.30085 -11.13592 -10.79131 -9.82025 -8.31483 -6.37758 -0.86596 1.35911 1.38495 1.50078 1.54516 2.35105 2.72701 2.78456 3.03454 3.04421 3.50297 3.72644 3.78070 3.87569 4.06295 4.16296 4.18945 4.29932 4.37904 4.43609 4.55949 4.64838 4.72907 4.80807 4.84104 4.90669 4.92817 4.98365 5.12497 5.30462 5.31628 5.41896 5.45579 5.60530 6.18251 6.23218 6.70456 7.27055 8.85550 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.003950 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.661948 B = 7086.616766 C = 7261.046531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.053 0.947 4 C 0.080 3.920 5 N -1.003 6.003 6 S 2.616 3.384 7 O -0.986 6.986 8 O -0.986 6.986 9 C -0.606 4.606 10 C -0.104 4.104 11 C -0.005 4.005 12 C -0.546 4.546 13 H 0.029 0.971 14 C 0.001 3.999 15 N -0.952 5.952 16 Si 0.956 3.044 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.239 1.239 20 C 0.074 3.926 21 C 0.048 3.952 22 O -0.387 6.387 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.550 1.254 21.906 26.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.071 0.929 4 C -0.045 4.045 5 N -0.842 5.842 6 S 2.714 3.286 7 O -0.976 6.976 8 O -0.976 6.976 9 C -0.737 4.737 10 C -0.143 4.143 11 C -0.043 4.043 12 C -0.584 4.584 13 H 0.048 0.952 14 C -0.196 4.196 15 N -0.592 5.592 16 Si 0.778 3.222 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.162 1.162 20 C -0.051 4.051 21 C -0.030 4.030 22 O -0.306 6.306 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.172 0.828 29 H 0.172 0.828 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.150 0.850 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.212 1.984 21.805 26.661 hybrid contribution 0.448 -0.831 -0.957 1.344 sum -14.764 1.153 20.849 25.573 Atomic orbital electron populations 1.21757 0.90453 1.03924 1.03690 1.22453 0.96828 0.94816 0.84762 0.92921 1.22345 0.78494 1.03350 1.00312 1.57718 1.17150 1.80200 1.29146 1.04671 0.72855 0.76920 0.74130 1.93520 1.45994 1.83955 1.74132 1.93520 1.72566 1.56184 1.75367 1.30530 1.10471 1.21274 1.11466 1.21190 0.98018 1.00542 0.94591 1.19503 0.96446 0.94553 0.93826 1.21555 1.29419 0.98290 1.09100 0.95220 1.26119 0.95130 1.04041 0.94270 1.70084 1.38650 1.35921 1.14581 0.85582 0.78503 0.77747 0.80364 1.18891 1.21070 1.16217 1.22407 1.00243 0.99502 0.82939 1.23046 0.80639 1.00243 0.99033 1.87933 1.21573 1.77570 1.43517 0.91245 0.89398 0.90830 0.87952 0.88324 0.82811 0.82840 0.91903 0.91891 0.95070 0.94944 0.92384 0.88212 0.87820 0.85050 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.57 71.98 0.69 -0.97 16 2 C 0.07 1.19 3.38 30.55 0.10 1.29 16 3 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 4 C 0.08 1.37 5.94 86.22 0.51 1.88 16 5 N -1.00 -20.15 3.28 -512.38 -1.68 -21.83 16 6 S 2.62 71.27 5.47 -56.49 -0.31 70.96 16 7 O -0.99 -32.51 16.62 -127.65 -2.12 -34.63 16 8 O -0.99 -32.60 16.61 -127.65 -2.12 -34.72 16 9 C -0.61 -15.80 6.18 71.98 0.44 -15.36 16 10 C -0.10 -3.96 5.16 30.59 0.16 -3.81 16 11 C 0.00 -0.21 4.04 29.85 0.12 -0.09 16 12 C -0.55 -31.63 9.66 25.60 0.25 -31.38 16 13 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 14 C 0.00 0.07 5.47 84.66 0.46 0.53 16 15 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 16 Si 0.96 43.01 27.47 68.60 1.88 44.90 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 20 C 0.07 1.19 6.67 86.35 0.58 1.77 16 21 C 0.05 0.74 6.98 72.08 0.50 1.25 16 22 O -0.39 -7.02 10.39 -148.98 -1.55 -8.56 16 23 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 26 H 0.10 1.81 6.87 -2.39 -0.02 1.79 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.15 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.15 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 33 H 0.03 1.38 7.20 -2.39 -0.02 1.37 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 1.72 6.88 -2.38 -0.02 1.71 16 37 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -77.34 320.12 -0.81 -78.15 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.97 Total: 10.38 kcal Atomic # 6 Polarization: -48.70 SS G_CDS: 3.82 Total: -44.89 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.38 Total: -81.58 kcal Atomic # 8 Polarization: -72.13 SS G_CDS: -5.79 Total: -77.92 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.90 kcal Atomic # 16 Polarization: 71.27 SS G_CDS: -0.31 Total: 70.96 kcal Total: -77.34 -0.81 -78.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.309 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds