Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46606 * 2 1 4 4 C 1.50702 * 109.46914 * 119.99378 * 2 1 3 5 5 H 1.07998 * 119.99762 * 94.62971 * 4 2 1 6 6 C 1.37881 * 120.00242 * 274.62748 * 4 2 1 7 7 N 1.31514 * 119.99937 * 6.45324 * 6 4 2 8 8 Si 1.86795 * 120.00191 * 186.45127 * 6 4 2 9 9 H 1.48492 * 109.47377 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47082 * 300.00544 * 8 6 4 11 11 H 1.48501 * 109.47023 * 59.99776 * 8 6 4 12 12 N 1.46495 * 109.47651 * 239.99757 * 2 1 3 13 13 S 1.65594 * 120.00124 * 94.99664 * 12 2 1 14 14 O 1.42102 * 104.28135 * 181.07441 * 13 12 2 15 15 O 1.42103 * 104.28008 * 308.93328 * 13 12 2 16 16 C 1.81401 * 104.44814 * 65.00186 * 13 12 2 17 17 C 1.53005 * 109.47057 * 179.97438 * 16 13 12 18 18 C 1.53001 * 109.47042 * 180.02562 * 17 16 13 19 19 H 1.09004 * 110.27693 * 54.29824 * 18 17 16 20 20 C 1.54946 * 110.31221 * 176.38984 * 18 17 16 21 21 C 1.55414 * 100.89643 * 155.28449 * 20 18 17 22 22 C 1.54387 * 102.30862 * 325.99270 * 21 20 18 23 23 O 1.43237 * 107.58721 * 21.28381 * 22 21 20 24 24 H 1.08991 * 109.47102 * 294.95797 * 1 2 3 25 25 H 1.09002 * 109.46619 * 54.95786 * 1 2 3 26 26 H 1.09000 * 109.47039 * 174.95401 * 1 2 3 27 27 H 0.97003 * 120.00192 * 355.07918 * 7 6 4 28 28 H 0.96999 * 119.99933 * 275.00553 * 12 2 1 29 29 H 1.09000 * 109.47486 * 299.99711 * 16 13 12 30 30 H 1.09001 * 109.47227 * 60.00520 * 16 13 12 31 31 H 1.08997 * 109.47140 * 299.99819 * 17 16 13 32 32 H 1.08994 * 109.47439 * 60.00176 * 17 16 13 33 33 H 1.08997 * 111.12448 * 273.27908 * 20 18 17 34 34 H 1.09005 * 111.12043 * 37.43612 * 20 18 17 35 35 H 1.09003 * 110.88483 * 207.75586 * 21 20 18 36 36 H 1.09003 * 110.93100 * 84.25430 * 21 20 18 37 37 H 1.08998 * 109.83004 * 261.77163 * 22 21 20 38 38 H 1.09000 * 109.90267 * 140.83658 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.2835 -1.7596 1.1836 6 6 2.1713 -0.0205 2.4163 7 7 1.7476 1.2211 2.5083 8 14 2.9613 -0.8495 3.8921 9 1 2.9912 0.0980 5.0350 10 1 2.1725 -2.0508 4.2661 11 1 4.3479 -1.2552 3.5484 12 7 2.0185 -0.6906 -1.1961 13 16 2.4123 0.1771 -2.5504 14 8 2.8124 -0.8077 -3.4935 15 8 1.2752 0.9965 -2.7846 16 6 3.8313 1.1872 -2.0439 17 6 4.2942 2.0443 -3.2238 18 6 5.4915 2.8959 -2.7969 19 1 6.2764 2.2632 -2.3823 20 6 6.0334 3.7048 -4.0022 21 6 6.7197 4.8936 -3.2735 22 6 5.8046 5.1007 -2.0475 23 8 5.0846 3.8810 -1.8339 24 1 -0.3633 0.4336 0.9316 25 1 -0.3632 0.5901 -0.8414 26 1 -0.3633 -1.0237 -0.0904 27 1 1.4028 1.6754 1.7236 28 1 2.1111 -1.6562 -1.1947 29 1 3.5400 1.8343 -1.2166 30 1 4.6460 0.5363 -1.7266 31 1 4.5858 1.3970 -4.0509 32 1 3.4799 2.6953 -3.5416 33 1 6.7561 3.1221 -4.5733 34 1 5.2202 4.0523 -4.6395 35 1 6.7301 5.7824 -3.9044 36 1 7.7304 4.6288 -2.9629 37 1 5.1051 5.9139 -2.2414 38 1 6.4073 5.3330 -1.1695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177578719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = -140.711991 kcal Electronic energy + Delta-G solvation = -20416.657219 eV Core-core repulsion = 17192.548005 eV Total energy + Delta-G solvation = -3224.109215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56333 -36.60580 -35.67019 -35.37768 -33.89466 -32.22899 -32.19767 -28.58174 -28.33700 -24.82783 -24.05854 -21.79407 -21.17785 -21.09624 -18.69675 -17.66729 -17.05973 -16.87253 -16.14913 -15.50358 -15.46958 -14.88501 -14.22850 -13.91225 -13.73084 -13.46822 -13.23945 -13.18029 -12.36140 -12.18550 -11.95363 -11.79570 -11.67784 -11.61288 -11.49848 -11.47319 -11.27069 -11.07554 -11.01109 -10.80360 -10.70590 -10.36305 -10.19884 -10.11565 -9.56376 -8.88358 -8.65950 -8.15328 -6.50277 -4.23595 0.84540 3.36054 3.38771 3.44493 3.58460 3.67845 4.19630 4.27970 4.44044 4.54213 4.68777 4.71207 4.84273 4.99280 5.02122 5.16606 5.24746 5.34869 5.46475 5.53482 5.55893 5.64384 5.73680 5.82379 6.00093 6.11856 6.18993 6.48815 6.80130 6.83582 6.98411 7.28806 7.37094 7.75800 8.11718 8.32258 8.69729 9.46966 10.87898 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.005933 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.434539 B = 4718.416159 C = 5896.407276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.256 3.744 3 H 0.040 0.960 4 C -0.602 4.602 5 H 0.058 0.942 6 C 0.024 3.976 7 N -0.902 5.902 8 Si 1.070 2.930 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.287 1.287 12 N -1.099 6.099 13 S 2.605 3.395 14 O -0.984 6.984 15 O -0.964 6.964 16 C -0.627 4.627 17 C -0.109 4.109 18 C 0.088 3.912 19 H 0.076 0.924 20 C -0.155 4.155 21 C -0.156 4.156 22 C 0.049 3.951 23 O -0.372 6.372 24 H 0.057 0.943 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.272 0.728 28 H 0.408 0.592 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.568 5.013 -10.594 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.151 3.849 3 H 0.058 0.942 4 C -0.642 4.642 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.537 5.537 8 Si 0.898 3.102 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.214 1.214 12 N -0.859 5.859 13 S 2.697 3.303 14 O -0.974 6.974 15 O -0.954 6.954 16 C -0.756 4.756 17 C -0.148 4.148 18 C 0.030 3.970 19 H 0.094 0.906 20 C -0.193 4.193 21 C -0.193 4.193 22 C -0.028 4.028 23 O -0.292 6.292 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.241 0.759 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.316 5.377 -9.669 14.463 hybrid contribution 0.373 -0.359 -1.134 1.247 sum 9.689 5.018 -10.803 15.354 Atomic orbital electron populations 1.22294 0.98778 1.00142 1.00185 1.18661 0.90874 0.92449 0.82877 0.94206 1.22077 1.48654 0.98082 0.95431 0.92361 1.25860 0.95006 0.96164 1.01217 1.70814 1.37963 1.12264 1.32667 0.83515 0.76090 0.75176 0.75405 1.20686 1.21328 1.21376 1.55647 1.81039 1.18446 1.30757 1.04943 0.76395 0.75057 0.73868 1.93521 1.84882 1.57821 1.61184 1.93567 1.46003 1.71320 1.84546 1.30588 1.21457 1.14494 1.09022 1.21459 0.99320 0.98104 0.95888 1.22919 0.95514 0.90481 0.88086 0.90603 1.23379 1.00982 0.96836 0.98117 1.23134 0.99772 0.99208 0.97228 1.23128 0.94408 0.87962 0.97322 1.88516 1.64275 1.21894 1.54488 0.92412 0.94563 0.93943 0.91649 0.75883 0.84130 0.85122 0.89441 0.89751 0.89653 0.89983 0.90061 0.90536 0.91309 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.38 37.16 0.35 -3.27 16 2 C 0.26 6.14 2.29 -69.08 -0.16 5.98 16 3 H 0.04 1.00 5.97 -51.93 -0.31 0.69 16 4 C -0.60 -15.73 8.55 -34.44 -0.29 -16.02 16 5 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 6 C 0.02 0.64 5.45 -17.82 -0.10 0.54 16 7 N -0.90 -25.77 13.63 55.43 0.76 -25.02 16 8 Si 1.07 23.92 29.91 -169.99 -5.08 18.83 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 12 N -1.10 -22.48 5.35 -5.88 -0.03 -22.51 16 13 S 2.60 48.31 5.38 -107.50 -0.58 47.74 16 14 O -0.98 -19.37 18.08 -57.54 -1.04 -20.41 16 15 O -0.96 -20.68 17.20 -57.54 -0.99 -21.67 16 16 C -0.63 -10.02 5.88 37.16 0.22 -9.80 16 17 C -0.11 -1.47 4.96 -26.73 -0.13 -1.60 16 18 C 0.09 1.10 3.41 -25.70 -0.09 1.01 16 19 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 20 C -0.16 -1.43 6.58 -24.42 -0.16 -1.59 16 21 C -0.16 -1.31 7.02 -24.72 -0.17 -1.48 16 22 C 0.05 0.53 7.80 37.88 0.30 0.83 16 23 O -0.37 -5.57 10.75 -35.23 -0.38 -5.95 16 24 H 0.06 1.41 7.83 -51.93 -0.41 1.00 16 25 H 0.04 0.81 7.52 -51.93 -0.39 0.42 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.27 7.73 6.39 -40.82 -0.26 7.47 16 28 H 0.41 7.76 8.79 -34.46 -0.30 7.46 16 29 H 0.14 2.50 7.25 -51.92 -0.38 2.12 16 30 H 0.13 1.88 8.14 -51.92 -0.42 1.46 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -33.06 323.98 -8.61 -41.67 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.90 Total: 7.83 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -0.24 Total: -25.39 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.72 Total: -47.53 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -2.41 Total: -48.03 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.08 Total: 18.83 kcal Atomic # 16 Polarization: 48.31 SS G_CDS: -0.58 Total: 47.74 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.06 -8.61 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177578719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.043 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds