Wall clock time and date at job start Mon Mar 30 2020 02:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 119.99705 * 2 1 4 4 O 1.21551 * 120.00242 * 359.97438 * 3 2 1 5 5 C 1.47856 * 119.99744 * 180.02562 * 3 2 1 6 6 C 1.39707 * 120.07442 * 359.97438 * 5 3 2 7 7 C 1.38073 * 120.15931 * 179.77112 * 6 5 3 8 8 C 1.38082 * 120.29827 * 0.51332 * 7 6 5 9 9 C 1.39715 * 120.14041 * 359.48362 * 8 7 6 10 10 C 1.47746 * 120.08070 * 180.23542 * 9 8 7 11 11 O 1.21473 * 120.00069 * 180.02562 * 10 9 8 12 12 O 1.34704 * 119.99900 * 0.02562 * 10 9 8 13 13 C 1.45198 * 117.00031 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47183 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.47280 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00100 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00281 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99814 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00088 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47408 * 59.99892 * 19 17 15 21 21 H 1.48497 * 109.47147 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47233 * 299.99917 * 19 17 15 23 23 C 1.39290 * 120.07159 * 179.97438 * 5 3 2 24 24 H 1.09003 * 109.46941 * 60.00409 * 1 2 3 25 25 H 1.08998 * 109.46628 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47130 * 300.00026 * 1 2 3 27 27 H 0.97002 * 120.00041 * 179.97438 * 2 1 3 28 28 H 1.07999 * 119.91942 * 0.02562 * 6 5 3 29 29 H 1.07994 * 119.85148 * 180.25549 * 7 6 5 30 30 H 1.08002 * 119.93203 * 179.76982 * 8 7 6 31 31 H 1.09003 * 109.47113 * 299.99929 * 13 12 10 32 32 H 1.08994 * 109.47662 * 59.99715 * 13 12 10 33 33 H 1.09003 * 109.46725 * 299.99783 * 14 13 12 34 34 H 1.09005 * 109.47722 * 59.99489 * 14 13 12 35 35 H 0.96993 * 120.00305 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.14801 * 359.97438 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6174 1.1672 -0.0006 6 6 4.3176 -0.0417 -0.0006 7 6 5.6983 -0.0438 -0.0059 8 6 6.3967 1.1474 -0.0005 9 6 5.7092 2.3637 -0.0006 10 6 6.4579 3.6374 -0.0001 11 8 5.8587 4.6941 0.0003 12 8 7.8049 3.6270 -0.0002 13 6 8.4741 4.9155 0.0009 14 6 9.9893 4.7033 0.0001 15 6 10.6839 6.0406 0.0005 16 1 10.1028 6.9509 0.0009 17 6 12.0614 6.1021 0.0004 18 7 12.7690 4.9936 0.0005 19 14 12.9223 7.7598 0.0017 20 1 12.5293 8.5208 1.2148 21 1 14.3929 7.5538 0.0008 22 1 12.5291 8.5228 -1.2101 23 6 4.3154 2.3727 -0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9501 -0.8401 0.0004 28 1 3.7775 -0.9770 -0.0006 29 1 6.2344 -0.9812 -0.0100 30 1 7.4767 1.1388 -0.0010 31 1 8.1856 5.4755 -0.8886 32 1 8.1856 5.4741 0.8912 33 1 10.2782 4.1431 0.8894 34 1 10.2776 4.1448 -0.8906 35 1 13.7380 5.0367 0.0000 36 1 3.7790 3.3101 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173574468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:51 Heat of formation + Delta-G solvation = -128.523735 kcal Electronic energy + Delta-G solvation = -19930.026714 eV Core-core repulsion = 16571.002070 eV Total energy + Delta-G solvation = -3359.024644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79349 -41.03042 -39.25174 -37.72464 -35.82066 -35.47116 -33.07116 -32.28213 -32.06815 -28.08948 -27.23415 -25.44171 -24.35593 -22.96095 -22.37976 -21.44937 -19.79622 -18.73695 -18.04142 -17.60496 -17.45506 -17.23447 -16.91859 -16.50152 -16.34844 -15.63793 -15.21972 -15.15722 -14.83909 -14.47391 -14.36461 -14.14414 -13.53601 -13.20685 -13.14564 -13.11487 -12.94528 -12.65756 -12.60770 -12.48404 -11.94874 -11.59203 -11.53851 -11.43326 -11.22265 -10.61597 -10.40937 -10.22748 -10.04129 -8.27936 -6.40886 -0.55435 -0.16211 1.26503 1.39889 1.44089 1.50032 1.57762 1.82419 2.14549 2.39533 2.72173 3.06382 3.48177 3.58457 3.75291 3.93896 4.02664 4.18186 4.20986 4.25525 4.41960 4.59214 4.62994 4.66088 4.80167 4.96838 5.01410 5.14813 5.17387 5.25509 5.32274 5.45152 5.45896 5.64812 5.71613 6.05432 6.44495 6.58959 6.71860 7.11682 7.28495 8.84365 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.048464 B = 0.002762 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.611682 B =10136.466607 C =10688.329746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.711 5.711 3 C 0.555 3.445 4 O -0.584 6.584 5 C -0.159 4.159 6 C -0.028 4.028 7 C -0.120 4.120 8 C -0.036 4.036 9 C -0.147 4.147 10 C 0.497 3.503 11 O -0.544 6.544 12 O -0.353 6.353 13 C 0.089 3.911 14 C 0.034 3.966 15 C -0.553 4.553 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.017 4.017 24 H 0.050 0.950 25 H 0.120 0.880 26 H 0.050 0.950 27 H 0.421 0.579 28 H 0.185 0.815 29 H 0.185 0.815 30 H 0.149 0.851 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.269 0.731 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.054 -19.656 -0.006 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.363 5.363 3 C 0.343 3.657 4 O -0.465 6.465 5 C -0.162 4.162 6 C -0.047 4.047 7 C -0.137 4.137 8 C -0.054 4.054 9 C -0.148 4.148 10 C 0.344 3.656 11 O -0.436 6.436 12 O -0.269 6.269 13 C 0.016 3.984 14 C -0.003 4.003 15 C -0.591 4.591 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.563 5.563 19 Si 0.796 3.204 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.036 4.036 24 H 0.069 0.931 25 H 0.138 0.862 26 H 0.069 0.931 27 H 0.260 0.740 28 H 0.202 0.798 29 H 0.202 0.798 30 H 0.167 0.833 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.483 -18.691 -0.006 27.729 hybrid contribution 0.814 1.233 0.002 1.477 sum -19.669 -17.458 -0.004 26.299 Atomic orbital electron populations 1.21760 0.77987 1.04820 1.01577 1.45560 1.08663 1.07971 1.74122 1.18393 0.87267 0.84245 0.75779 1.90793 1.70714 1.33270 1.51756 1.19804 0.92811 0.94302 1.09263 1.22044 0.94798 0.97185 0.90631 1.21617 0.93935 0.98798 0.99398 1.22023 1.02030 0.91007 0.90364 1.19035 0.92804 0.91035 1.11933 1.21800 0.81490 0.90218 0.72069 1.90793 1.70526 1.34610 1.47693 1.86530 1.19750 1.37453 1.83154 1.23249 0.93459 0.80633 1.01031 1.18967 0.87171 0.97210 0.96985 1.21334 0.92307 0.92660 1.52795 0.91915 1.25931 0.98094 1.01057 0.94030 1.70069 1.06908 1.29151 1.50173 0.85393 0.77149 0.78635 0.79242 1.19178 1.20278 1.19186 1.21200 0.91876 0.99137 0.91402 0.93143 0.86150 0.93136 0.73992 0.79783 0.79754 0.83297 0.92259 0.92249 0.97141 0.97145 0.92249 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.70 127.77 1.37 2.10 16 2 N -0.71 -7.72 5.66 -487.45 -2.76 -10.48 16 3 C 0.56 11.97 7.77 86.79 0.67 12.64 16 4 O -0.58 -18.76 16.34 -3.88 -0.06 -18.83 16 5 C -0.16 -3.20 5.87 -20.12 -0.12 -3.32 16 6 C -0.03 -0.29 9.54 22.59 0.22 -0.08 16 7 C -0.12 -1.39 10.02 22.19 0.22 -1.17 16 8 C -0.04 -0.76 9.61 22.59 0.22 -0.54 16 9 C -0.15 -4.33 5.87 -20.13 -0.12 -4.45 16 10 C 0.50 19.34 7.90 70.34 0.56 19.90 16 11 O -0.54 -24.40 16.13 19.92 0.32 -24.07 16 12 O -0.35 -14.67 9.46 -56.14 -0.53 -15.20 16 13 C 0.09 4.16 5.41 71.98 0.39 4.55 16 14 C 0.03 1.83 5.35 29.85 0.16 1.99 16 15 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 16 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 17 C 0.01 0.47 5.46 84.66 0.46 0.93 16 18 N -0.92 -55.02 13.29 21.45 0.28 -54.74 16 19 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 C -0.02 -0.48 9.14 22.80 0.21 -0.27 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.42 0.89 6.85 -92.71 -0.64 0.25 16 28 H 0.19 -0.10 6.39 -2.91 -0.02 -0.12 16 29 H 0.19 0.63 8.06 -2.91 -0.02 0.60 16 30 H 0.15 3.15 7.60 -2.91 -0.02 3.13 16 31 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.12 4.08 7.23 -2.91 -0.02 4.06 16 Total: -1.00 -80.73 322.65 4.22 -76.52 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: 0.47 Total: 0.06 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 4.47 Total: 0.84 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -2.48 Total: -65.22 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: -0.27 Total: -58.10 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -80.73 4.22 -76.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173574468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.008 kcal (2) G-P(sol) polarization free energy of solvation -80.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds