Wall clock time and date at job start Mon Mar 30 2020 01:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 108.45163 * 2 1 4 4 C 1.47477 * 108.55442 * 117.97342 * 2 1 3 5 5 N 1.50111 * 106.48809 * 178.01041 * 4 2 1 6 6 S 1.65599 * 120.63710 * 111.37256 * 5 4 2 7 7 O 1.42105 * 104.27797 * 25.79310 * 6 5 4 8 8 O 1.42101 * 104.27901 * 153.65018 * 6 5 4 9 9 C 1.81397 * 104.44825 * 269.72198 * 6 5 4 10 10 C 1.53009 * 109.47235 * 179.97438 * 9 6 5 11 11 C 1.50697 * 109.46948 * 179.97438 * 10 9 6 12 12 H 1.07997 * 120.00322 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99943 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99809 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00266 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47023 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47077 * 120.00165 * 15 13 11 18 18 H 1.48500 * 109.47130 * 240.00059 * 15 13 11 19 19 C 1.43427 * 118.72802 * 291.09719 * 5 4 2 20 20 C 1.55330 * 116.23900 * 89.62817 * 19 5 4 21 21 C 1.55188 * 108.87039 * 319.46203 * 20 19 5 22 22 O 1.39637 * 110.56942 * 322.14338 * 21 20 19 23 23 H 1.09002 * 109.46747 * 177.88017 * 1 2 3 24 24 H 1.09002 * 109.46842 * 297.87337 * 1 2 3 25 25 H 1.08996 * 109.47395 * 57.87679 * 1 2 3 26 26 H 1.09002 * 110.11317 * 58.79402 * 4 2 1 27 27 H 1.09005 * 110.15047 * 297.24508 * 4 2 1 28 28 H 1.09004 * 109.47032 * 299.99803 * 9 6 5 29 29 H 1.09000 * 109.47124 * 60.00075 * 9 6 5 30 30 H 1.08995 * 109.47216 * 300.00010 * 10 9 6 31 31 H 1.09000 * 109.46805 * 60.00123 * 10 9 6 32 32 H 0.97001 * 119.99986 * 179.97438 * 14 13 11 33 33 H 1.08998 * 108.12714 * 211.38489 * 19 5 4 34 34 H 1.09002 * 108.12347 * 327.86658 * 19 5 4 35 35 H 1.09000 * 109.57018 * 79.28167 * 20 19 5 36 36 H 1.08995 * 109.57018 * 199.64816 * 20 19 5 37 37 H 1.09003 * 109.25577 * 82.42802 * 21 20 19 38 38 H 1.09005 * 109.25689 * 201.89846 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8750 1.0340 0.0000 4 6 1.9993 -0.6558 1.2348 5 7 3.4986 -0.6747 1.1638 6 16 4.4040 0.2538 2.1936 7 8 3.5707 0.4297 3.3312 8 8 5.6418 -0.4371 2.2919 9 6 4.6204 1.8255 1.3141 10 6 5.4508 2.7809 2.1736 11 6 5.6311 4.0863 1.4426 12 1 5.1965 4.2213 0.4632 13 6 6.3499 5.1088 2.0247 14 7 6.8787 4.9446 3.2177 15 14 6.5728 6.7272 1.1190 16 1 5.8860 6.6574 -0.1957 17 1 5.9896 7.8298 1.9248 18 1 8.0207 6.9809 0.9076 19 6 4.1322 -1.5169 0.1909 20 6 4.3968 -0.8797 -1.2008 21 6 3.1706 -0.0157 -1.5986 22 8 1.9846 -0.6309 -1.1927 23 1 -0.3633 -1.0270 -0.0380 24 1 -0.3633 0.4805 0.9085 25 1 -0.3634 0.5464 -0.8703 26 1 1.6158 -1.6748 1.2870 27 1 1.6747 -0.0892 2.1076 28 1 5.1345 1.6457 0.3698 29 1 3.6444 2.2693 1.1176 30 1 4.9364 2.9606 3.1176 31 1 6.4268 2.3373 2.3704 32 1 7.3848 5.6638 3.6270 33 1 5.0869 -1.8480 0.5993 34 1 3.5072 -2.3983 0.0471 35 1 5.2859 -0.2511 -1.1514 36 1 4.5445 -1.6665 -1.9404 37 1 3.2499 0.9617 -1.1226 38 1 3.1567 0.1118 -2.6811 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171766318.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:49 Heat of formation + Delta-G solvation = -143.715962 kcal Electronic energy + Delta-G solvation = -21106.270279 eV Core-core repulsion = 17882.030802 eV Total energy + Delta-G solvation = -3224.239477 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86173 -38.31045 -37.12479 -36.54707 -35.91827 -34.65386 -33.16281 -30.87311 -27.87561 -27.62806 -26.01490 -23.68132 -22.48629 -22.21271 -19.88002 -19.18938 -18.46066 -17.86466 -17.51104 -16.87510 -16.56451 -16.42823 -16.33579 -15.64516 -15.20678 -14.56097 -14.46510 -14.26437 -13.86647 -13.76796 -13.46883 -13.31312 -13.25794 -13.09224 -12.98015 -12.89112 -12.81384 -12.69764 -12.30119 -12.13148 -12.06453 -11.74899 -11.63966 -11.47412 -11.13807 -10.66971 -10.54303 -9.98801 -8.27404 -6.41476 -0.77173 1.40386 1.40752 1.53919 1.63809 2.36807 2.78260 2.96210 3.06191 3.09836 3.57482 3.83724 3.98672 4.03332 4.08139 4.12237 4.18501 4.30780 4.31481 4.57296 4.70242 4.74753 4.78334 4.85622 4.93718 5.00604 5.06316 5.11083 5.19538 5.24325 5.25322 5.36435 5.66141 5.67105 6.04199 6.26813 6.72272 7.28961 8.85187 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.005690 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.732282 B = 4919.640855 C = 5335.963684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 H 0.065 0.935 4 C 0.094 3.906 5 N -0.993 5.993 6 S 2.607 3.393 7 O -0.990 6.990 8 O -0.993 6.993 9 C -0.586 4.586 10 C 0.022 3.978 11 C -0.536 4.536 12 H 0.076 0.924 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.973 3.027 16 H -0.255 1.255 17 H -0.278 1.278 18 H -0.279 1.279 19 C 0.110 3.890 20 C -0.171 4.171 21 C 0.045 3.955 22 O -0.353 6.353 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.007 0.993 31 H 0.005 0.995 32 H 0.267 0.733 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.873 -11.211 -10.922 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 H 0.083 0.917 4 C -0.029 4.029 5 N -0.830 5.830 6 S 2.705 3.295 7 O -0.980 6.980 8 O -0.983 6.983 9 C -0.719 4.719 10 C -0.016 4.016 11 C -0.575 4.575 12 H 0.094 0.906 13 C -0.202 4.202 14 N -0.574 5.574 15 Si 0.797 3.203 16 H -0.179 1.179 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.016 4.016 20 C -0.211 4.211 21 C -0.033 4.033 22 O -0.271 6.271 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.574 -11.635 -10.016 19.226 hybrid contribution 0.669 1.401 -0.301 1.581 sum -10.905 -10.234 -10.317 18.168 Atomic orbital electron populations 1.21946 0.91627 1.03800 1.03598 1.21754 0.97111 0.96088 0.85868 0.91666 1.22048 0.76557 1.05013 0.99324 1.57541 1.16136 1.58489 1.50831 1.04913 0.72971 0.76669 0.74961 1.93484 1.68172 1.87362 1.49013 1.93481 1.46161 1.72127 1.86547 1.30442 1.10335 1.17925 1.13154 1.18810 0.93657 0.94769 0.94409 1.21516 1.33890 0.98046 1.04024 0.90560 1.26112 0.94971 1.03318 0.95790 1.70109 1.35810 1.34729 1.16797 0.85275 0.78089 0.78010 0.78949 1.17852 1.20352 1.20420 1.20960 0.98771 0.93624 0.88292 1.23524 0.98676 1.01763 0.97122 1.22730 0.84543 0.95203 1.00836 1.87663 1.39296 1.59874 1.40236 0.90922 0.89883 0.91345 0.87616 0.87323 0.84295 0.84196 0.97505 0.97691 0.92377 0.91040 0.88746 0.91082 0.87897 0.92682 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.42 71.98 0.68 -1.51 16 2 C 0.05 0.97 2.63 28.87 0.08 1.05 16 3 H 0.07 1.28 6.77 -2.39 -0.02 1.27 16 4 C 0.09 1.98 5.54 83.95 0.46 2.45 16 5 N -0.99 -26.22 2.82 -518.65 -1.46 -27.68 16 6 S 2.61 95.08 5.46 -56.49 -0.31 94.77 16 7 O -0.99 -41.04 16.64 -127.65 -2.12 -43.16 16 8 O -0.99 -42.26 16.56 -127.65 -2.11 -44.38 16 9 C -0.59 -22.03 6.12 71.99 0.44 -21.59 16 10 C 0.02 1.16 4.98 29.85 0.15 1.31 16 11 C -0.54 -29.30 9.11 25.60 0.23 -29.06 16 12 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 13 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 14 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 15 Si 0.97 42.80 29.54 68.60 2.03 44.82 16 16 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 19 C 0.11 2.53 5.29 87.75 0.46 3.00 16 20 C -0.17 -3.32 6.75 32.15 0.22 -3.10 16 21 C 0.04 0.86 6.38 72.73 0.46 1.32 16 22 O -0.35 -7.13 9.83 -137.15 -1.35 -8.48 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.11 2.37 6.95 -2.38 -0.02 2.35 16 28 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 29 H 0.14 4.53 8.14 -2.39 -0.02 4.52 16 30 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.07 1.84 6.82 -2.39 -0.02 1.83 16 34 H 0.09 1.84 7.98 -2.39 -0.02 1.82 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.11 6.66 -2.39 -0.02 1.10 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -72.88 317.91 -0.37 -73.25 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.03 Total: 13.07 kcal Atomic # 6 Polarization: -49.53 SS G_CDS: 3.65 Total: -45.88 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -1.18 Total: -84.01 kcal Atomic # 8 Polarization: -90.43 SS G_CDS: -5.59 Total: -96.02 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 95.08 SS G_CDS: -0.31 Total: 94.77 kcal Total: -72.88 -0.37 -73.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171766318.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.464 kcal (2) G-P(sol) polarization free energy of solvation -72.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds