Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99812 * 2 1 4 4 O 1.20821 * 120.00059 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99565 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47517 * 300.00002 * 5 3 2 7 7 C 1.52998 * 109.47314 * 60.00046 * 5 3 2 8 8 N 1.46502 * 109.47077 * 179.97438 * 5 3 2 9 9 C 1.34779 * 119.99976 * 154.99748 * 8 5 3 10 10 O 1.21550 * 119.99871 * 0.02562 * 9 8 5 11 11 C 1.47887 * 119.99871 * 179.72552 * 9 8 5 12 12 C 1.39915 * 120.02585 * 0.02562 * 11 9 8 13 13 C 1.38333 * 120.35717 * 179.69549 * 12 11 9 14 14 C 1.37741 * 120.41036 * 0.60148 * 13 12 11 15 15 C 1.40751 * 120.04290 * 359.67518 * 14 13 12 16 16 C 1.41440 * 120.18119 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00094 * 150.17829 * 16 15 14 18 18 C 1.39935 * 119.99872 * 330.18118 * 16 15 14 19 19 N 1.30823 * 119.99799 * 161.73257 * 18 16 15 20 20 Si 1.86799 * 120.00019 * 341.72557 * 18 16 15 21 21 H 1.48504 * 109.47116 * 95.41618 * 20 18 16 22 22 H 1.48499 * 109.47507 * 215.41889 * 20 18 16 23 23 H 1.48500 * 109.47191 * 335.41768 * 20 18 16 24 24 C 1.38993 * 120.02429 * 180.27458 * 11 9 8 25 25 H 1.08997 * 109.47138 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47110 * 300.00107 * 1 2 3 27 27 H 1.08998 * 109.46874 * 59.99949 * 1 2 3 28 28 H 1.09009 * 109.47164 * 299.99836 * 7 5 3 29 29 H 1.09001 * 109.47304 * 59.99809 * 7 5 3 30 30 H 1.09000 * 109.47596 * 179.97438 * 7 5 3 31 31 H 0.96995 * 119.99821 * 335.00563 * 8 5 3 32 32 H 1.08006 * 119.82098 * 359.97438 * 12 11 9 33 33 H 1.08000 * 119.79089 * 180.30369 * 13 12 11 34 34 H 1.08003 * 119.97975 * 179.70344 * 14 13 12 35 35 H 0.97005 * 119.99646 * 179.97438 * 19 18 16 36 36 H 1.08002 * 120.20274 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1139 0.5810 -1.2483 8 7 3.9818 2.6797 -0.0002 9 6 5.1871 3.0263 0.4935 10 8 5.9296 2.1731 0.9388 11 6 5.6089 4.4437 0.4872 12 6 4.7570 5.4254 -0.0306 13 6 5.1420 6.7540 -0.0342 14 6 6.3730 7.1246 0.4604 15 6 7.2459 6.1504 0.9801 16 6 8.5104 6.5276 1.4891 17 1 8.9664 5.9536 2.2822 18 6 9.1706 7.6447 0.9653 19 7 10.1381 8.2092 1.6411 20 14 8.6707 8.3296 -0.6992 21 1 7.7067 9.4428 -0.5071 22 1 9.8738 8.8335 -1.4088 23 1 8.0339 7.2569 -1.5049 24 6 6.8541 4.8010 0.9908 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.8048 -0.4644 -1.2482 29 1 3.7245 1.0749 -2.1385 30 1 5.2024 0.6383 -1.2481 31 1 3.3893 3.3604 -0.3558 32 1 3.7916 5.1449 -0.4256 33 1 4.4751 7.5049 -0.4316 34 1 6.6685 8.1633 0.4498 35 1 10.5960 8.9834 1.2778 36 1 7.5164 4.0461 1.3882 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177867191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -124.128960 kcal Electronic energy + Delta-G solvation = -20723.982299 eV Core-core repulsion = 17365.148227 eV Total energy + Delta-G solvation = -3358.834072 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96403 -40.88889 -39.13784 -37.77619 -36.26978 -35.58485 -33.10134 -31.96560 -31.27068 -28.65965 -27.15708 -25.97130 -24.49678 -22.54763 -22.08374 -21.47917 -20.02737 -18.58441 -18.43845 -17.78042 -17.68458 -17.19919 -16.58641 -16.40326 -16.05908 -15.48466 -15.31319 -14.86974 -14.58009 -14.50975 -14.38156 -13.86770 -13.76705 -13.49568 -13.29037 -13.01296 -12.84732 -12.71764 -12.65914 -12.31454 -11.86691 -11.77252 -11.62822 -11.56973 -11.23996 -10.92405 -10.43631 -9.64970 -9.59671 -8.91863 -6.55602 0.13107 0.72984 0.93391 1.26156 1.28310 1.41894 1.48933 1.89095 2.12213 2.19313 2.63366 3.43650 3.49497 3.78846 3.92579 4.01147 4.24607 4.29099 4.33992 4.38762 4.55451 4.64087 4.71099 4.74192 4.86923 4.90104 5.10923 5.13833 5.18868 5.23231 5.40869 5.62214 5.70336 5.83804 6.06969 6.28516 6.39259 6.50543 6.64343 6.73912 7.07718 8.16998 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038628 B = 0.003721 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.682272 B = 7523.340774 C = 7834.707938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.470 3.530 4 O -0.524 6.524 5 C 0.149 3.851 6 H 0.124 0.876 7 C -0.152 4.152 8 N -0.707 5.707 9 C 0.574 3.426 10 O -0.571 6.571 11 C -0.113 4.113 12 C -0.185 4.185 13 C -0.082 4.082 14 C -0.224 4.224 15 C 0.066 3.934 16 C -0.486 4.486 17 H 0.052 0.948 18 C 0.046 3.954 19 N -0.848 5.848 20 Si 0.966 3.034 21 H -0.248 1.248 22 H -0.277 1.277 23 H -0.251 1.251 24 C -0.161 4.161 25 H 0.136 0.864 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.416 0.584 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.295 0.705 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.137 -11.769 -8.453 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.313 3.687 4 O -0.413 6.413 5 C 0.043 3.957 6 H 0.141 0.859 7 C -0.210 4.210 8 N -0.363 5.363 9 C 0.364 3.636 10 O -0.451 6.451 11 C -0.117 4.117 12 C -0.205 4.205 13 C -0.100 4.100 14 C -0.243 4.243 15 C 0.064 3.936 16 C -0.516 4.516 17 H 0.071 0.929 18 C -0.169 4.169 19 N -0.474 5.474 20 Si 0.788 3.212 21 H -0.173 1.173 22 H -0.204 1.204 23 H -0.174 1.174 24 C -0.181 4.181 25 H 0.154 0.846 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.256 0.744 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.652 -11.950 -8.056 22.788 hybrid contribution 0.138 0.815 -0.036 0.828 sum -17.514 -11.135 -8.092 22.276 Atomic orbital electron populations 1.23654 0.74001 1.06113 1.02815 1.86483 1.25428 1.31369 1.83290 1.23576 0.91480 0.81976 0.71653 1.90674 1.67220 1.37166 1.46276 1.20476 0.86908 0.84055 1.04298 0.85854 1.22109 1.02176 1.02055 0.94633 1.45650 1.18235 1.08705 1.63677 1.18466 0.80816 0.88521 0.75833 1.90701 1.54003 1.52301 1.48067 1.19597 0.95997 0.91981 1.04078 1.20974 1.00150 0.92385 1.06962 1.21010 0.95258 0.96386 0.97356 1.21393 0.96031 0.98094 1.08824 1.17772 0.93182 0.91600 0.91081 1.19462 1.02959 1.10433 1.18725 0.92928 1.26889 0.93518 0.94203 1.02256 1.69723 1.20518 1.18549 1.38603 0.85482 0.78193 0.79821 0.77674 1.17303 1.20359 1.17419 1.21210 0.96430 0.95166 1.05287 0.84584 0.91991 0.91405 0.87779 0.90869 0.91607 0.74426 0.84161 0.83719 0.87518 0.89410 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -5.97 10.47 -51.38 -0.54 -6.50 16 3 C 0.47 10.16 7.32 71.24 0.52 10.68 16 4 O -0.52 -13.70 15.59 21.98 0.34 -13.36 16 5 C 0.15 3.42 3.09 44.24 0.14 3.56 16 6 H 0.12 2.98 7.58 -2.39 -0.02 2.96 16 7 C -0.15 -2.82 9.41 71.98 0.68 -2.15 16 8 N -0.71 -20.02 4.90 -448.93 -2.20 -22.22 16 9 C 0.57 21.44 7.74 86.80 0.67 22.12 16 10 O -0.57 -24.49 16.00 -3.87 -0.06 -24.56 16 11 C -0.11 -4.70 5.87 -20.13 -0.12 -4.82 16 12 C -0.19 -6.58 9.55 22.70 0.22 -6.36 16 13 C -0.08 -3.05 10.01 22.17 0.22 -2.83 16 14 C -0.22 -10.10 7.17 22.77 0.16 -9.94 16 15 C 0.07 3.41 5.10 -21.32 -0.11 3.30 16 16 C -0.49 -27.79 9.57 23.47 0.22 -27.57 16 17 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 18 C 0.05 2.47 5.40 85.25 0.46 2.93 16 19 N -0.85 -46.69 13.93 21.82 0.30 -46.38 16 20 Si 0.97 41.59 24.52 68.60 1.68 43.27 16 21 H -0.25 -9.77 6.71 99.48 0.67 -9.10 16 22 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.25 -10.95 6.86 99.48 0.68 -10.26 16 24 C -0.16 -7.90 9.34 23.01 0.21 -7.68 16 25 H 0.14 0.60 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 27 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 28 H 0.10 1.42 8.11 -2.38 -0.02 1.40 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.42 10.71 5.81 -92.71 -0.54 10.17 16 32 H 0.14 3.83 6.38 -2.91 -0.02 3.81 16 33 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 34 H 0.11 4.72 4.72 -2.91 -0.01 4.71 16 35 H 0.30 14.49 8.30 -92.70 -0.77 13.72 16 36 H 0.10 4.98 7.64 -2.91 -0.02 4.96 16 Total: -1.00 -67.64 311.54 4.52 -63.12 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.51 Total: 23.89 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 4.48 Total: -17.27 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -1.90 Total: -68.60 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.26 Total: -44.42 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.68 Total: 43.27 kcal Total: -67.64 4.52 -63.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177867191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.007 kcal (2) G-P(sol) polarization free energy of solvation -67.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds