Wall clock time and date at job start Mon Mar 30 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47481 * 2 1 4 4 C 1.50702 * 109.47160 * 120.00586 * 2 1 3 5 5 H 1.07996 * 120.00562 * 119.99599 * 4 2 1 6 6 C 1.37874 * 119.99846 * 299.99320 * 4 2 1 7 7 N 1.31522 * 120.00047 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00144 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47341 * 60.00338 * 8 6 4 10 10 H 1.48507 * 109.47413 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47159 * 299.99944 * 8 6 4 12 12 N 1.46508 * 109.46831 * 240.00025 * 2 1 3 13 13 S 1.65597 * 119.99715 * 95.00359 * 12 2 1 14 14 O 1.42100 * 104.27790 * 308.92733 * 13 12 2 15 15 O 1.42106 * 104.27519 * 181.07202 * 13 12 2 16 16 C 1.81402 * 104.45244 * 64.99939 * 13 12 2 17 17 C 1.52994 * 109.47072 * 179.97438 * 16 13 12 18 18 H 1.08999 * 109.48336 * 59.97739 * 17 16 13 19 19 C 1.53098 * 109.47761 * 180.02562 * 17 16 13 20 20 C 1.53177 * 109.21356 * 177.56950 * 19 17 16 21 21 C 1.53180 * 109.03525 * 303.11207 * 20 19 17 22 22 C 1.53097 * 109.21119 * 56.88485 * 21 20 19 23 23 O 1.42898 * 109.41405 * 302.42599 * 22 21 20 24 24 H 1.08993 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46540 * 300.00185 * 1 2 3 26 26 H 1.09000 * 109.46622 * 59.99597 * 1 2 3 27 27 H 0.96999 * 120.00153 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99928 * 274.99937 * 12 2 1 29 29 H 1.09005 * 109.46816 * 59.99318 * 16 13 12 30 30 H 1.08998 * 109.46862 * 300.00329 * 16 13 12 31 31 H 1.09002 * 109.52244 * 297.50889 * 19 17 16 32 32 H 1.09004 * 109.52508 * 57.63418 * 19 17 16 33 33 H 1.09005 * 109.54330 * 62.92184 * 20 19 17 34 34 H 1.09005 * 109.54560 * 183.18386 * 20 19 17 35 35 H 1.08992 * 109.47198 * 296.98281 * 21 20 19 36 36 H 1.09005 * 109.58122 * 176.85328 * 21 20 19 37 37 H 1.09007 * 109.47760 * 182.43925 * 22 21 20 38 38 H 1.08997 * 109.48022 * 62.41203 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8076 -1.1192 4.0076 10 1 1.8271 -0.4201 5.2204 11 1 1.8280 -2.5200 4.0080 12 7 2.0183 -0.6907 -1.1963 13 16 2.4122 0.1772 -2.5505 14 8 1.2751 0.9967 -2.7846 15 8 2.8121 -0.8076 -3.4937 16 6 3.8314 1.1872 -2.0441 17 6 4.2942 2.0443 -3.2239 18 1 3.4798 2.6952 -3.5419 19 6 5.4924 2.8963 -2.7968 20 6 5.9886 3.7064 -3.9984 21 6 6.3344 2.7457 -5.1402 22 6 5.1037 1.8994 -5.4767 23 8 4.6770 1.1961 -4.3083 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 0.7090 1.1612 3.4844 28 1 2.1109 -1.6562 -1.1950 29 1 4.6459 0.5360 -1.7268 30 1 3.5401 1.8341 -1.2166 31 1 5.1907 3.5753 -1.9993 32 1 6.2921 2.2474 -2.4397 33 1 5.2063 4.3920 -4.3242 34 1 6.8763 4.2722 -3.7153 35 1 7.1514 2.0936 -4.8316 36 1 6.6356 3.3160 -6.0190 37 1 5.3573 1.1843 -6.2593 38 1 4.3001 2.5487 -5.8240 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171092876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:05 Heat of formation + Delta-G solvation = -159.227246 kcal Electronic energy + Delta-G solvation = -20663.251655 eV Core-core repulsion = 17438.339559 eV Total energy + Delta-G solvation = -3224.912096 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48224 -38.08395 -37.22548 -36.86323 -34.64940 -34.08753 -34.00997 -30.09009 -29.13509 -27.21621 -25.32387 -23.64931 -22.81715 -21.28369 -20.23878 -19.09341 -17.97196 -17.70792 -17.37120 -17.02762 -16.86026 -16.30814 -15.61974 -15.46746 -15.31841 -14.52828 -14.45870 -14.02712 -13.89411 -13.61843 -13.53230 -13.41987 -13.14652 -13.02831 -12.89995 -12.78206 -12.38871 -12.35199 -12.20794 -12.06984 -11.98128 -11.94203 -11.61470 -11.30344 -11.05623 -10.57707 -10.48028 -10.01137 -8.12222 -6.27280 -0.57563 1.48385 1.49888 1.56935 1.97348 2.46067 2.54872 2.87157 3.17062 3.36915 3.53491 3.78973 3.87443 3.96353 4.05204 4.15439 4.25714 4.45929 4.53015 4.64992 4.68335 4.84347 4.89345 4.93231 5.04742 5.11506 5.12711 5.17216 5.17602 5.37205 5.60625 5.74780 6.02773 6.10161 6.11734 6.44130 6.84400 7.43038 8.92727 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024922 B = 0.005078 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.238973 B = 5512.914025 C = 6056.581447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.275 3.725 3 H 0.031 0.969 4 C -0.542 4.542 5 H 0.069 0.931 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.274 1.274 12 N -1.108 6.108 13 S 2.619 3.381 14 O -0.998 6.998 15 O -0.985 6.985 16 C -0.611 4.611 17 C 0.091 3.909 18 H 0.074 0.926 19 C -0.141 4.141 20 C -0.125 4.125 21 C -0.152 4.152 22 C 0.044 3.956 23 O -0.404 6.404 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.027 0.973 27 H 0.266 0.734 28 H 0.413 0.587 29 H 0.154 0.846 30 H 0.157 0.843 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 5.680 -10.892 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.169 3.831 3 H 0.048 0.952 4 C -0.581 4.581 5 H 0.087 0.913 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.867 5.867 13 S 2.714 3.286 14 O -0.989 6.989 15 O -0.976 6.976 16 C -0.742 4.742 17 C 0.032 3.968 18 H 0.092 0.908 19 C -0.180 4.180 20 C -0.162 4.162 21 C -0.190 4.190 22 C -0.032 4.032 23 O -0.324 6.324 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.247 0.753 29 H 0.172 0.828 30 H 0.175 0.825 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.436 5.739 -11.582 16.613 hybrid contribution 0.379 -0.428 1.458 1.566 sum 10.815 5.311 -10.124 15.738 Atomic orbital electron populations 1.22152 0.98936 0.99683 1.00500 1.18302 0.91103 0.91696 0.81985 0.95176 1.21594 1.32132 1.13543 0.90811 0.91307 1.25673 0.94973 0.95634 1.01807 1.69989 1.36848 1.23777 1.24637 0.85557 0.78833 0.78539 0.78345 1.19388 1.21145 1.19940 1.55510 1.81732 1.18966 1.30500 1.04375 0.76345 0.74867 0.72996 1.93518 1.48430 1.71922 1.84997 1.93505 1.84813 1.58346 1.60916 1.30492 1.20538 1.15319 1.07840 1.21830 0.98615 0.91039 0.85345 0.90795 1.22169 0.96981 0.99093 0.99750 1.21678 1.02455 0.97692 0.94404 1.22190 0.97977 0.98692 1.00121 1.22955 0.96590 0.96942 0.86716 1.88024 1.86120 1.34413 1.23836 0.94860 0.90943 0.95424 0.92489 0.75317 0.82773 0.82503 0.89378 0.90488 0.91008 0.89363 0.91103 0.88410 0.87373 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.59 9.29 71.98 0.67 -6.92 16 2 C 0.27 13.16 2.66 44.24 0.12 13.28 16 3 H 0.03 1.48 7.15 -2.39 -0.02 1.47 16 4 C -0.54 -27.39 8.76 25.60 0.22 -27.17 16 5 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 6 C 0.02 1.01 5.30 84.65 0.45 1.45 16 7 N -0.91 -49.22 11.32 21.45 0.24 -48.98 16 8 Si 0.96 40.69 29.54 68.60 2.03 42.72 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 N -1.11 -45.47 5.35 -172.50 -0.92 -46.39 16 13 S 2.62 100.17 5.18 -56.49 -0.29 99.88 16 14 O -1.00 -44.19 17.11 -127.65 -2.18 -46.37 16 15 O -0.99 -41.22 17.41 -123.50 -2.15 -43.37 16 16 C -0.61 -18.28 5.69 71.98 0.41 -17.88 16 17 C 0.09 2.44 2.70 30.63 0.08 2.52 16 18 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 19 C -0.14 -2.88 5.42 30.69 0.17 -2.71 16 20 C -0.12 -1.96 6.03 30.71 0.19 -1.77 16 21 C -0.15 -2.35 6.13 30.69 0.19 -2.16 16 22 C 0.04 0.90 6.84 72.01 0.49 1.39 16 23 O -0.40 -11.71 9.45 -142.57 -1.35 -13.06 16 24 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 26 H 0.03 1.31 7.42 -2.39 -0.02 1.29 16 27 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 28 H 0.41 15.82 8.79 -96.75 -0.85 14.96 16 29 H 0.15 4.17 8.14 -2.39 -0.02 4.16 16 30 H 0.16 4.44 7.44 -2.39 -0.02 4.42 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -66.18 318.06 -1.45 -67.63 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.20 Total: 27.91 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 2.98 Total: -39.97 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -0.68 Total: -95.37 kcal Atomic # 8 Polarization: -97.12 SS G_CDS: -5.68 Total: -102.80 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 100.17 SS G_CDS: -0.29 Total: 99.88 kcal Total: -66.18 -1.45 -67.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171092876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.598 kcal (2) G-P(sol) polarization free energy of solvation -66.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds