Wall clock time and date at job start Mon Mar 30 2020 01:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47395 * 2 1 4 4 C 1.50699 * 109.46954 * 120.00043 * 2 1 3 5 5 H 1.08010 * 119.99818 * 119.99948 * 4 2 1 6 6 C 1.37880 * 120.00374 * 299.99549 * 4 2 1 7 7 N 1.31513 * 119.99690 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00305 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46930 * 60.00070 * 8 6 4 10 10 H 1.48493 * 109.46892 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46993 * 300.00092 * 8 6 4 12 12 N 1.46499 * 109.47175 * 239.99660 * 2 1 3 13 13 S 1.65605 * 119.99510 * 94.99873 * 12 2 1 14 14 O 1.42092 * 104.27847 * 308.93014 * 13 12 2 15 15 O 1.42105 * 104.27601 * 181.07475 * 13 12 2 16 16 C 1.81401 * 104.44827 * 65.00461 * 13 12 2 17 17 C 1.53002 * 109.46758 * 179.97438 * 16 13 12 18 18 H 1.08993 * 109.49165 * 305.02502 * 17 16 13 19 19 C 1.53096 * 109.47810 * 184.99713 * 17 16 13 20 20 C 1.53173 * 109.16177 * 182.40899 * 19 17 16 21 21 C 1.53181 * 109.03676 * 56.98730 * 20 19 17 22 22 C 1.53100 * 109.15732 * 303.01504 * 21 20 19 23 23 O 1.42899 * 109.41499 * 57.61360 * 22 21 20 24 24 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46983 * 299.99967 * 1 2 3 26 26 H 1.08991 * 109.47077 * 59.99959 * 1 2 3 27 27 H 0.96996 * 120.00117 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00297 * 275.00438 * 12 2 1 29 29 H 1.08999 * 109.47113 * 59.99936 * 16 13 12 30 30 H 1.08998 * 109.46854 * 299.99504 * 16 13 12 31 31 H 1.08998 * 109.52422 * 302.31997 * 19 17 16 32 32 H 1.09003 * 109.51754 * 62.44233 * 19 17 16 33 33 H 1.08999 * 109.54116 * 176.84420 * 20 19 17 34 34 H 1.08997 * 109.54950 * 297.02648 * 20 19 17 35 35 H 1.08988 * 109.52544 * 62.91818 * 21 20 19 36 36 H 1.08996 * 109.52230 * 183.04989 * 21 20 19 37 37 H 1.08996 * 109.47674 * 177.59246 * 22 21 20 38 38 H 1.09003 * 109.48101 * 297.61458 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9429 0.8297 2.6035 8 14 2.3226 -1.1196 4.0080 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4199 5.2204 11 1 1.8280 -2.5198 4.0082 12 7 2.0184 -0.6907 -1.1961 13 16 2.4122 0.1772 -2.5505 14 8 1.2752 0.9966 -2.7845 15 8 2.8122 -0.8076 -3.4937 16 6 3.8314 1.1872 -2.0440 17 6 4.2941 2.0443 -3.2239 18 1 4.5006 1.4029 -4.0806 19 6 5.5660 2.8030 -2.8359 20 6 5.9889 3.7041 -4.0001 21 6 4.8329 4.6470 -4.3476 22 6 3.5893 3.8171 -4.6772 23 8 3.2686 2.9794 -3.5648 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7089 1.1613 3.4844 28 1 2.1110 -1.6562 -1.1948 29 1 4.6459 0.5361 -1.7268 30 1 3.5400 1.8342 -1.2167 31 1 5.3712 3.4140 -1.9545 32 1 6.3621 2.0913 -2.6170 33 1 6.8618 4.2889 -3.7101 34 1 6.2332 3.0897 -4.8667 35 1 4.6232 5.2952 -3.4968 36 1 5.1054 5.2550 -5.2102 37 1 2.7518 4.4835 -4.8837 38 1 3.7864 3.1990 -5.5531 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171092867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:01 Heat of formation + Delta-G solvation = -159.485462 kcal Electronic energy + Delta-G solvation = -20716.477649 eV Core-core repulsion = 17491.554356 eV Total energy + Delta-G solvation = -3224.923293 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47010 -38.09934 -37.24320 -36.84859 -34.64212 -34.09075 -34.00881 -30.09797 -29.13575 -27.21725 -25.31827 -23.64154 -22.82467 -21.29648 -20.22595 -19.11846 -17.96134 -17.65184 -17.41065 -17.04733 -16.86888 -16.33239 -15.56994 -15.45537 -15.32753 -14.53137 -14.45063 -14.04250 -13.89925 -13.61497 -13.47412 -13.44115 -13.17758 -13.01596 -12.91423 -12.78383 -12.38835 -12.35221 -12.20649 -12.06257 -11.97909 -11.93888 -11.61028 -11.28557 -11.06369 -10.57227 -10.46850 -10.01223 -8.11754 -6.27500 -0.58420 1.48336 1.49883 1.57195 1.97049 2.45880 2.56461 2.87806 3.17459 3.37264 3.53760 3.78950 3.87211 3.95871 4.04056 4.16394 4.25198 4.44928 4.52686 4.65650 4.70587 4.84134 4.89250 4.92741 5.04755 5.11687 5.13647 5.17667 5.17825 5.37976 5.60324 5.74394 6.03103 6.10636 6.14882 6.44729 6.84797 7.42976 8.93331 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022731 B = 0.005265 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.514149 B = 5316.573408 C = 5784.340094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.277 3.723 3 H 0.026 0.974 4 C -0.541 4.541 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.273 1.273 12 N -1.107 6.107 13 S 2.617 3.383 14 O -0.986 6.986 15 O -0.998 6.998 16 C -0.612 4.612 17 C 0.091 3.909 18 H 0.080 0.920 19 C -0.142 4.142 20 C -0.123 4.123 21 C -0.154 4.154 22 C 0.044 3.956 23 O -0.407 6.407 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.025 0.975 27 H 0.265 0.735 28 H 0.413 0.587 29 H 0.173 0.827 30 H 0.138 0.862 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.375 5.185 -11.054 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.171 3.829 3 H 0.044 0.956 4 C -0.580 4.580 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.866 5.866 13 S 2.713 3.287 14 O -0.976 6.976 15 O -0.989 6.989 16 C -0.743 4.743 17 C 0.031 3.969 18 H 0.098 0.902 19 C -0.180 4.180 20 C -0.161 4.161 21 C -0.192 4.192 22 C -0.032 4.032 23 O -0.327 6.327 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.247 0.753 29 H 0.191 0.809 30 H 0.157 0.843 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.624 5.458 -11.656 16.689 hybrid contribution 0.465 -0.527 1.401 1.568 sum 11.089 4.931 -10.255 15.888 Atomic orbital electron populations 1.22143 0.99020 0.99642 1.00397 1.18256 0.91040 0.91539 0.82031 0.95619 1.21610 1.32156 1.13547 0.90723 0.91027 1.25723 0.94990 0.95627 1.01977 1.70006 1.36928 1.23878 1.24620 0.85523 0.78870 0.78516 0.78164 1.19242 1.21299 1.19781 1.55474 1.81686 1.18931 1.30488 1.04433 0.76806 0.74439 0.73065 1.93529 1.48079 1.71432 1.84529 1.93495 1.85230 1.58820 1.61310 1.30533 1.21191 1.13945 1.08638 1.21872 0.89864 0.90677 0.94441 0.90209 1.22183 0.96016 0.99919 0.99928 1.21669 0.98505 0.97906 0.98016 1.22200 0.95013 0.98648 1.03312 1.22937 0.99300 0.93134 0.87817 1.88069 1.41538 1.50965 1.52108 0.94735 0.91128 0.95553 0.92541 0.75260 0.80893 0.84334 0.91207 0.88597 0.89415 0.90511 0.91609 0.88341 0.87857 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.71 9.29 71.98 0.67 -7.04 16 2 C 0.28 13.49 2.66 44.25 0.12 13.61 16 3 H 0.03 1.33 7.15 -2.39 -0.02 1.31 16 4 C -0.54 -27.52 8.76 25.60 0.22 -27.30 16 5 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -50.32 11.32 21.45 0.24 -50.08 16 8 Si 0.96 40.89 29.54 68.60 2.03 42.92 16 9 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 10 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 N -1.11 -45.27 5.35 -172.52 -0.92 -46.19 16 13 S 2.62 99.59 5.24 -56.49 -0.30 99.29 16 14 O -0.99 -45.18 16.64 -125.42 -2.09 -47.26 16 15 O -1.00 -39.65 18.08 -127.65 -2.31 -41.96 16 16 C -0.61 -18.28 5.65 71.98 0.41 -17.87 16 17 C 0.09 2.42 2.64 30.63 0.08 2.50 16 18 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 19 C -0.14 -2.86 5.42 30.68 0.17 -2.69 16 20 C -0.12 -1.92 6.03 30.71 0.19 -1.73 16 21 C -0.15 -2.57 6.14 30.69 0.19 -2.38 16 22 C 0.04 0.96 6.84 72.02 0.49 1.46 16 23 O -0.41 -12.59 9.74 -148.12 -1.44 -14.03 16 24 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 26 H 0.03 1.29 7.42 -2.39 -0.02 1.27 16 27 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 28 H 0.41 15.50 8.79 -96.74 -0.85 14.65 16 29 H 0.17 4.03 8.14 -2.39 -0.02 4.01 16 30 H 0.14 4.45 7.44 -2.39 -0.02 4.43 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -67.80 318.51 -1.61 -69.41 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.20 Total: 28.02 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 2.98 Total: -40.12 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -0.68 Total: -96.27 kcal Atomic # 8 Polarization: -97.42 SS G_CDS: -5.84 Total: -103.26 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: 99.59 SS G_CDS: -0.30 Total: 99.29 kcal Total: -67.80 -1.61 -69.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171092867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.074 kcal (2) G-P(sol) polarization free energy of solvation -67.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds