Wall clock time and date at job start Mon Mar 30 2020 01:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47395 * 2 1 4 4 C 1.50699 * 109.46954 * 120.00043 * 2 1 3 5 5 H 1.08010 * 119.99818 * 119.99948 * 4 2 1 6 6 C 1.37880 * 120.00374 * 299.99549 * 4 2 1 7 7 N 1.31513 * 119.99690 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00305 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46930 * 60.00070 * 8 6 4 10 10 H 1.48493 * 109.46892 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46993 * 300.00092 * 8 6 4 12 12 N 1.46499 * 109.47175 * 239.99660 * 2 1 3 13 13 S 1.65605 * 119.99510 * 94.99873 * 12 2 1 14 14 O 1.42092 * 104.27847 * 308.93014 * 13 12 2 15 15 O 1.42105 * 104.27601 * 181.07475 * 13 12 2 16 16 C 1.81401 * 104.44827 * 65.00461 * 13 12 2 17 17 C 1.53002 * 109.46758 * 179.97438 * 16 13 12 18 18 H 1.08993 * 109.49165 * 305.02502 * 17 16 13 19 19 C 1.53096 * 109.47810 * 184.99713 * 17 16 13 20 20 C 1.53173 * 109.16177 * 182.40899 * 19 17 16 21 21 C 1.53181 * 109.03676 * 56.98730 * 20 19 17 22 22 C 1.53100 * 109.15732 * 303.01504 * 21 20 19 23 23 O 1.42899 * 109.41499 * 57.61360 * 22 21 20 24 24 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46983 * 299.99967 * 1 2 3 26 26 H 1.08991 * 109.47077 * 59.99959 * 1 2 3 27 27 H 0.96996 * 120.00117 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00297 * 275.00438 * 12 2 1 29 29 H 1.08999 * 109.47113 * 59.99936 * 16 13 12 30 30 H 1.08998 * 109.46854 * 299.99504 * 16 13 12 31 31 H 1.08998 * 109.52422 * 302.31997 * 19 17 16 32 32 H 1.09003 * 109.51754 * 62.44233 * 19 17 16 33 33 H 1.08999 * 109.54116 * 176.84420 * 20 19 17 34 34 H 1.08997 * 109.54950 * 297.02648 * 20 19 17 35 35 H 1.08988 * 109.52544 * 62.91818 * 21 20 19 36 36 H 1.08996 * 109.52230 * 183.04989 * 21 20 19 37 37 H 1.08996 * 109.47674 * 177.59246 * 22 21 20 38 38 H 1.09003 * 109.48101 * 297.61458 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9429 0.8297 2.6035 8 14 2.3226 -1.1196 4.0080 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4199 5.2204 11 1 1.8280 -2.5198 4.0082 12 7 2.0184 -0.6907 -1.1961 13 16 2.4122 0.1772 -2.5505 14 8 1.2752 0.9966 -2.7845 15 8 2.8122 -0.8076 -3.4937 16 6 3.8314 1.1872 -2.0440 17 6 4.2941 2.0443 -3.2239 18 1 4.5006 1.4029 -4.0806 19 6 5.5660 2.8030 -2.8359 20 6 5.9889 3.7041 -4.0001 21 6 4.8329 4.6470 -4.3476 22 6 3.5893 3.8171 -4.6772 23 8 3.2686 2.9794 -3.5648 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7089 1.1613 3.4844 28 1 2.1110 -1.6562 -1.1948 29 1 4.6459 0.5361 -1.7268 30 1 3.5400 1.8342 -1.2167 31 1 5.3712 3.4140 -1.9545 32 1 6.3621 2.0913 -2.6170 33 1 6.8618 4.2889 -3.7101 34 1 6.2332 3.0897 -4.8667 35 1 4.6232 5.2952 -3.4968 36 1 5.1054 5.2550 -5.2102 37 1 2.7518 4.4835 -4.8837 38 1 3.7864 3.1990 -5.5531 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171092867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:02 Heat of formation + Delta-G solvation = -136.047126 kcal Electronic energy + Delta-G solvation = -20715.461287 eV Core-core repulsion = 17491.554356 eV Total energy + Delta-G solvation = -3223.906931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.49904 -36.46467 -35.44119 -35.17548 -33.75998 -32.96339 -32.17464 -28.23919 -28.07896 -25.19410 -24.43478 -22.62282 -20.91114 -20.44040 -18.62878 -17.41223 -16.55981 -16.31780 -16.07342 -15.70966 -15.24049 -14.72717 -14.59008 -14.54322 -13.61353 -13.47142 -12.89597 -12.69318 -12.59112 -12.37900 -12.14958 -11.63122 -11.49299 -11.45619 -11.33863 -11.23663 -11.12021 -10.99010 -10.96204 -10.57878 -10.54913 -10.28715 -10.19914 -10.05624 -9.50984 -9.12265 -8.60444 -8.23059 -6.13371 -4.22591 0.92884 3.24676 3.30423 3.31598 3.51853 3.61083 4.26373 4.36148 4.57887 4.66755 4.70108 4.79047 4.86870 5.00216 5.06118 5.17571 5.28496 5.43775 5.51609 5.59069 5.66262 5.75518 5.85723 5.88785 6.03062 6.15770 6.37345 6.87901 7.11056 7.13720 7.16539 7.60363 7.74246 7.86517 8.06815 8.30309 8.81453 9.44175 10.91884 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022731 B = 0.005265 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.514149 B = 5316.573408 C = 5784.340094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.274 3.726 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -1.105 6.105 13 S 2.613 3.387 14 O -0.945 6.945 15 O -0.986 6.986 16 C -0.632 4.632 17 C 0.101 3.899 18 H 0.069 0.931 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.158 4.158 22 C 0.058 3.942 23 O -0.370 6.370 24 H 0.030 0.970 25 H 0.089 0.911 26 H 0.028 0.972 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.074 5.298 -10.826 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.169 3.831 3 H 0.057 0.943 4 C -0.569 4.569 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.865 5.865 13 S 2.704 3.296 14 O -0.935 6.935 15 O -0.977 6.977 16 C -0.759 4.759 17 C 0.042 3.958 18 H 0.086 0.914 19 C -0.182 4.182 20 C -0.162 4.162 21 C -0.196 4.196 22 C -0.019 4.019 23 O -0.289 6.289 24 H 0.049 0.951 25 H 0.108 0.892 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.240 0.760 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.352 5.612 -11.401 15.206 hybrid contribution 1.172 -0.605 1.411 1.931 sum 9.524 5.007 -9.990 14.682 Atomic orbital electron populations 1.22213 0.98087 0.99852 1.01513 1.18507 0.91704 0.91877 0.80983 0.94323 1.21297 1.32192 1.13305 0.90119 0.91829 1.24936 0.94837 0.95007 0.99084 1.69878 1.35857 1.22549 1.24046 0.86533 0.79073 0.79758 0.81871 1.20249 1.21183 1.20144 1.55663 1.80943 1.18422 1.31486 1.04718 0.76372 0.74796 0.73703 1.93582 1.44944 1.70908 1.84025 1.93517 1.85001 1.58051 1.61098 1.30713 1.22862 1.14272 1.08017 1.21633 0.88944 0.90351 0.94855 0.91361 1.22162 0.97119 0.99508 0.99362 1.21626 0.98154 0.97998 0.98428 1.22218 0.95951 0.98811 1.02593 1.22634 0.97841 0.92937 0.88456 1.88116 1.40185 1.50080 1.50551 0.95055 0.89199 0.95317 0.92487 0.75968 0.83951 0.83652 0.90287 0.90461 0.91253 0.91720 0.90737 0.90847 0.88270 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 9.29 37.16 0.35 -3.55 16 2 C 0.27 6.61 2.66 -69.08 -0.18 6.43 16 3 H 0.04 0.97 7.15 -51.93 -0.37 0.60 16 4 C -0.53 -13.60 8.76 -34.44 -0.30 -13.90 16 5 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.14 11.32 55.43 0.63 -23.51 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 12 N -1.11 -22.64 5.35 -5.88 -0.03 -22.67 16 13 S 2.61 49.85 5.24 -107.50 -0.56 49.28 16 14 O -0.94 -21.16 16.64 -59.87 -1.00 -22.15 16 15 O -0.99 -19.91 18.08 -57.54 -1.04 -20.95 16 16 C -0.63 -9.81 5.65 37.16 0.21 -9.60 16 17 C 0.10 1.43 2.64 -26.68 -0.07 1.36 16 18 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.14 -1.62 5.42 -26.59 -0.14 -1.77 16 20 C -0.12 -1.16 6.03 -26.55 -0.16 -1.32 16 21 C -0.16 -1.50 6.14 -26.59 -0.16 -1.66 16 22 C 0.06 0.67 6.84 37.21 0.25 0.93 16 23 O -0.37 -5.82 9.74 -36.13 -0.35 -6.17 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.68 7.42 -51.93 -0.39 0.30 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.41 7.71 8.79 -34.48 -0.30 7.41 16 29 H 0.14 1.84 8.14 -51.92 -0.42 1.42 16 30 H 0.15 2.36 7.44 -51.93 -0.39 1.97 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.74 8.14 -51.94 -0.42 0.32 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -31.83 318.51 -8.84 -40.67 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.96 Total: 6.98 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -0.31 Total: -21.49 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.60 Total: -46.19 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -2.39 Total: -49.27 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 49.85 SS G_CDS: -0.56 Total: 49.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.83 -8.84 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171092867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.379 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds