Wall clock time and date at job start Mon Mar 30 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 S 1.65603 * 119.99810 * 94.99963 * 12 2 1 14 14 O 1.42102 * 104.27902 * 181.07148 * 13 12 2 15 15 O 1.42094 * 104.27834 * 308.93143 * 13 12 2 16 16 C 1.81398 * 104.44892 * 65.00241 * 13 12 2 17 17 C 1.53004 * 109.47453 * 179.97438 * 16 13 12 18 18 C 1.52999 * 109.47443 * 180.02562 * 17 16 13 19 19 H 1.09002 * 109.82377 * 305.57088 * 18 17 16 20 20 C 1.54375 * 109.82917 * 184.58605 * 18 17 16 21 21 C 1.55306 * 102.25341 * 219.12636 * 20 18 17 22 22 C 1.54947 * 100.94033 * 34.13837 * 21 20 18 23 23 O 1.43245 * 109.82799 * 66.45298 * 18 17 16 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00849 * 275.00464 * 12 2 1 29 29 H 1.09000 * 109.47405 * 300.00308 * 16 13 12 30 30 H 1.09003 * 109.47320 * 60.00317 * 16 13 12 31 31 H 1.09007 * 109.46608 * 300.00040 * 17 16 13 32 32 H 1.08997 * 109.46812 * 59.99495 * 17 16 13 33 33 H 1.08993 * 110.85274 * 337.32077 * 20 18 17 34 34 H 1.09008 * 110.84707 * 100.94158 * 20 18 17 35 35 H 1.08994 * 111.12891 * 276.22269 * 21 20 18 36 36 H 1.08993 * 111.16144 * 152.06709 * 21 20 18 37 37 H 1.09004 * 110.31341 * 204.63986 * 22 21 20 38 38 H 1.08997 * 110.31249 * 82.46440 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 16 2.4122 0.1771 -2.5505 14 8 2.8122 -0.8077 -3.4936 15 8 1.2751 0.9965 -2.7846 16 6 3.8313 1.1871 -2.0441 17 6 4.2942 2.0443 -3.2239 18 6 5.4916 2.8957 -2.7970 19 1 5.2366 3.4729 -1.9082 20 6 5.8933 3.8472 -3.9444 21 6 7.4442 3.8190 -3.8683 22 6 7.6903 2.3550 -3.4245 23 8 6.6151 2.0508 -2.5218 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9026 -0.5284 4.4375 28 1 2.1109 -1.6562 -1.1949 29 1 3.5400 1.8341 -1.2167 30 1 4.6459 0.5361 -1.7268 31 1 4.5857 1.3968 -4.0510 32 1 3.4798 2.6952 -3.5417 33 1 5.5451 3.4660 -4.9043 34 1 5.5143 4.8533 -3.7647 35 1 7.8138 4.5229 -3.1226 36 1 7.8897 4.0139 -4.8437 37 1 8.6491 2.2708 -2.9128 38 1 7.6607 1.6884 -4.2863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177578686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:48 Heat of formation + Delta-G solvation = -152.855992 kcal Electronic energy + Delta-G solvation = -20358.959706 eV Core-core repulsion = 17134.323888 eV Total energy + Delta-G solvation = -3224.635818 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46713 -38.20213 -37.41577 -36.96083 -34.87475 -34.24336 -33.00796 -30.91646 -29.49978 -27.11383 -25.10816 -22.88233 -22.54308 -21.93188 -20.29288 -19.28975 -18.05890 -17.99752 -17.55717 -17.35272 -16.66235 -16.56461 -15.60281 -15.45692 -15.10274 -14.93787 -14.52034 -14.22855 -13.99481 -13.94140 -13.59386 -13.46703 -13.17809 -13.06288 -12.93877 -12.71064 -12.46576 -12.45803 -12.44121 -12.08548 -11.95524 -11.70344 -11.52316 -11.45382 -11.15807 -10.83694 -10.50260 -10.14880 -8.31334 -6.37764 -0.62696 1.35251 1.38717 1.48511 1.86126 2.31181 2.77923 2.91224 3.03525 3.29274 3.51761 3.66213 3.81202 3.92052 4.00402 4.21801 4.25273 4.35645 4.45910 4.49794 4.60153 4.73656 4.77251 4.82567 4.87989 4.89804 4.94062 5.02319 5.07337 5.23057 5.29235 5.47638 5.49904 6.12213 6.26180 6.30675 6.69652 7.27994 8.84540 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.005319 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.601449 B = 5262.983459 C = 5920.366216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.246 3.754 3 H 0.050 0.950 4 C -0.528 4.528 5 H 0.050 0.950 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.934 3.066 9 H -0.266 1.266 10 H -0.295 1.295 11 H -0.240 1.240 12 N -1.103 6.103 13 S 2.619 3.381 14 O -0.995 6.995 15 O -0.986 6.986 16 C -0.610 4.610 17 C -0.129 4.129 18 C 0.080 3.920 19 H 0.086 0.914 20 C -0.152 4.152 21 C -0.149 4.149 22 C 0.034 3.966 23 O -0.405 6.405 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.268 0.732 28 H 0.415 0.585 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.947 11.857 -15.131 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.139 3.861 3 H 0.068 0.932 4 C -0.568 4.568 5 H 0.069 0.931 6 C -0.177 4.177 7 N -0.579 5.579 8 Si 0.760 3.240 9 H -0.192 1.192 10 H -0.222 1.222 11 H -0.163 1.163 12 N -0.861 5.861 13 S 2.715 3.285 14 O -0.986 6.986 15 O -0.976 6.976 16 C -0.743 4.743 17 C -0.168 4.168 18 C 0.021 3.979 19 H 0.104 0.896 20 C -0.189 4.189 21 C -0.187 4.187 22 C -0.042 4.042 23 O -0.325 6.325 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.249 0.751 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.459 11.818 -15.629 20.966 hybrid contribution 0.041 -0.089 1.176 1.180 sum 7.501 11.729 -14.453 20.068 Atomic orbital electron populations 1.22593 0.98227 1.01999 1.00331 1.18727 0.91284 0.92765 0.83341 0.93225 1.21374 1.31832 1.13541 0.90015 0.93131 1.25705 0.96908 0.99799 0.95311 1.70013 1.46997 1.42197 0.98703 0.86080 0.79503 0.80352 0.78026 1.19175 1.22225 1.16318 1.55301 1.81739 1.19242 1.29776 1.04463 0.76558 0.74642 0.72807 1.93516 1.85078 1.58877 1.61128 1.93529 1.48046 1.71350 1.84689 1.30426 1.19345 1.14689 1.09799 1.21921 1.00230 0.99292 0.95337 1.22829 0.85673 0.90288 0.99097 0.89597 1.23262 0.96358 1.00768 0.98548 1.23262 0.95437 0.96174 1.03790 1.23641 0.90751 0.96277 0.93490 1.88464 1.24759 1.61375 1.57918 0.91901 0.93733 0.92300 0.92257 0.75077 0.84045 0.84264 0.89700 0.87614 0.89244 0.88025 0.89925 0.87843 0.89078 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.26 9.00 71.98 0.65 -6.62 16 2 C 0.25 10.79 2.25 44.25 0.10 10.89 16 3 H 0.05 2.06 6.21 -2.39 -0.01 2.04 16 4 C -0.53 -28.08 9.34 25.60 0.24 -27.84 16 5 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 6 C 0.02 1.21 5.45 84.66 0.46 1.67 16 7 N -0.94 -56.04 13.96 21.45 0.30 -55.74 16 8 Si 0.93 41.96 24.37 68.60 1.67 43.63 16 9 H -0.27 -11.52 6.87 99.48 0.68 -10.84 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.24 -9.73 6.53 99.48 0.65 -9.08 16 12 N -1.10 -42.21 5.35 -172.53 -0.92 -43.13 16 13 S 2.62 88.00 5.38 -56.49 -0.30 87.70 16 14 O -1.00 -37.37 18.08 -127.65 -2.31 -39.68 16 15 O -0.99 -36.98 17.11 -127.65 -2.18 -39.17 16 16 C -0.61 -16.92 5.87 71.98 0.42 -16.50 16 17 C -0.13 -2.90 4.79 30.60 0.15 -2.75 16 18 C 0.08 1.65 3.52 31.06 0.11 1.76 16 19 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 20 C -0.15 -2.06 6.54 31.85 0.21 -1.86 16 21 C -0.15 -1.81 7.16 32.05 0.23 -1.58 16 22 C 0.03 0.60 7.78 72.65 0.56 1.16 16 23 O -0.40 -10.15 10.63 -148.98 -1.58 -11.73 16 24 H 0.06 2.44 7.42 -2.39 -0.02 2.43 16 25 H 0.04 1.87 3.27 -2.39 -0.01 1.87 16 26 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 27 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 28 H 0.42 15.40 8.79 -96.75 -0.85 14.55 16 29 H 0.14 3.74 7.44 -2.39 -0.02 3.72 16 30 H 0.14 3.97 7.88 -2.39 -0.02 3.96 16 31 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 1.06 7.85 -2.39 -0.02 1.04 16 34 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -70.29 315.59 -2.08 -72.37 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.12 Total: 27.42 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 3.13 Total: -41.67 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -0.62 Total: -98.87 kcal Atomic # 8 Polarization: -84.50 SS G_CDS: -6.08 Total: -90.57 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.67 Total: 43.63 kcal Atomic # 16 Polarization: 88.00 SS G_CDS: -0.30 Total: 87.70 kcal Total: -70.29 -2.08 -72.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177578686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.486 kcal (2) G-P(sol) polarization free energy of solvation -70.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds