Wall clock time and date at job start Mon Mar 30 2020 01:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 13 13 S 1.65605 * 119.99754 * 264.99661 * 12 2 1 14 14 O 1.42101 * 104.27672 * 181.07167 * 13 12 2 15 15 O 1.42096 * 104.28082 * 308.93377 * 13 12 2 16 16 C 1.81404 * 104.44665 * 65.00384 * 13 12 2 17 17 C 1.53006 * 109.46866 * 179.97438 * 16 13 12 18 18 C 1.53178 * 109.54436 * 294.55431 * 17 16 13 19 19 C 1.53089 * 109.16111 * 183.15675 * 18 17 16 20 20 O 1.42899 * 109.41667 * 57.60903 * 19 18 17 21 21 C 1.42902 * 114.09736 * 298.83845 * 20 19 18 22 22 C 1.53093 * 109.41199 * 61.16263 * 21 20 19 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 27 27 H 0.97000 * 120.00636 * 85.00048 * 12 2 1 28 28 H 1.09002 * 109.46973 * 299.99691 * 16 13 12 29 29 H 1.08999 * 109.47344 * 59.99857 * 16 13 12 30 30 H 1.08996 * 109.54004 * 54.82841 * 17 16 13 31 31 H 1.09003 * 109.52332 * 303.06122 * 18 17 16 32 32 H 1.08999 * 109.51986 * 63.24456 * 18 17 16 33 33 H 1.09006 * 109.47656 * 297.62357 * 19 18 17 34 34 H 1.08997 * 109.47926 * 177.59251 * 19 18 17 35 35 H 1.08997 * 109.48267 * 301.18042 * 21 20 19 36 36 H 1.09001 * 109.49057 * 181.14718 * 21 20 19 37 37 H 1.09003 * 109.52222 * 182.48296 * 22 21 20 38 38 H 1.08994 * 109.52461 * 62.29687 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1210 -4.0081 12 7 2.0183 -0.6906 1.1962 13 16 2.4122 0.1772 2.5505 14 8 2.8605 -0.8029 3.4766 15 8 3.2874 1.1907 2.0751 16 6 0.8407 0.8989 3.0984 17 6 1.0750 1.7341 4.3589 18 6 1.5104 0.8182 5.5069 19 6 1.6660 1.6504 6.7823 20 8 0.4315 2.3086 7.0737 21 6 -0.0013 3.2140 6.0562 22 6 -0.2240 2.4445 4.7516 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7096 1.1617 -3.4844 27 1 2.1109 -1.6562 1.1950 28 1 0.4386 1.5353 2.3100 29 1 0.1314 0.1010 3.3184 30 1 1.8516 2.4743 4.1665 31 1 0.7555 0.0478 5.6645 32 1 2.4631 0.3505 5.2584 33 1 2.4494 2.3945 6.6375 34 1 1.9342 0.9969 7.6123 35 1 0.7602 3.9784 5.9019 36 1 -0.9342 3.6869 6.3631 37 1 -0.5116 3.1400 3.9631 38 1 -1.0138 1.7070 4.8940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173079494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:47 Heat of formation + Delta-G solvation = -137.437909 kcal Electronic energy + Delta-G solvation = -20633.151705 eV Core-core repulsion = 17409.184465 eV Total energy + Delta-G solvation = -3223.967240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.53579 -36.62001 -35.58176 -35.40935 -35.04146 -32.22363 -31.25842 -28.84195 -28.28751 -25.32235 -23.76395 -23.38820 -21.00691 -20.27505 -18.76194 -17.51945 -16.62923 -16.30480 -16.07893 -15.72183 -15.48771 -15.00390 -14.83308 -14.47963 -13.78727 -13.63462 -13.01641 -12.76665 -12.73723 -12.20239 -12.19062 -11.81473 -11.69509 -11.50893 -11.43296 -11.29206 -11.16082 -11.03870 -10.99010 -10.69114 -10.50144 -10.39826 -10.19976 -10.05821 -9.62683 -9.25503 -8.65370 -8.31235 -6.16613 -4.23305 0.79882 3.26251 3.30675 3.32351 3.42438 3.72464 4.17552 4.33760 4.37715 4.53497 4.58481 4.77456 4.86903 5.06552 5.15923 5.16420 5.27079 5.37043 5.42909 5.52459 5.58685 5.68178 5.84527 5.89865 5.99532 6.15608 6.27503 6.66513 6.70161 6.91354 7.02481 7.50705 7.60654 7.83606 7.95878 8.22574 8.79184 9.42746 10.89869 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.037309 B = 0.004525 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.300542 B = 6185.907280 C = 6613.701188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.520 4.520 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -1.103 6.103 13 S 2.606 3.394 14 O -0.979 6.979 15 O -0.960 6.960 16 C -0.631 4.631 17 C -0.077 4.077 18 C -0.180 4.180 19 C 0.063 3.937 20 O -0.385 6.385 21 C 0.058 3.942 22 C -0.143 4.143 23 H 0.012 0.988 24 H 0.095 0.905 25 H 0.036 0.964 26 H 0.265 0.735 27 H 0.408 0.592 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 2.771 14.068 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.160 3.840 3 H 0.068 0.932 4 C -0.560 4.560 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.863 5.863 13 S 2.698 3.302 14 O -0.969 6.969 15 O -0.950 6.950 16 C -0.759 4.759 17 C -0.097 4.097 18 C -0.218 4.218 19 C -0.014 4.014 20 O -0.303 6.303 21 C -0.019 4.019 22 C -0.182 4.182 23 H 0.031 0.969 24 H 0.114 0.886 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.242 0.758 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.587 3.156 14.456 15.021 hybrid contribution -0.391 -0.744 -1.409 1.640 sum -2.978 2.412 13.047 13.598 Atomic orbital electron populations 1.22406 0.98752 1.00234 1.00915 1.18626 0.90544 0.93247 0.81600 0.93174 1.21174 1.31873 1.13154 0.89801 0.91776 1.24917 0.94852 0.95025 0.99126 1.69837 1.36313 1.22619 1.24091 0.86484 0.79347 0.79554 0.81600 1.20163 1.21149 1.20072 1.55542 1.83980 1.19108 1.27643 1.04868 0.76807 0.74854 0.73660 1.93516 1.80130 1.59006 1.64244 1.93588 1.60727 1.61359 1.79293 1.30884 1.25609 1.12150 1.07221 1.20905 0.99430 0.97130 0.92257 1.22701 1.04411 0.99157 0.95530 1.22574 0.86135 0.95404 0.97302 1.87915 1.39945 1.59075 1.43399 1.22626 1.00133 0.91339 0.87761 1.22211 0.97343 1.00493 0.98135 0.96907 0.88623 0.94453 0.92501 0.75834 0.84382 0.85096 0.89776 0.89835 0.88956 0.92888 0.88399 0.92971 0.88707 0.90217 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.26 37.16 0.34 -3.17 16 2 C 0.26 6.22 2.79 -69.08 -0.19 6.02 16 3 H 0.05 1.29 7.48 -51.93 -0.39 0.91 16 4 C -0.52 -13.66 8.76 -34.44 -0.30 -13.96 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.07 11.32 55.43 0.63 -23.45 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -1.10 -21.85 5.35 -5.88 -0.03 -21.88 16 13 S 2.61 46.59 5.10 -107.50 -0.55 46.04 16 14 O -0.98 -18.23 15.91 -57.54 -0.92 -19.14 16 15 O -0.96 -20.85 17.39 -57.54 -1.00 -21.85 16 16 C -0.63 -8.74 4.67 37.16 0.17 -8.57 16 17 C -0.08 -0.97 2.27 -90.43 -0.21 -1.17 16 18 C -0.18 -2.20 5.02 -26.59 -0.13 -2.33 16 19 C 0.06 0.67 6.84 37.20 0.25 0.92 16 20 O -0.38 -4.52 10.77 -35.23 -0.38 -4.90 16 21 C 0.06 0.57 6.84 37.21 0.25 0.83 16 22 C -0.14 -1.51 5.42 -26.59 -0.14 -1.66 16 23 H 0.01 0.22 5.78 -51.93 -0.30 -0.08 16 24 H 0.10 2.29 6.07 -51.93 -0.32 1.98 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.41 7.50 8.79 -34.47 -0.30 7.20 16 28 H 0.14 1.90 6.77 -51.92 -0.35 1.55 16 29 H 0.13 1.58 8.14 -51.92 -0.42 1.16 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.22 5.85 -51.93 -0.30 0.92 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 312.16 15.07 4.70 4.70 Total: -1.00 -31.24 312.16 -8.34 -39.58 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.73 Total: 6.83 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.50 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.60 Total: -45.33 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -2.30 Total: -45.89 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 46.59 SS G_CDS: -0.55 Total: 46.04 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.24 -8.34 -39.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173079494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.858 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds