Wall clock time and date at job start Mon Mar 30 2020 01:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47259 * 2 1 4 4 C 1.50702 * 109.46649 * 240.00369 * 2 1 3 5 5 H 1.08004 * 119.99934 * 239.99502 * 4 2 1 6 6 C 1.37871 * 120.00104 * 60.00167 * 4 2 1 7 7 N 1.31522 * 120.00125 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00200 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47126 * 59.99950 * 8 6 4 10 10 H 1.48499 * 109.47626 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47390 * 300.00088 * 8 6 4 12 12 N 1.46498 * 109.47034 * 120.00613 * 2 1 3 13 13 S 1.65602 * 119.99612 * 264.71801 * 12 2 1 14 14 O 1.42109 * 104.27511 * 181.34803 * 13 12 2 15 15 O 1.42098 * 104.28120 * 309.20801 * 13 12 2 16 16 C 1.81394 * 104.44973 * 65.28269 * 13 12 2 17 17 C 1.53003 * 109.47387 * 179.97438 * 16 13 12 18 18 C 1.53002 * 109.47130 * 179.97438 * 17 16 13 19 19 H 1.09006 * 110.27691 * 54.29495 * 18 17 16 20 20 C 1.54943 * 110.31048 * 176.38650 * 18 17 16 21 21 C 1.55413 * 100.89389 * 155.28567 * 20 18 17 22 22 C 1.54381 * 102.31167 * 325.99319 * 21 20 18 23 23 O 1.43246 * 107.58728 * 21.28338 * 22 21 20 24 24 H 1.08994 * 109.47476 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46713 * 299.99498 * 1 2 3 26 26 H 1.08999 * 109.47174 * 59.98917 * 1 2 3 27 27 H 0.96995 * 120.00356 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00384 * 85.00279 * 12 2 1 29 29 H 1.09009 * 109.47044 * 299.99503 * 16 13 12 30 30 H 1.09001 * 109.47747 * 59.99183 * 16 13 12 31 31 H 1.09000 * 109.46375 * 299.99213 * 17 16 13 32 32 H 1.08993 * 109.47045 * 59.99537 * 17 16 13 33 33 H 1.08998 * 111.12747 * 273.28213 * 20 18 17 34 34 H 1.09003 * 111.12622 * 37.43932 * 20 18 17 35 35 H 1.09000 * 110.88094 * 207.75412 * 21 20 18 36 36 H 1.09001 * 110.93219 * 84.25565 * 21 20 18 37 37 H 1.09001 * 109.82781 * 261.77276 * 22 21 20 38 38 H 1.08992 * 109.90468 * 140.83731 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4827 7 7 0.9435 0.8305 -2.6033 8 14 2.3222 -1.1193 -4.0080 9 1 1.8277 -2.5195 -4.0083 10 1 1.8276 -0.4189 -5.2205 11 1 3.8072 -1.1188 -4.0079 12 7 2.0183 -0.6907 1.1961 13 16 2.4187 0.1776 2.5481 14 8 2.8716 -0.8022 3.4725 15 8 3.2917 1.1909 2.0681 16 6 0.8500 0.8995 3.1035 17 6 1.0905 1.7352 4.3624 18 6 -0.2326 2.3446 4.8304 19 1 -0.9827 1.5644 4.9608 20 6 -0.0282 3.1209 6.1557 21 6 -1.2080 4.1304 6.0897 22 6 -1.3129 4.4156 4.5760 23 8 -0.6918 3.3247 3.8860 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 0.7088 1.1617 -3.4842 28 1 2.1110 -1.6563 1.1947 29 1 0.4441 1.5356 2.3168 30 1 0.1418 0.1017 3.3272 31 1 1.4960 1.0987 5.1488 32 1 1.7987 2.5330 4.1391 33 1 -0.1227 2.4596 7.0169 34 1 0.9310 3.6387 6.1637 35 1 -0.9715 5.0408 6.6404 36 1 -2.1272 3.6802 6.4643 37 1 -0.7965 5.3456 4.3383 38 1 -2.3605 4.4893 4.2841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177578737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:53 Heat of formation + Delta-G solvation = -159.280542 kcal Electronic energy + Delta-G solvation = -20296.751927 eV Core-core repulsion = 17071.837519 eV Total energy + Delta-G solvation = -3224.914407 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40648 -38.12554 -37.25918 -36.93618 -34.95953 -34.10965 -32.99391 -30.10836 -29.48644 -27.25777 -25.03356 -22.81121 -22.49238 -21.96168 -20.21329 -19.16005 -18.10075 -17.92604 -17.25887 -17.16058 -16.65302 -16.47847 -15.83486 -15.35808 -15.10457 -14.54196 -14.42728 -14.04826 -13.97501 -13.56381 -13.43383 -13.15068 -13.04742 -12.95665 -12.80766 -12.68658 -12.52425 -12.47856 -12.38840 -12.18776 -11.97707 -11.95388 -11.66400 -11.35653 -11.09484 -10.57362 -10.45278 -10.01015 -8.13969 -6.27970 -0.59160 1.44869 1.46814 1.54051 1.94859 2.44613 2.84080 2.88265 3.15511 3.34587 3.54267 3.60079 3.90246 3.94335 4.02547 4.20748 4.33147 4.44546 4.53634 4.66543 4.70113 4.81086 4.88288 4.93427 4.93581 5.02597 5.04203 5.08354 5.18715 5.28441 5.58880 5.78671 6.06689 6.14539 6.15740 6.44552 6.82550 7.41268 8.91170 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.004655 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.284963 B = 6013.050698 C = 6805.115072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.268 3.732 3 H 0.019 0.981 4 C -0.545 4.545 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.962 3.038 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.277 1.277 12 N -1.107 6.107 13 S 2.613 3.387 14 O -0.994 6.994 15 O -1.006 7.006 16 C -0.605 4.605 17 C -0.119 4.119 18 C 0.082 3.918 19 H 0.087 0.913 20 C -0.153 4.153 21 C -0.148 4.148 22 C 0.037 3.963 23 O -0.410 6.410 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.266 0.734 28 H 0.414 0.586 29 H 0.132 0.868 30 H 0.159 0.841 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.765 4.021 17.636 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.036 0.964 4 C -0.584 4.584 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.552 5.552 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.203 1.203 12 N -0.865 5.865 13 S 2.710 3.290 14 O -0.984 6.984 15 O -0.997 6.997 16 C -0.738 4.738 17 C -0.158 4.158 18 C 0.024 3.976 19 H 0.105 0.895 20 C -0.190 4.190 21 C -0.185 4.185 22 C -0.040 4.040 23 O -0.330 6.330 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.248 0.752 29 H 0.151 0.849 30 H 0.177 0.823 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.944 4.391 17.619 19.106 hybrid contribution -0.294 -0.502 -1.190 1.324 sum -6.237 3.890 16.429 17.998 Atomic orbital electron populations 1.22207 0.97182 1.00577 1.01240 1.18333 0.91686 0.91606 0.82170 0.96369 1.21580 1.32092 1.13388 0.91345 0.92001 1.25687 0.95094 0.95727 1.01857 1.69975 1.37042 1.23607 1.24595 0.85551 0.78482 0.78875 0.78343 1.19150 1.20697 1.20267 1.55356 1.84158 1.19346 1.27667 1.04530 0.77707 0.73822 0.72969 1.93501 1.81135 1.59421 1.64361 1.93524 1.63995 1.62255 1.79876 1.30506 1.21784 1.12578 1.08925 1.21684 0.99365 0.99540 0.95220 1.23075 0.94365 0.91774 0.88426 0.89475 1.23409 0.99839 0.98507 0.97282 1.23127 0.99374 1.00867 0.95136 1.23335 0.98087 0.89874 0.92668 1.88464 1.78071 1.32770 1.33705 0.93783 0.93708 0.91347 0.92507 0.75243 0.84943 0.82288 0.86899 0.90462 0.87351 0.89990 0.88360 0.89282 0.91342 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.83 9.27 71.98 0.67 -6.16 16 2 C 0.27 13.22 2.80 44.25 0.12 13.35 16 3 H 0.02 1.03 7.47 -2.39 -0.02 1.01 16 4 C -0.54 -29.64 8.76 25.60 0.22 -29.42 16 5 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.91 -51.47 11.32 21.45 0.24 -51.23 16 8 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 N -1.11 -45.34 5.35 -172.52 -0.92 -46.27 16 13 S 2.61 96.36 5.44 -56.49 -0.31 96.05 16 14 O -0.99 -38.02 18.08 -127.65 -2.31 -40.32 16 15 O -1.01 -46.45 17.38 -127.65 -2.22 -48.66 16 16 C -0.61 -16.97 5.18 71.98 0.37 -16.60 16 17 C -0.12 -2.80 4.96 30.60 0.15 -2.64 16 18 C 0.08 1.68 3.41 31.26 0.11 1.78 16 19 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 20 C -0.15 -2.14 6.58 32.09 0.21 -1.93 16 21 C -0.15 -1.83 7.02 31.89 0.22 -1.61 16 22 C 0.04 0.68 7.80 72.45 0.56 1.25 16 23 O -0.41 -10.80 10.75 -148.98 -1.60 -12.40 16 24 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 1.67 5.82 -2.39 -0.01 1.66 16 26 H 0.07 3.45 6.07 -2.39 -0.01 3.44 16 27 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.41 15.56 8.79 -96.74 -0.85 14.71 16 29 H 0.13 4.17 6.59 -2.39 -0.02 4.15 16 30 H 0.16 3.50 8.14 -2.39 -0.02 3.48 16 31 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.16 8.06 -2.39 -0.02 1.14 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -71.71 320.58 -1.79 -73.50 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.20 Total: 24.78 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 3.09 Total: -40.62 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -0.68 Total: -97.50 kcal Atomic # 8 Polarization: -95.26 SS G_CDS: -6.13 Total: -101.39 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 96.36 SS G_CDS: -0.31 Total: 96.05 kcal Total: -71.71 -1.79 -73.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177578737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.782 kcal (2) G-P(sol) polarization free energy of solvation -71.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds