Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99812 * 2 1 4 4 O 1.20821 * 120.00059 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99565 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47517 * 300.00002 * 5 3 2 7 7 C 1.52998 * 109.47314 * 60.00046 * 5 3 2 8 8 N 1.46502 * 109.47077 * 179.97438 * 5 3 2 9 9 C 1.34779 * 119.99976 * 154.99748 * 8 5 3 10 10 O 1.21550 * 119.99871 * 0.02562 * 9 8 5 11 11 C 1.47887 * 119.99871 * 179.72552 * 9 8 5 12 12 C 1.39915 * 120.02585 * 0.02562 * 11 9 8 13 13 C 1.38333 * 120.35717 * 179.69549 * 12 11 9 14 14 C 1.37741 * 120.41036 * 0.60148 * 13 12 11 15 15 C 1.40751 * 120.04290 * 359.67518 * 14 13 12 16 16 C 1.41440 * 120.18119 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00094 * 150.17829 * 16 15 14 18 18 C 1.39935 * 119.99872 * 330.18118 * 16 15 14 19 19 N 1.30823 * 119.99799 * 161.73257 * 18 16 15 20 20 Si 1.86799 * 120.00019 * 341.72557 * 18 16 15 21 21 H 1.48504 * 109.47116 * 95.41618 * 20 18 16 22 22 H 1.48499 * 109.47507 * 215.41889 * 20 18 16 23 23 H 1.48500 * 109.47191 * 335.41768 * 20 18 16 24 24 C 1.38993 * 120.02429 * 180.27458 * 11 9 8 25 25 H 1.08997 * 109.47138 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47110 * 300.00107 * 1 2 3 27 27 H 1.08998 * 109.46874 * 59.99949 * 1 2 3 28 28 H 1.09009 * 109.47164 * 299.99836 * 7 5 3 29 29 H 1.09001 * 109.47304 * 59.99809 * 7 5 3 30 30 H 1.09000 * 109.47596 * 179.97438 * 7 5 3 31 31 H 0.96995 * 119.99821 * 335.00563 * 8 5 3 32 32 H 1.08006 * 119.82098 * 359.97438 * 12 11 9 33 33 H 1.08000 * 119.79089 * 180.30369 * 13 12 11 34 34 H 1.08003 * 119.97975 * 179.70344 * 14 13 12 35 35 H 0.97005 * 119.99646 * 179.97438 * 19 18 16 36 36 H 1.08002 * 120.20274 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1139 0.5810 -1.2483 8 7 3.9818 2.6797 -0.0002 9 6 5.1871 3.0263 0.4935 10 8 5.9296 2.1731 0.9388 11 6 5.6089 4.4437 0.4872 12 6 4.7570 5.4254 -0.0306 13 6 5.1420 6.7540 -0.0342 14 6 6.3730 7.1246 0.4604 15 6 7.2459 6.1504 0.9801 16 6 8.5104 6.5276 1.4891 17 1 8.9664 5.9536 2.2822 18 6 9.1706 7.6447 0.9653 19 7 10.1381 8.2092 1.6411 20 14 8.6707 8.3296 -0.6992 21 1 7.7067 9.4428 -0.5071 22 1 9.8738 8.8335 -1.4088 23 1 8.0339 7.2569 -1.5049 24 6 6.8541 4.8010 0.9908 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.8048 -0.4644 -1.2482 29 1 3.7245 1.0749 -2.1385 30 1 5.2024 0.6383 -1.2481 31 1 3.3893 3.3604 -0.3558 32 1 3.7916 5.1449 -0.4256 33 1 4.4751 7.5049 -0.4316 34 1 6.6685 8.1633 0.4498 35 1 10.5960 8.9834 1.2778 36 1 7.5164 4.0461 1.3882 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177867191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -104.723266 kcal Electronic energy + Delta-G solvation = -20723.140805 eV Core-core repulsion = 17365.148227 eV Total energy + Delta-G solvation = -3357.992578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.95081 -39.44717 -37.46021 -36.80684 -35.01533 -33.72223 -31.59461 -30.26308 -29.75811 -28.00216 -25.38145 -24.80612 -23.03567 -21.03245 -20.66953 -20.08172 -18.52003 -17.55047 -16.99551 -16.75895 -16.18981 -15.79278 -15.21211 -14.69178 -14.68571 -14.04959 -13.84475 -13.65856 -13.50866 -12.89417 -12.76307 -12.75463 -12.51899 -12.30986 -12.07925 -11.75916 -11.62107 -11.12095 -11.06955 -10.80547 -10.65373 -10.55406 -10.03022 -9.75079 -9.51474 -9.20048 -9.10926 -7.89934 -7.78004 -7.01665 -4.56582 1.83731 1.88634 2.23000 2.50458 3.05014 3.16800 3.24901 3.39830 3.54390 3.92265 4.37766 4.45692 4.79253 4.83717 4.87407 4.94886 5.19818 5.28780 5.33691 5.51492 5.64531 5.86940 5.94593 6.03031 6.05442 6.36431 6.44297 6.64387 6.66456 6.95398 7.18167 7.37950 7.39491 7.48229 7.68883 7.74592 7.95588 8.26826 8.50825 8.55726 8.70086 10.00486 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038628 B = 0.003721 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.682272 B = 7523.340774 C = 7834.707938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.460 3.540 4 O -0.500 6.500 5 C 0.155 3.845 6 H 0.127 0.873 7 C -0.158 4.158 8 N -0.723 5.723 9 C 0.572 3.428 10 O -0.544 6.544 11 C -0.109 4.109 12 C -0.214 4.214 13 C -0.083 4.083 14 C -0.220 4.220 15 C 0.081 3.919 16 C -0.442 4.442 17 H 0.094 0.906 18 C 0.083 3.917 19 N -0.803 5.803 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.243 1.243 24 C -0.134 4.134 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.410 0.590 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.286 0.714 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.456 -11.352 -6.046 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.302 3.698 4 O -0.387 6.387 5 C 0.048 3.952 6 H 0.144 0.856 7 C -0.216 4.216 8 N -0.380 5.380 9 C 0.363 3.637 10 O -0.421 6.421 11 C -0.112 4.112 12 C -0.234 4.234 13 C -0.101 4.101 14 C -0.239 4.239 15 C 0.078 3.922 16 C -0.470 4.470 17 H 0.112 0.888 18 C -0.136 4.136 19 N -0.427 5.427 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.167 1.167 24 C -0.154 4.154 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.249 0.751 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.929 -11.507 -5.645 18.929 hybrid contribution -0.730 0.905 -0.790 1.406 sum -14.659 -10.602 -6.435 19.201 Atomic orbital electron populations 1.23312 0.75984 1.03846 1.02750 1.86495 1.23628 1.32837 1.83979 1.23876 0.92008 0.81679 0.72238 1.90682 1.66823 1.36299 1.44858 1.20282 0.85942 0.85811 1.03177 0.85592 1.22144 1.03384 1.00605 0.95511 1.45852 1.19756 1.07021 1.65355 1.18798 0.79809 0.89603 0.75527 1.90707 1.52841 1.51912 1.46687 1.19320 0.96758 0.90022 1.05072 1.20437 0.99418 0.93106 1.10432 1.20519 0.95971 0.94985 0.98621 1.21196 0.95166 0.98340 1.09242 1.17692 0.93439 0.90636 0.90403 1.19516 1.01063 1.08935 1.17531 0.88802 1.26166 0.93723 0.94337 0.99376 1.69692 1.18853 1.17275 1.36885 0.86316 0.77664 0.80279 0.82078 1.19534 1.21638 1.16660 1.21269 0.94937 0.95756 1.03420 0.87873 0.91720 0.91757 0.90336 0.91868 0.89942 0.75129 0.88429 0.88189 0.87831 0.90299 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.57 10.47 -39.25 -0.41 -3.98 16 3 C 0.46 5.62 7.32 36.01 0.26 5.89 16 4 O -0.50 -7.26 15.59 -18.75 -0.29 -7.55 16 5 C 0.15 1.96 3.09 -69.08 -0.21 1.75 16 6 H 0.13 1.62 7.58 -51.93 -0.39 1.23 16 7 C -0.16 -1.68 9.41 37.16 0.35 -1.33 16 8 N -0.72 -11.14 4.90 -55.86 -0.27 -11.42 16 9 C 0.57 11.01 7.74 -12.31 -0.10 10.91 16 10 O -0.54 -11.60 16.00 5.32 0.09 -11.51 16 11 C -0.11 -2.31 5.87 -105.04 -0.62 -2.93 16 12 C -0.21 -4.22 9.55 -38.92 -0.37 -4.59 16 13 C -0.08 -1.70 10.01 -39.73 -0.40 -2.10 16 14 C -0.22 -5.13 7.17 -38.81 -0.28 -5.40 16 15 C 0.08 2.04 5.10 -106.87 -0.55 1.49 16 16 C -0.44 -11.82 9.57 -37.73 -0.36 -12.18 16 17 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 18 C 0.08 2.15 5.40 -17.35 -0.09 2.06 16 19 N -0.80 -21.09 13.93 55.55 0.77 -20.32 16 20 Si 0.91 20.26 24.52 -169.99 -4.17 16.09 16 21 H -0.27 -5.76 6.71 56.52 0.38 -5.39 16 22 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.24 -5.54 6.86 56.52 0.39 -5.15 16 24 C -0.13 -3.18 9.34 -38.44 -0.36 -3.54 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 28 H 0.08 0.66 8.11 -51.92 -0.42 0.24 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.41 6.05 5.81 -40.82 -0.24 5.82 16 32 H 0.10 1.63 6.38 -52.48 -0.33 1.29 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.10 2.39 4.72 -52.48 -0.25 2.14 16 35 H 0.29 6.78 8.30 -40.82 -0.34 6.45 16 36 H 0.12 2.80 7.64 -52.49 -0.40 2.40 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -29.64 311.54 -5.41 -35.04 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.16 Total: 7.63 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.65 Total: -8.67 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.50 Total: -31.74 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.62 Total: -23.05 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.17 Total: 16.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.64 -5.41 -35.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177867191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.679 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds