Wall clock time and date at job start Mon Mar 30 2020 01:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 13 13 S 1.65605 * 119.99754 * 264.99661 * 12 2 1 14 14 O 1.42101 * 104.27672 * 181.07167 * 13 12 2 15 15 O 1.42096 * 104.28082 * 308.93377 * 13 12 2 16 16 C 1.81404 * 104.44665 * 65.00384 * 13 12 2 17 17 C 1.53006 * 109.46866 * 179.97438 * 16 13 12 18 18 C 1.53178 * 109.54436 * 294.55431 * 17 16 13 19 19 C 1.53089 * 109.16111 * 183.15675 * 18 17 16 20 20 O 1.42899 * 109.41667 * 57.60903 * 19 18 17 21 21 C 1.42902 * 114.09736 * 298.83845 * 20 19 18 22 22 C 1.53093 * 109.41199 * 61.16263 * 21 20 19 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 27 27 H 0.97000 * 120.00636 * 85.00048 * 12 2 1 28 28 H 1.09002 * 109.46973 * 299.99691 * 16 13 12 29 29 H 1.08999 * 109.47344 * 59.99857 * 16 13 12 30 30 H 1.08996 * 109.54004 * 54.82841 * 17 16 13 31 31 H 1.09003 * 109.52332 * 303.06122 * 18 17 16 32 32 H 1.08999 * 109.51986 * 63.24456 * 18 17 16 33 33 H 1.09006 * 109.47656 * 297.62357 * 19 18 17 34 34 H 1.08997 * 109.47926 * 177.59251 * 19 18 17 35 35 H 1.08997 * 109.48267 * 301.18042 * 21 20 19 36 36 H 1.09001 * 109.49057 * 181.14718 * 21 20 19 37 37 H 1.09003 * 109.52222 * 182.48296 * 22 21 20 38 38 H 1.08994 * 109.52461 * 62.29687 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1210 -4.0081 12 7 2.0183 -0.6906 1.1962 13 16 2.4122 0.1772 2.5505 14 8 2.8605 -0.8029 3.4766 15 8 3.2874 1.1907 2.0751 16 6 0.8407 0.8989 3.0984 17 6 1.0750 1.7341 4.3589 18 6 1.5104 0.8182 5.5069 19 6 1.6660 1.6504 6.7823 20 8 0.4315 2.3086 7.0737 21 6 -0.0013 3.2140 6.0562 22 6 -0.2240 2.4445 4.7516 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7096 1.1617 -3.4844 27 1 2.1109 -1.6562 1.1950 28 1 0.4386 1.5353 2.3100 29 1 0.1314 0.1010 3.3184 30 1 1.8516 2.4743 4.1665 31 1 0.7555 0.0478 5.6645 32 1 2.4631 0.3505 5.2584 33 1 2.4494 2.3945 6.6375 34 1 1.9342 0.9969 7.6123 35 1 0.7602 3.9784 5.9019 36 1 -0.9342 3.6869 6.3631 37 1 -0.5116 3.1400 3.9631 38 1 -1.0138 1.7070 4.8940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173079494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:47 Heat of formation + Delta-G solvation = -160.793360 kcal Electronic energy + Delta-G solvation = -20634.164473 eV Core-core repulsion = 17409.184465 eV Total energy + Delta-G solvation = -3224.980008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39278 -38.15718 -37.27937 -36.97440 -36.03403 -34.12852 -32.07184 -30.16391 -29.75620 -27.24380 -24.59871 -24.36788 -22.78582 -21.20023 -20.26914 -19.16614 -18.15347 -17.37863 -17.27421 -16.98981 -16.87468 -16.50554 -15.83984 -15.63502 -15.33270 -14.75182 -14.50876 -14.06711 -13.98783 -13.71865 -13.49442 -13.22828 -13.08188 -13.05270 -12.91602 -12.78299 -12.44891 -12.34104 -12.23676 -12.21740 -12.09647 -11.98170 -11.41117 -11.16925 -11.10374 -10.59940 -10.51518 -10.02224 -8.15856 -6.29028 -0.61824 1.44564 1.46047 1.53184 1.92311 2.43561 2.81388 2.97421 3.14095 3.26148 3.41744 3.58898 3.72393 4.02384 4.16018 4.24954 4.33165 4.44421 4.52689 4.57473 4.66772 4.76731 4.79316 4.86631 4.92491 5.01307 5.09091 5.09966 5.15634 5.27078 5.57888 5.78122 6.05270 6.14156 6.23769 6.42088 6.80778 7.40193 8.89216 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.037309 B = 0.004525 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.300542 B = 6185.907280 C = 6613.701188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.267 3.733 3 H 0.021 0.979 4 C -0.546 4.546 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.278 1.278 12 N -1.108 6.108 13 S 2.607 3.393 14 O -0.989 6.989 15 O -1.006 7.006 16 C -0.604 4.604 17 C -0.085 4.085 18 C -0.184 4.184 19 C 0.061 3.939 20 O -0.398 6.398 21 C 0.053 3.947 22 C -0.140 4.140 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.266 0.734 27 H 0.413 0.587 28 H 0.145 0.855 29 H 0.158 0.842 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 2.777 15.002 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.161 3.839 3 H 0.039 0.961 4 C -0.585 4.585 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.550 5.550 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.203 1.203 12 N -0.867 5.867 13 S 2.704 3.296 14 O -0.979 6.979 15 O -0.997 6.997 16 C -0.737 4.737 17 C -0.105 4.105 18 C -0.222 4.222 19 C -0.016 4.016 20 O -0.317 6.317 21 C -0.023 4.023 22 C -0.179 4.179 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.247 0.753 28 H 0.163 0.837 29 H 0.176 0.824 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.808 3.126 15.375 16.145 hybrid contribution -0.002 -0.711 -1.601 1.752 sum -3.810 2.415 13.774 14.494 Atomic orbital electron populations 1.22236 0.97001 1.00713 1.01473 1.18364 0.91817 0.91657 0.82063 0.96137 1.21573 1.32120 1.13390 0.91413 0.92198 1.25640 0.95082 0.95729 1.01715 1.69946 1.36964 1.23507 1.24627 0.85592 0.78488 0.78911 0.78521 1.19271 1.20620 1.20345 1.55390 1.84263 1.19375 1.27626 1.04708 0.77949 0.74057 0.72894 1.93500 1.81253 1.59455 1.63718 1.93529 1.63814 1.62251 1.80060 1.30626 1.21930 1.12996 1.08149 1.21058 1.00869 0.97156 0.91443 1.22728 1.03747 0.99469 0.96227 1.22654 0.86219 0.95683 0.97043 1.87904 1.40191 1.59426 1.44150 1.22805 1.01361 0.91124 0.87039 1.22222 0.95960 1.00749 0.98931 0.93241 0.91151 0.93919 0.92453 0.75311 0.83682 0.82419 0.89933 0.89342 0.90454 0.92194 0.87023 0.92275 0.86717 0.89058 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.50 9.26 71.98 0.67 -5.83 16 2 C 0.27 12.61 2.79 44.25 0.12 12.73 16 3 H 0.02 1.10 7.48 -2.39 -0.02 1.08 16 4 C -0.55 -28.91 8.76 25.60 0.22 -28.69 16 5 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.02 0.99 5.30 84.66 0.45 1.44 16 7 N -0.91 -49.62 11.32 21.45 0.24 -49.38 16 8 Si 0.96 42.18 29.54 68.60 2.03 44.20 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 N -1.11 -43.81 5.35 -172.52 -0.92 -44.74 16 13 S 2.61 92.49 5.10 -56.49 -0.29 92.21 16 14 O -0.99 -36.49 15.91 -127.65 -2.03 -38.52 16 15 O -1.01 -44.67 17.39 -127.65 -2.22 -46.89 16 16 C -0.60 -15.40 4.67 71.98 0.34 -15.07 16 17 C -0.09 -1.94 2.27 -10.67 -0.02 -1.96 16 18 C -0.18 -4.15 5.02 30.68 0.15 -4.00 16 19 C 0.06 1.18 6.84 72.01 0.49 1.67 16 20 O -0.40 -8.32 10.77 -148.98 -1.60 -9.93 16 21 C 0.05 0.89 6.84 72.01 0.49 1.38 16 22 C -0.14 -2.52 5.42 30.69 0.17 -2.35 16 23 H 0.05 1.65 5.78 -2.39 -0.01 1.63 16 24 H 0.07 3.35 6.07 -2.39 -0.01 3.34 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 27 H 0.41 15.17 8.79 -96.74 -0.85 14.32 16 28 H 0.15 3.62 6.77 -2.39 -0.02 3.60 16 29 H 0.16 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 1.98 5.85 -2.39 -0.01 1.96 16 33 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -66.96 312.16 -1.51 -68.47 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.21 Total: 25.25 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 3.08 Total: -40.68 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -0.68 Total: -94.12 kcal Atomic # 8 Polarization: -89.48 SS G_CDS: -5.86 Total: -95.34 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 92.49 SS G_CDS: -0.29 Total: 92.21 kcal Total: -66.96 -1.51 -68.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173079494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.325 kcal (2) G-P(sol) polarization free energy of solvation -66.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds