Wall clock time and date at job start Mon Mar 30 2020 01:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 108.45163 * 2 1 4 4 C 1.47477 * 108.55442 * 117.97342 * 2 1 3 5 5 N 1.50111 * 106.48809 * 178.01041 * 4 2 1 6 6 S 1.65599 * 120.63710 * 111.37256 * 5 4 2 7 7 O 1.42105 * 104.27797 * 25.79310 * 6 5 4 8 8 O 1.42101 * 104.27901 * 153.65018 * 6 5 4 9 9 C 1.81397 * 104.44825 * 269.72198 * 6 5 4 10 10 C 1.53009 * 109.47235 * 179.97438 * 9 6 5 11 11 C 1.50697 * 109.46948 * 179.97438 * 10 9 6 12 12 H 1.07997 * 120.00322 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99943 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99809 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00266 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47023 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47077 * 120.00165 * 15 13 11 18 18 H 1.48500 * 109.47130 * 240.00059 * 15 13 11 19 19 C 1.43427 * 118.72802 * 291.09719 * 5 4 2 20 20 C 1.55330 * 116.23900 * 89.62817 * 19 5 4 21 21 C 1.55188 * 108.87039 * 319.46203 * 20 19 5 22 22 O 1.39637 * 110.56942 * 322.14338 * 21 20 19 23 23 H 1.09002 * 109.46747 * 177.88017 * 1 2 3 24 24 H 1.09002 * 109.46842 * 297.87337 * 1 2 3 25 25 H 1.08996 * 109.47395 * 57.87679 * 1 2 3 26 26 H 1.09002 * 110.11317 * 58.79402 * 4 2 1 27 27 H 1.09005 * 110.15047 * 297.24508 * 4 2 1 28 28 H 1.09004 * 109.47032 * 299.99803 * 9 6 5 29 29 H 1.09000 * 109.47124 * 60.00075 * 9 6 5 30 30 H 1.08995 * 109.47216 * 300.00010 * 10 9 6 31 31 H 1.09000 * 109.46805 * 60.00123 * 10 9 6 32 32 H 0.97001 * 119.99986 * 179.97438 * 14 13 11 33 33 H 1.08998 * 108.12714 * 211.38489 * 19 5 4 34 34 H 1.09002 * 108.12347 * 327.86658 * 19 5 4 35 35 H 1.09000 * 109.57018 * 79.28167 * 20 19 5 36 36 H 1.08995 * 109.57018 * 199.64816 * 20 19 5 37 37 H 1.09003 * 109.25577 * 82.42802 * 21 20 19 38 38 H 1.09005 * 109.25689 * 201.89846 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8750 1.0340 0.0000 4 6 1.9993 -0.6558 1.2348 5 7 3.4986 -0.6747 1.1638 6 16 4.4040 0.2538 2.1936 7 8 3.5707 0.4297 3.3312 8 8 5.6418 -0.4371 2.2919 9 6 4.6204 1.8255 1.3141 10 6 5.4508 2.7809 2.1736 11 6 5.6311 4.0863 1.4426 12 1 5.1965 4.2213 0.4632 13 6 6.3499 5.1088 2.0247 14 7 6.8787 4.9446 3.2177 15 14 6.5728 6.7272 1.1190 16 1 5.8860 6.6574 -0.1957 17 1 5.9896 7.8298 1.9248 18 1 8.0207 6.9809 0.9076 19 6 4.1322 -1.5169 0.1909 20 6 4.3968 -0.8797 -1.2008 21 6 3.1706 -0.0157 -1.5986 22 8 1.9846 -0.6309 -1.1927 23 1 -0.3633 -1.0270 -0.0380 24 1 -0.3633 0.4805 0.9085 25 1 -0.3634 0.5464 -0.8703 26 1 1.6158 -1.6748 1.2870 27 1 1.6747 -0.0892 2.1076 28 1 5.1345 1.6457 0.3698 29 1 3.6444 2.2693 1.1176 30 1 4.9364 2.9606 3.1176 31 1 6.4268 2.3373 2.3704 32 1 7.3848 5.6638 3.6270 33 1 5.0869 -1.8480 0.5993 34 1 3.5072 -2.3983 0.0471 35 1 5.2859 -0.2511 -1.1514 36 1 4.5445 -1.6665 -1.9404 37 1 3.2499 0.9617 -1.1226 38 1 3.1567 0.1118 -2.6811 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171766318.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:50 Heat of formation + Delta-G solvation = -119.395750 kcal Electronic energy + Delta-G solvation = -21105.215675 eV Core-core repulsion = 17882.030802 eV Total energy + Delta-G solvation = -3223.184873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.98144 -36.74868 -35.71357 -35.34852 -33.94641 -33.79913 -31.21668 -29.99712 -26.96694 -25.72906 -25.01527 -22.03903 -21.60012 -21.01279 -18.53851 -17.74450 -16.96605 -16.54561 -16.31830 -15.52449 -15.31119 -15.20816 -14.61210 -14.53985 -13.67683 -13.42946 -13.37562 -12.98406 -12.60112 -12.47637 -12.25276 -12.13761 -11.91785 -11.79965 -11.63323 -11.46696 -11.16379 -11.13134 -10.95724 -10.82575 -10.57668 -10.42817 -10.40172 -9.82562 -9.67826 -9.32193 -8.82379 -8.54056 -6.15867 -4.21626 0.70338 2.92159 3.22593 3.30038 3.33040 3.77587 4.23835 4.34987 4.45780 4.66893 4.72579 4.88626 4.98331 4.99779 5.14539 5.17266 5.19420 5.39423 5.46786 5.53423 5.58489 5.63562 5.73295 5.76022 5.85208 5.87807 5.94978 6.02622 6.18056 6.43432 6.70058 7.09973 7.25867 7.31817 7.76997 8.13585 8.81893 9.43404 10.95211 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.005690 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.732282 B = 4919.640855 C = 5335.963684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.055 3.945 3 H 0.068 0.932 4 C 0.099 3.901 5 N -1.003 6.003 6 S 2.587 3.413 7 O -0.964 6.964 8 O -0.962 6.962 9 C -0.591 4.591 10 C 0.029 3.971 11 C -0.519 4.519 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.118 3.882 20 C -0.172 4.172 21 C 0.049 3.951 22 O -0.348 6.348 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.460 -11.144 -8.691 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.004 4.004 3 H 0.086 0.914 4 C -0.025 4.025 5 N -0.838 5.838 6 S 2.686 3.314 7 O -0.954 6.954 8 O -0.952 6.952 9 C -0.724 4.724 10 C -0.010 4.010 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.010 4.010 20 C -0.212 4.212 21 C -0.028 4.028 22 O -0.266 6.266 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.128 0.872 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.154 -11.570 -7.774 17.245 hybrid contribution 0.274 1.484 -0.986 1.803 sum -9.880 -10.085 -8.760 16.616 Atomic orbital electron populations 1.21956 0.93441 1.03076 1.02874 1.21694 0.95677 0.96500 0.86529 0.91374 1.21755 0.78550 1.03554 0.98683 1.57883 1.15219 1.59618 1.51032 1.05796 0.73569 0.77018 0.75037 1.93526 1.67707 1.86971 1.47194 1.93527 1.44157 1.71615 1.85898 1.30559 1.10056 1.18336 1.13437 1.18963 0.94217 0.93558 0.94287 1.21020 1.34208 0.97281 1.03389 0.92036 1.25071 0.95326 0.99075 0.95001 1.69965 1.34696 1.33284 1.14854 0.86422 0.78027 0.83158 0.79731 1.19666 1.20762 1.20759 1.20749 0.99041 0.93166 0.88007 1.23500 0.98765 1.01166 0.97794 1.22631 0.84781 0.95596 0.99831 1.87664 1.39168 1.59648 1.40123 0.91657 0.90882 0.91710 0.89632 0.87161 0.86293 0.86515 0.94857 0.94848 0.92544 0.89768 0.90669 0.90623 0.89993 0.92122 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.42 37.16 0.35 -0.98 16 2 C 0.06 0.59 2.63 -29.39 -0.08 0.52 16 3 H 0.07 0.75 6.77 -51.93 -0.35 0.39 16 4 C 0.10 1.15 5.54 -4.69 -0.03 1.12 16 5 N -1.00 -13.94 2.82 -115.29 -0.33 -14.27 16 6 S 2.59 47.02 5.46 -107.50 -0.59 46.43 16 7 O -0.96 -19.76 16.64 -57.54 -0.96 -20.71 16 8 O -0.96 -20.08 16.56 -57.54 -0.95 -21.03 16 9 C -0.59 -11.16 6.12 37.16 0.23 -10.94 16 10 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 11 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 15 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.12 1.46 5.29 -4.43 -0.02 1.44 16 20 C -0.17 -1.87 6.75 -24.34 -0.16 -2.04 16 21 C 0.05 0.54 6.38 38.32 0.24 0.78 16 22 O -0.35 -4.03 9.83 -31.93 -0.31 -4.34 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.11 1.29 6.95 -51.93 -0.36 0.93 16 28 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 29 H 0.12 1.96 8.14 -51.92 -0.42 1.53 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.08 1.12 6.82 -51.93 -0.35 0.77 16 34 H 0.07 0.84 7.98 -51.93 -0.41 0.42 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.69 6.66 -51.93 -0.35 0.34 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -33.57 317.91 -8.67 -42.24 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.02 Total: -1.06 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -0.02 Total: -22.46 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.41 Total: -39.82 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -2.22 Total: -46.09 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 47.02 SS G_CDS: -0.59 Total: 46.43 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.57 -8.67 -42.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171766318.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.159 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds