Wall clock time and date at job start Mon Mar 30 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 119.99705 * 2 1 4 4 O 1.21551 * 120.00242 * 359.97438 * 3 2 1 5 5 C 1.47856 * 119.99744 * 180.02562 * 3 2 1 6 6 C 1.39707 * 120.07442 * 359.97438 * 5 3 2 7 7 C 1.38073 * 120.15931 * 179.77112 * 6 5 3 8 8 C 1.38082 * 120.29827 * 0.51332 * 7 6 5 9 9 C 1.39715 * 120.14041 * 359.48362 * 8 7 6 10 10 C 1.47746 * 120.08070 * 180.23542 * 9 8 7 11 11 O 1.21473 * 120.00069 * 180.02562 * 10 9 8 12 12 O 1.34704 * 119.99900 * 0.02562 * 10 9 8 13 13 C 1.45198 * 117.00031 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47183 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.47280 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00100 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00281 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99814 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00088 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47408 * 59.99892 * 19 17 15 21 21 H 1.48497 * 109.47147 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47233 * 299.99917 * 19 17 15 23 23 C 1.39290 * 120.07159 * 179.97438 * 5 3 2 24 24 H 1.09003 * 109.46941 * 60.00409 * 1 2 3 25 25 H 1.08998 * 109.46628 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47130 * 300.00026 * 1 2 3 27 27 H 0.97002 * 120.00041 * 179.97438 * 2 1 3 28 28 H 1.07999 * 119.91942 * 0.02562 * 6 5 3 29 29 H 1.07994 * 119.85148 * 180.25549 * 7 6 5 30 30 H 1.08002 * 119.93203 * 179.76982 * 8 7 6 31 31 H 1.09003 * 109.47113 * 299.99929 * 13 12 10 32 32 H 1.08994 * 109.47662 * 59.99715 * 13 12 10 33 33 H 1.09003 * 109.46725 * 299.99783 * 14 13 12 34 34 H 1.09005 * 109.47722 * 59.99489 * 14 13 12 35 35 H 0.96993 * 120.00305 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.14801 * 359.97438 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6174 1.1672 -0.0006 6 6 4.3176 -0.0417 -0.0006 7 6 5.6983 -0.0438 -0.0059 8 6 6.3967 1.1474 -0.0005 9 6 5.7092 2.3637 -0.0006 10 6 6.4579 3.6374 -0.0001 11 8 5.8587 4.6941 0.0003 12 8 7.8049 3.6270 -0.0002 13 6 8.4741 4.9155 0.0009 14 6 9.9893 4.7033 0.0001 15 6 10.6839 6.0406 0.0005 16 1 10.1028 6.9509 0.0009 17 6 12.0614 6.1021 0.0004 18 7 12.7690 4.9936 0.0005 19 14 12.9223 7.7598 0.0017 20 1 12.5293 8.5208 1.2148 21 1 14.3929 7.5538 0.0008 22 1 12.5291 8.5228 -1.2101 23 6 4.3154 2.3727 -0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9501 -0.8401 0.0004 28 1 3.7775 -0.9770 -0.0006 29 1 6.2344 -0.9812 -0.0100 30 1 7.4767 1.1388 -0.0010 31 1 8.1856 5.4755 -0.8886 32 1 8.1856 5.4741 0.8912 33 1 10.2782 4.1431 0.8894 34 1 10.2776 4.1448 -0.8906 35 1 13.7380 5.0367 0.0000 36 1 3.7790 3.3101 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173574468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:52 Heat of formation + Delta-G solvation = -105.084580 kcal Electronic energy + Delta-G solvation = -19929.010316 eV Core-core repulsion = 16571.002070 eV Total energy + Delta-G solvation = -3358.008245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.66039 -39.82386 -38.27250 -36.10154 -35.05234 -33.37808 -32.00462 -31.37750 -30.19572 -27.38400 -25.45415 -24.21615 -23.36330 -21.50503 -20.95981 -20.34431 -18.73694 -17.13725 -16.55482 -16.30602 -16.14714 -15.97006 -15.85078 -15.55041 -14.69019 -14.57073 -14.28344 -14.00037 -13.65054 -13.27400 -12.92557 -12.70625 -12.54062 -12.36482 -12.18521 -11.61741 -11.25790 -11.06898 -10.75639 -10.73043 -10.40002 -10.26843 -9.68558 -9.65283 -9.60351 -9.34846 -9.33254 -9.27005 -8.45121 -6.11644 -4.15933 0.35613 0.78235 2.31334 2.72105 2.90840 3.10057 3.30094 3.33931 3.37930 3.65598 4.28369 4.36960 4.46285 4.54840 4.80028 4.90933 4.97275 5.11449 5.12872 5.25038 5.37967 5.44915 5.59775 5.86786 5.94481 5.98260 6.07690 6.07746 6.10240 6.44465 6.61372 6.89877 7.04672 7.53127 7.59943 7.83605 7.84830 8.12689 8.23126 8.89249 9.48480 10.99834 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.048464 B = 0.002762 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.611682 B =10136.466607 C =10688.329746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.561 3.439 4 O -0.530 6.530 5 C -0.154 4.154 6 C -0.060 4.060 7 C -0.138 4.138 8 C -0.033 4.033 9 C -0.122 4.122 10 C 0.499 3.501 11 O -0.508 6.508 12 O -0.352 6.352 13 C 0.075 3.925 14 C 0.025 3.975 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.001 3.999 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.401 0.599 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.529 -16.759 -0.005 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.348 3.652 4 O -0.406 6.406 5 C -0.157 4.157 6 C -0.078 4.078 7 C -0.156 4.156 8 C -0.052 4.052 9 C -0.123 4.123 10 C 0.343 3.657 11 O -0.398 6.398 12 O -0.268 6.268 13 C 0.003 3.997 14 C -0.012 4.012 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.728 3.272 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.018 4.018 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.236 0.764 28 H 0.148 0.852 29 H 0.157 0.843 30 H 0.168 0.832 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.943 -15.723 -0.005 25.396 hybrid contribution 0.760 0.520 0.001 0.921 sum -19.184 -15.203 -0.003 24.477 Atomic orbital electron populations 1.21569 0.79032 1.02356 1.02659 1.45681 1.07972 1.08509 1.76458 1.18221 0.87058 0.83802 0.76085 1.90813 1.69798 1.31087 1.48947 1.19733 0.92808 0.94088 1.09056 1.21486 0.94820 0.96727 0.94796 1.21137 0.93694 0.98672 1.02110 1.21875 1.01828 0.90928 0.90530 1.19268 0.92940 0.92048 1.08071 1.20989 0.82399 0.88772 0.73503 1.90824 1.70324 1.32903 1.45773 1.86550 1.18459 1.39098 1.82669 1.23711 0.95244 0.79544 1.01201 1.19170 0.84886 0.98229 0.98887 1.20941 0.91450 0.91825 1.52317 0.92263 1.24980 0.97391 0.96932 0.94828 1.69957 1.06402 1.26808 1.49713 0.86520 0.78264 0.83626 0.78821 1.20045 1.21130 1.20051 1.21386 0.92120 0.98768 0.89532 0.91983 0.90477 0.91978 0.76385 0.85226 0.84263 0.83230 0.92099 0.92093 0.95307 0.95310 0.92645 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.73 -5.15 5.66 -68.04 -0.39 -5.53 16 3 C 0.56 6.33 7.77 -12.32 -0.10 6.24 16 4 O -0.53 -8.18 16.34 5.32 0.09 -8.09 16 5 C -0.15 -1.67 5.87 -105.02 -0.62 -2.28 16 6 C -0.06 -0.45 9.54 -39.09 -0.37 -0.82 16 7 C -0.14 -1.12 10.02 -39.70 -0.40 -1.52 16 8 C -0.03 -0.38 9.61 -39.09 -0.38 -0.75 16 9 C -0.12 -1.75 5.87 -105.03 -0.62 -2.37 16 10 C 0.50 9.17 7.90 34.62 0.27 9.44 16 11 O -0.51 -10.62 16.13 -19.25 -0.31 -10.93 16 12 O -0.35 -6.99 9.46 -40.50 -0.38 -7.37 16 13 C 0.08 1.68 5.41 37.16 0.20 1.88 16 14 C 0.03 0.66 5.35 -27.89 -0.15 0.51 16 15 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 19 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.00 0.01 9.14 -38.76 -0.35 -0.34 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.40 1.49 6.85 -40.82 -0.28 1.21 16 28 H 0.13 0.46 6.39 -52.49 -0.34 0.12 16 29 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.15 1.66 7.60 -52.49 -0.40 1.26 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.15 2.30 7.23 -52.48 -0.38 1.92 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -34.55 322.65 -7.00 -41.56 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -4.32 Total: -3.07 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.27 Total: -2.35 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.35 Total: -30.98 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.61 Total: -26.40 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.55 -7.00 -41.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173574468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.526 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds