Wall clock time and date at job start Mon Mar 30 2020 01:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46606 * 2 1 4 4 C 1.50702 * 109.46914 * 119.99378 * 2 1 3 5 5 H 1.07998 * 119.99762 * 94.62971 * 4 2 1 6 6 C 1.37881 * 120.00242 * 274.62748 * 4 2 1 7 7 N 1.31514 * 119.99937 * 6.45324 * 6 4 2 8 8 Si 1.86795 * 120.00191 * 186.45127 * 6 4 2 9 9 H 1.48492 * 109.47377 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47082 * 300.00544 * 8 6 4 11 11 H 1.48501 * 109.47023 * 59.99776 * 8 6 4 12 12 N 1.46495 * 109.47651 * 239.99757 * 2 1 3 13 13 S 1.65594 * 120.00124 * 94.99664 * 12 2 1 14 14 O 1.42102 * 104.28135 * 181.07441 * 13 12 2 15 15 O 1.42103 * 104.28008 * 308.93328 * 13 12 2 16 16 C 1.81401 * 104.44814 * 65.00186 * 13 12 2 17 17 C 1.53005 * 109.47057 * 179.97438 * 16 13 12 18 18 C 1.53001 * 109.47042 * 180.02562 * 17 16 13 19 19 H 1.09004 * 110.27693 * 54.29824 * 18 17 16 20 20 C 1.54946 * 110.31221 * 176.38984 * 18 17 16 21 21 C 1.55414 * 100.89643 * 155.28449 * 20 18 17 22 22 C 1.54387 * 102.30862 * 325.99270 * 21 20 18 23 23 O 1.43237 * 107.58721 * 21.28381 * 22 21 20 24 24 H 1.08991 * 109.47102 * 294.95797 * 1 2 3 25 25 H 1.09002 * 109.46619 * 54.95786 * 1 2 3 26 26 H 1.09000 * 109.47039 * 174.95401 * 1 2 3 27 27 H 0.97003 * 120.00192 * 355.07918 * 7 6 4 28 28 H 0.96999 * 119.99933 * 275.00553 * 12 2 1 29 29 H 1.09000 * 109.47486 * 299.99711 * 16 13 12 30 30 H 1.09001 * 109.47227 * 60.00520 * 16 13 12 31 31 H 1.08997 * 109.47140 * 299.99819 * 17 16 13 32 32 H 1.08994 * 109.47439 * 60.00176 * 17 16 13 33 33 H 1.08997 * 111.12448 * 273.27908 * 20 18 17 34 34 H 1.09005 * 111.12043 * 37.43612 * 20 18 17 35 35 H 1.09003 * 110.88483 * 207.75586 * 21 20 18 36 36 H 1.09003 * 110.93100 * 84.25430 * 21 20 18 37 37 H 1.08998 * 109.83004 * 261.77163 * 22 21 20 38 38 H 1.09000 * 109.90267 * 140.83658 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.2835 -1.7596 1.1836 6 6 2.1713 -0.0205 2.4163 7 7 1.7476 1.2211 2.5083 8 14 2.9613 -0.8495 3.8921 9 1 2.9912 0.0980 5.0350 10 1 2.1725 -2.0508 4.2661 11 1 4.3479 -1.2552 3.5484 12 7 2.0185 -0.6906 -1.1961 13 16 2.4123 0.1771 -2.5504 14 8 2.8124 -0.8077 -3.4935 15 8 1.2752 0.9965 -2.7846 16 6 3.8313 1.1872 -2.0439 17 6 4.2942 2.0443 -3.2238 18 6 5.4915 2.8959 -2.7969 19 1 6.2764 2.2632 -2.3823 20 6 6.0334 3.7048 -4.0022 21 6 6.7197 4.8936 -3.2735 22 6 5.8046 5.1007 -2.0475 23 8 5.0846 3.8810 -1.8339 24 1 -0.3633 0.4336 0.9316 25 1 -0.3632 0.5901 -0.8414 26 1 -0.3633 -1.0237 -0.0904 27 1 1.4028 1.6754 1.7236 28 1 2.1111 -1.6562 -1.1947 29 1 3.5400 1.8343 -1.2166 30 1 4.6460 0.5363 -1.7266 31 1 4.5858 1.3970 -4.0509 32 1 3.4799 2.6953 -3.5416 33 1 6.7561 3.1221 -4.5733 34 1 5.2202 4.0523 -4.6395 35 1 6.7301 5.7824 -3.9044 36 1 7.7304 4.6288 -2.9629 37 1 5.1051 5.9139 -2.2414 38 1 6.4073 5.3330 -1.1695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177578719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:51 Heat of formation + Delta-G solvation = -165.457979 kcal Electronic energy + Delta-G solvation = -20417.730286 eV Core-core repulsion = 17192.548005 eV Total energy + Delta-G solvation = -3225.182281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45988 -38.24068 -37.50240 -37.01482 -35.01080 -34.14476 -33.04067 -30.21467 -29.55489 -26.88261 -25.10898 -23.09861 -22.53722 -22.06970 -20.27777 -19.48955 -18.52100 -17.97580 -17.44906 -17.00880 -16.62049 -16.07575 -15.70682 -15.52449 -15.20491 -15.00215 -14.49628 -14.12421 -14.00652 -13.67716 -13.44466 -13.24181 -13.20253 -13.11135 -12.76586 -12.58957 -12.58771 -12.54676 -12.51635 -12.23650 -12.02188 -11.91572 -11.70499 -11.48893 -10.75905 -10.63895 -10.50848 -10.02028 -8.62294 -6.36505 -0.66741 1.58703 1.64267 1.83328 1.85680 2.58901 2.74533 2.82292 3.19822 3.24475 3.48470 3.55402 3.82831 3.86988 3.97918 4.14962 4.24595 4.30818 4.39355 4.57065 4.61961 4.65352 4.78395 4.84857 4.86497 4.89744 4.91405 4.97809 5.03301 5.24161 5.37250 5.44004 5.87166 6.10159 6.20012 6.37832 6.57692 7.42387 8.76206 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.005933 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.434539 B = 4718.416159 C = 5896.407276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.257 3.743 3 H 0.026 0.974 4 C -0.608 4.608 5 H 0.062 0.938 6 C -0.023 4.023 7 N -0.930 5.930 8 Si 1.114 2.886 9 H -0.288 1.288 10 H -0.272 1.272 11 H -0.269 1.269 12 N -1.103 6.103 13 S 2.618 3.382 14 O -0.990 6.990 15 O -0.996 6.996 16 C -0.609 4.609 17 C -0.117 4.117 18 C 0.079 3.921 19 H 0.082 0.918 20 C -0.150 4.150 21 C -0.147 4.147 22 C 0.035 3.965 23 O -0.412 6.412 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.051 0.949 27 H 0.260 0.740 28 H 0.414 0.586 29 H 0.121 0.879 30 H 0.150 0.850 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.484 4.564 -11.516 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.151 3.849 3 H 0.044 0.956 4 C -0.648 4.648 5 H 0.080 0.920 6 C -0.223 4.223 7 N -0.567 5.567 8 Si 0.936 3.064 9 H -0.214 1.214 10 H -0.197 1.197 11 H -0.194 1.194 12 N -0.861 5.861 13 S 2.715 3.285 14 O -0.981 6.981 15 O -0.987 6.987 16 C -0.741 4.741 17 C -0.156 4.156 18 C 0.021 3.979 19 H 0.099 0.901 20 C -0.188 4.188 21 C -0.184 4.184 22 C -0.041 4.041 23 O -0.333 6.333 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.248 0.752 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.200 4.887 -10.619 16.189 hybrid contribution -0.211 -0.198 -0.923 0.967 sum 10.990 4.689 -11.542 16.613 Atomic orbital electron populations 1.22221 0.98725 1.00564 0.99384 1.18447 0.90966 0.91895 0.83607 0.95628 1.22368 1.47893 0.98352 0.96180 0.91974 1.27177 0.94923 0.96041 1.04204 1.70926 1.40059 1.13454 1.32284 0.82951 0.76398 0.74655 0.72352 1.21406 1.19708 1.19449 1.55450 1.81703 1.18996 1.30000 1.04449 0.76501 0.74570 0.73012 1.93508 1.85030 1.58429 1.61123 1.93523 1.48531 1.71726 1.84893 1.30400 1.20029 1.14081 1.09548 1.21676 1.00035 0.98412 0.95461 1.23092 0.94933 0.90563 0.89341 0.90060 1.23403 1.01609 0.96788 0.96988 1.23129 0.99478 0.99797 0.96007 1.23354 0.94968 0.86813 0.98943 1.88476 1.65499 1.23524 1.55806 0.94078 0.94290 0.93005 0.92921 0.75166 0.86055 0.83214 0.86718 0.90083 0.87243 0.89663 0.88016 0.89392 0.91100 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.10 9.38 71.98 0.68 -6.43 16 2 C 0.26 12.43 2.29 44.25 0.10 12.53 16 3 H 0.03 1.33 5.97 -2.39 -0.01 1.31 16 4 C -0.61 -31.63 8.55 25.60 0.22 -31.41 16 5 H 0.06 3.12 7.82 -2.91 -0.02 3.10 16 6 C -0.02 -1.26 5.45 84.66 0.46 -0.80 16 7 N -0.93 -54.09 13.63 21.45 0.29 -53.80 16 8 Si 1.11 47.48 29.91 68.60 2.05 49.53 16 9 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 12 N -1.10 -44.75 5.35 -172.52 -0.92 -45.68 16 13 S 2.62 95.78 5.38 -56.49 -0.30 95.48 16 14 O -0.99 -37.61 18.08 -127.65 -2.31 -39.92 16 15 O -1.00 -42.99 17.20 -127.65 -2.20 -45.18 16 16 C -0.61 -18.97 5.88 71.98 0.42 -18.55 16 17 C -0.12 -2.97 4.96 30.60 0.15 -2.82 16 18 C 0.08 1.83 3.41 31.26 0.11 1.94 16 19 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 20 C -0.15 -2.32 6.58 32.09 0.21 -2.11 16 21 C -0.15 -2.06 7.02 31.90 0.22 -1.84 16 22 C 0.04 0.74 7.80 72.45 0.56 1.31 16 23 O -0.41 -12.19 10.75 -148.98 -1.60 -13.79 16 24 H 0.04 2.05 7.83 -2.39 -0.02 2.03 16 25 H 0.04 1.78 7.52 -2.39 -0.02 1.77 16 26 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.26 15.30 6.39 -92.71 -0.59 14.71 16 28 H 0.41 15.46 8.79 -96.75 -0.85 14.61 16 29 H 0.12 4.39 7.25 -2.39 -0.02 4.37 16 30 H 0.15 4.07 8.14 -2.39 -0.02 4.05 16 31 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.27 8.06 -2.38 -0.02 1.25 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -70.45 323.98 -1.48 -71.93 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.37 Total: 29.61 kcal Atomic # 6 Polarization: -51.32 SS G_CDS: 3.14 Total: -48.18 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -0.63 Total: -99.48 kcal Atomic # 8 Polarization: -92.79 SS G_CDS: -6.10 Total: -98.89 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.05 Total: 49.53 kcal Atomic # 16 Polarization: 95.78 SS G_CDS: -0.30 Total: 95.48 kcal Total: -70.45 -1.48 -71.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177578719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.530 kcal (2) G-P(sol) polarization free energy of solvation -70.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds