Wall clock time and date at job start Mon Mar 30 2020 01:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 S 1.65603 * 119.99810 * 94.99963 * 12 2 1 14 14 O 1.42102 * 104.27902 * 181.07148 * 13 12 2 15 15 O 1.42094 * 104.27834 * 308.93143 * 13 12 2 16 16 C 1.81398 * 104.44892 * 65.00241 * 13 12 2 17 17 C 1.53004 * 109.47453 * 179.97438 * 16 13 12 18 18 C 1.52999 * 109.47443 * 180.02562 * 17 16 13 19 19 H 1.09002 * 109.82377 * 305.57088 * 18 17 16 20 20 C 1.54375 * 109.82917 * 184.58605 * 18 17 16 21 21 C 1.55306 * 102.25341 * 219.12636 * 20 18 17 22 22 C 1.54947 * 100.94033 * 34.13837 * 21 20 18 23 23 O 1.43245 * 109.82799 * 66.45298 * 18 17 16 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00849 * 275.00464 * 12 2 1 29 29 H 1.09000 * 109.47405 * 300.00308 * 16 13 12 30 30 H 1.09003 * 109.47320 * 60.00317 * 16 13 12 31 31 H 1.09007 * 109.46608 * 300.00040 * 17 16 13 32 32 H 1.08997 * 109.46812 * 59.99495 * 17 16 13 33 33 H 1.08993 * 110.85274 * 337.32077 * 20 18 17 34 34 H 1.09008 * 110.84707 * 100.94158 * 20 18 17 35 35 H 1.08994 * 111.12891 * 276.22269 * 21 20 18 36 36 H 1.08993 * 111.16144 * 152.06709 * 21 20 18 37 37 H 1.09004 * 110.31341 * 204.63986 * 22 21 20 38 38 H 1.08997 * 110.31249 * 82.46440 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 16 2.4122 0.1771 -2.5505 14 8 2.8122 -0.8077 -3.4936 15 8 1.2751 0.9965 -2.7846 16 6 3.8313 1.1871 -2.0441 17 6 4.2942 2.0443 -3.2239 18 6 5.4916 2.8957 -2.7970 19 1 5.2366 3.4729 -1.9082 20 6 5.8933 3.8472 -3.9444 21 6 7.4442 3.8190 -3.8683 22 6 7.6903 2.3550 -3.4245 23 8 6.6151 2.0508 -2.5218 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9026 -0.5284 4.4375 28 1 2.1109 -1.6562 -1.1949 29 1 3.5400 1.8341 -1.2167 30 1 4.6459 0.5361 -1.7268 31 1 4.5857 1.3968 -4.0510 32 1 3.4798 2.6952 -3.5417 33 1 5.5451 3.4660 -4.9043 34 1 5.5143 4.8533 -3.7647 35 1 7.8138 4.5229 -3.1226 36 1 7.8897 4.0139 -4.8437 37 1 8.6491 2.2708 -2.9128 38 1 7.6607 1.6884 -4.2863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177578686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:49 Heat of formation + Delta-G solvation = -126.634713 kcal Electronic energy + Delta-G solvation = -20357.822666 eV Core-core repulsion = 17134.323888 eV Total energy + Delta-G solvation = -3223.498778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.68003 -36.68322 -35.70494 -35.44539 -33.87399 -32.29709 -32.23287 -29.17579 -28.62703 -25.12319 -24.17158 -21.88611 -21.09683 -21.03298 -18.80418 -17.62272 -17.20025 -16.52640 -16.08983 -15.81039 -15.61561 -15.04394 -14.61237 -14.21884 -13.76185 -13.58969 -13.15159 -13.03604 -12.52390 -12.40086 -12.20118 -12.02100 -11.82446 -11.67193 -11.61849 -11.53389 -11.47851 -11.19977 -11.17637 -11.04935 -10.69209 -10.30376 -10.20035 -9.64841 -9.57586 -9.31702 -8.82983 -8.45236 -6.21071 -4.23427 0.77018 3.20872 3.29043 3.32219 3.34348 3.63906 4.14766 4.23283 4.28217 4.51965 4.61485 4.63851 4.78730 4.93169 4.98736 5.09533 5.10678 5.34631 5.41769 5.48625 5.50293 5.58304 5.65779 5.75204 5.97996 6.00333 6.06554 6.25011 6.53854 6.62832 6.89935 6.98012 7.25031 7.41193 7.89475 8.37508 8.81846 9.38437 10.91364 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.005319 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.601449 B = 5262.983459 C = 5920.366216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.246 3.754 3 H 0.036 0.964 4 C -0.529 4.529 5 H 0.084 0.916 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.883 3.117 9 H -0.274 1.274 10 H -0.294 1.294 11 H -0.264 1.264 12 N -1.096 6.096 13 S 2.608 3.392 14 O -0.977 6.977 15 O -0.966 6.966 16 C -0.627 4.627 17 C -0.121 4.121 18 C 0.088 3.912 19 H 0.087 0.913 20 C -0.155 4.155 21 C -0.157 4.157 22 C 0.047 3.953 23 O -0.372 6.372 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.267 0.733 28 H 0.414 0.586 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.927 9.542 -13.652 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.140 3.860 3 H 0.054 0.946 4 C -0.568 4.568 5 H 0.102 0.898 6 C -0.128 4.128 7 N -0.528 5.528 8 Si 0.712 3.288 9 H -0.201 1.201 10 H -0.222 1.222 11 H -0.189 1.189 12 N -0.855 5.855 13 S 2.700 3.300 14 O -0.967 6.967 15 O -0.956 6.956 16 C -0.756 4.756 17 C -0.160 4.160 18 C 0.029 3.971 19 H 0.105 0.895 20 C -0.193 4.193 21 C -0.194 4.194 22 C -0.030 4.030 23 O -0.291 6.291 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.248 0.752 29 H 0.152 0.848 30 H 0.159 0.841 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.467 9.528 -14.115 18.594 hybrid contribution -0.064 0.705 0.765 1.042 sum 7.402 10.232 -13.350 18.377 Atomic orbital electron populations 1.22597 0.98951 1.01667 0.99753 1.18856 0.90703 0.92462 0.83992 0.94629 1.21144 1.32906 1.14546 0.88233 0.89831 1.24912 0.95501 0.96732 0.95676 1.69876 1.44894 1.40034 0.98038 0.86937 0.81000 0.83536 0.77281 1.20102 1.22163 1.18945 1.55328 1.81048 1.18837 1.30320 1.04818 0.76337 0.75093 0.73739 1.93542 1.84760 1.57719 1.60692 1.93564 1.46165 1.71318 1.84522 1.30594 1.21608 1.14957 1.08424 1.21717 0.98912 0.99002 0.96358 1.22709 0.86460 0.90142 0.97806 0.89481 1.23232 0.95845 1.00715 0.99465 1.23267 0.95881 0.97703 1.02593 1.23407 0.91318 0.94616 0.93644 1.88502 1.23537 1.60466 1.56640 0.93364 0.93567 0.92304 0.92314 0.75209 0.84826 0.84114 0.90114 0.89544 0.90109 0.89701 0.90315 0.89953 0.89704 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 9.00 37.16 0.33 -3.42 16 2 C 0.25 5.55 2.25 -69.08 -0.16 5.39 16 3 H 0.04 0.78 6.21 -51.93 -0.32 0.46 16 4 C -0.53 -13.96 9.34 -34.44 -0.32 -14.28 16 5 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 6 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 8 Si 0.88 20.94 24.37 -169.99 -4.14 16.79 16 9 H -0.27 -6.38 6.87 56.52 0.39 -5.99 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.26 -5.94 6.53 56.52 0.37 -5.57 16 12 N -1.10 -21.29 5.35 -5.88 -0.03 -21.33 16 13 S 2.61 45.44 5.38 -107.50 -0.58 44.86 16 14 O -0.98 -18.72 18.08 -57.54 -1.04 -19.76 16 15 O -0.97 -19.02 17.11 -57.54 -0.98 -20.01 16 16 C -0.63 -9.21 5.87 37.16 0.22 -8.99 16 17 C -0.12 -1.50 4.79 -26.73 -0.13 -1.62 16 18 C 0.09 1.00 3.52 -26.01 -0.09 0.91 16 19 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 20 C -0.15 -1.29 6.54 -24.79 -0.16 -1.45 16 21 C -0.16 -1.18 7.16 -24.48 -0.18 -1.35 16 22 C 0.05 0.44 7.78 38.19 0.30 0.74 16 23 O -0.37 -4.90 10.63 -35.23 -0.37 -5.27 16 24 H 0.05 0.99 7.42 -51.93 -0.39 0.61 16 25 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.41 7.61 8.79 -34.47 -0.30 7.30 16 29 H 0.13 1.91 7.44 -51.92 -0.39 1.52 16 30 H 0.14 2.07 7.88 -51.92 -0.41 1.66 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.61 7.85 -51.93 -0.41 0.21 16 34 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 315.59 15.07 4.76 4.76 Total: -1.00 -33.08 315.59 -7.70 -40.78 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.79 Total: 6.58 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -0.28 Total: -22.11 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.74 Total: -46.62 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -2.40 Total: -45.05 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.14 Total: 16.79 kcal Atomic # 16 Polarization: 45.44 SS G_CDS: -0.58 Total: 44.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.08 -7.70 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177578686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.853 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds