Wall clock time and date at job start Mon Mar 30 2020 01:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42892 * 109.46745 * 2 1 4 4 C 1.35999 * 116.99774 * 179.97438 * 3 2 1 5 5 C 1.38081 * 119.98674 * 0.26479 * 4 3 2 6 6 C 1.39998 * 119.82763 * 180.23022 * 5 4 3 7 7 C 1.46941 * 120.10378 * 179.78693 * 6 5 4 8 8 C 1.35142 * 120.00353 * 179.71700 * 7 6 5 9 9 C 1.41797 * 120.00302 * 179.97438 * 8 7 6 10 10 O 1.21783 * 119.99814 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00053 * 179.72975 * 9 8 7 12 12 C 1.36739 * 119.99995 * 180.27785 * 11 9 8 13 13 H 1.08002 * 120.00289 * 0.02562 * 12 11 9 14 14 C 1.39095 * 119.99992 * 179.97438 * 12 11 9 15 15 N 1.31334 * 120.00053 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99966 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47253 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 119.99924 * 16 14 12 19 19 H 1.48506 * 109.46902 * 240.00175 * 16 14 12 20 20 C 1.39999 * 119.79844 * 359.50598 * 6 5 4 21 21 C 1.37745 * 119.97284 * 0.25851 * 20 6 5 22 22 C 1.38869 * 120.17419 * 359.97322 * 21 20 6 23 23 O 1.35832 * 119.89880 * 180.02562 * 22 21 20 24 24 H 1.09007 * 109.47287 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.48098 * 300.00115 * 1 2 3 26 26 H 1.09005 * 109.47161 * 60.00531 * 1 2 3 27 27 H 1.09001 * 109.47250 * 239.99904 * 2 1 3 28 28 H 1.09003 * 109.46464 * 119.99725 * 2 1 3 29 29 H 1.08000 * 120.09202 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.99589 * 359.71629 * 7 6 5 31 31 H 1.08002 * 119.99525 * 0.02562 * 8 7 6 32 32 H 0.97000 * 119.99736 * 0.27190 * 11 9 8 33 33 H 0.97005 * 119.99984 * 179.97438 * 15 14 12 34 34 H 1.07996 * 120.01072 * 180.23781 * 20 6 5 35 35 H 1.07993 * 119.90875 * 180.02562 * 21 20 6 36 36 H 0.96696 * 113.99431 * 90.00278 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.1954 0.4302 -0.0045 6 6 5.5828 0.6175 0.0010 7 6 6.4832 -0.5436 0.0004 8 6 7.8222 -0.3605 -0.0001 9 6 8.6911 -1.4810 -0.0001 10 8 8.2308 -2.6085 -0.0001 11 7 10.0264 -1.2983 -0.0061 12 6 10.8643 -2.3789 -0.0118 13 1 10.4561 -3.3788 -0.0119 14 6 12.2424 -2.1903 -0.0186 15 7 12.7388 -0.9744 -0.0199 16 14 13.3871 -3.6666 -0.0271 17 1 12.5840 -4.9157 -0.0246 18 1 14.2373 -3.6266 -1.2439 19 1 14.2498 -3.6309 1.1811 20 6 6.1097 1.9146 0.0010 21 6 5.2633 3.0012 0.0011 22 6 3.8872 2.8142 0.0005 23 8 3.0577 3.8897 0.0001 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3635 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8901 29 1 3.7840 -0.5683 -0.0084 30 1 6.0750 -1.5435 0.0004 31 1 8.2304 0.6394 0.0003 32 1 10.3930 -0.4003 -0.0064 33 1 13.6999 -0.8430 -0.0243 34 1 7.1794 2.0630 0.0013 35 1 5.6708 4.0013 0.0007 36 1 2.8179 4.2010 -0.8835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179467098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:22 Heat of formation + Delta-G solvation = -104.209927 kcal Electronic energy + Delta-G solvation = -19981.211585 eV Core-core repulsion = 16623.241268 eV Total energy + Delta-G solvation = -3357.970318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.42863 -40.35149 -38.95941 -37.91354 -36.16266 -34.19429 -33.36567 -32.66024 -31.30622 -29.59827 -27.30030 -25.16089 -24.66092 -22.75133 -22.28671 -20.55324 -19.81467 -19.57272 -18.36892 -18.02212 -17.22914 -17.15270 -16.65470 -16.26539 -15.91148 -15.49416 -15.45451 -15.05910 -14.75163 -14.52058 -14.11319 -13.60740 -13.58612 -13.39761 -13.15430 -12.98695 -12.94157 -12.51147 -12.47579 -12.20995 -12.11105 -11.80959 -11.61313 -11.49085 -10.88012 -10.51620 -10.12200 -9.62405 -8.91849 -8.57969 -5.98750 -0.53710 0.34772 0.93141 1.41122 1.42586 1.55869 2.15990 2.26809 2.41199 2.76300 3.18796 3.27553 3.29029 3.77887 3.80461 4.03241 4.06341 4.10010 4.22722 4.30080 4.37259 4.52628 4.59105 4.79385 4.87584 4.93022 5.00804 5.10921 5.21927 5.27019 5.32230 5.44060 5.64349 5.66590 5.96489 6.25964 6.51358 6.87686 7.03104 7.44757 8.04177 8.59092 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032436 B = 0.003001 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.033418 B = 9328.743036 C =10168.715802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 O -0.320 6.320 4 C 0.093 3.907 5 C -0.182 4.182 6 C -0.038 4.038 7 C -0.049 4.049 8 C -0.177 4.177 9 C 0.450 3.550 10 O -0.652 6.652 11 N -0.550 5.550 12 C -0.334 4.334 13 H 0.083 0.917 14 C -0.010 4.010 15 N -0.907 5.907 16 Si 0.998 3.002 17 H -0.272 1.272 18 H -0.267 1.267 19 H -0.267 1.267 20 C -0.130 4.130 21 C -0.102 4.102 22 C 0.070 3.930 23 O -0.496 6.496 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.144 0.856 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.399 0.601 33 H 0.283 0.717 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.541 9.401 -1.746 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 O -0.234 6.234 4 C 0.047 3.953 5 C -0.201 4.201 6 C -0.039 4.039 7 C -0.071 4.071 8 C -0.198 4.198 9 C 0.243 3.757 10 O -0.544 6.544 11 N -0.183 5.183 12 C -0.463 4.463 13 H 0.101 0.899 14 C -0.212 4.212 15 N -0.547 5.547 16 Si 0.821 3.179 17 H -0.196 1.196 18 H -0.192 1.192 19 H -0.192 1.192 20 C -0.148 4.148 21 C -0.120 4.120 22 C 0.025 3.975 23 O -0.308 6.308 24 H 0.116 0.884 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.162 0.838 30 H 0.137 0.863 31 H 0.164 0.836 32 H 0.234 0.766 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.180 0.820 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -18.705 8.843 -1.147 20.722 hybrid contribution 0.950 -0.512 -0.470 1.177 sum -17.755 8.331 -1.618 19.679 Atomic orbital electron populations 1.21781 0.91039 1.04140 1.03338 1.23102 0.97264 0.80977 1.02125 1.86117 1.17828 1.30843 1.88655 1.19393 0.83267 0.93711 0.98916 1.21436 0.92726 0.98855 1.07122 1.18861 0.92304 0.93009 0.99695 1.22132 0.92479 0.97500 0.95005 1.22072 0.94390 0.98618 1.04701 1.17472 0.83079 0.90135 0.85029 1.90607 1.76774 1.27346 1.59671 1.41979 1.05093 1.09580 1.61667 1.19820 0.88247 0.88883 1.49387 0.89934 1.26204 0.98348 1.01022 0.95597 1.69634 1.14937 1.22039 1.48056 0.84798 0.77365 0.77128 0.78620 1.19646 1.19202 1.19248 1.21473 1.01243 0.90755 1.01338 1.21386 0.90798 1.00751 0.99098 1.18066 0.89272 0.84020 1.06170 1.84782 1.66202 1.44758 1.35068 0.88357 0.91829 0.91450 0.91217 0.91681 0.83786 0.86345 0.83603 0.76631 0.90712 0.83596 0.81985 0.73682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.04 16 2 C 0.04 0.68 5.46 71.98 0.39 1.07 16 3 O -0.32 -7.35 9.91 -79.51 -0.79 -8.14 16 4 C 0.09 2.28 6.69 22.52 0.15 2.44 16 5 C -0.18 -4.61 8.78 22.66 0.20 -4.42 16 6 C -0.04 -1.07 5.87 -20.14 -0.12 -1.19 16 7 C -0.05 -1.68 9.41 23.84 0.22 -1.46 16 8 C -0.18 -6.75 9.19 22.44 0.21 -6.54 16 9 C 0.45 22.65 7.52 85.12 0.64 23.29 16 10 O -0.65 -37.87 15.68 -4.61 -0.07 -37.94 16 11 N -0.55 -28.96 5.26 -315.00 -1.66 -30.62 16 12 C -0.33 -19.04 9.67 84.13 0.81 -18.23 16 13 H 0.08 5.03 7.15 -2.91 -0.02 5.01 16 14 C -0.01 -0.53 5.50 84.97 0.47 -0.07 16 15 N -0.91 -48.04 13.05 21.69 0.28 -47.75 16 16 Si 1.00 42.04 29.55 68.60 2.03 44.06 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 19 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 20 C -0.13 -3.13 9.40 22.58 0.21 -2.92 16 21 C -0.10 -2.14 9.96 22.30 0.22 -1.92 16 22 C 0.07 1.61 6.73 22.71 0.15 1.76 16 23 O -0.50 -9.97 13.27 -77.63 -1.03 -11.00 16 24 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.07 1.08 7.65 -2.39 -0.02 1.06 16 28 H 0.06 1.07 7.67 -2.39 -0.02 1.05 16 29 H 0.14 3.23 6.28 -2.91 -0.02 3.21 16 30 H 0.12 4.34 7.45 -2.91 -0.02 4.32 16 31 H 0.15 4.53 6.07 -2.91 -0.02 4.51 16 32 H 0.40 19.68 7.85 -92.71 -0.73 18.95 16 33 H 0.28 13.83 8.31 -92.70 -0.77 13.06 16 34 H 0.15 3.16 6.15 -2.91 -0.02 3.14 16 35 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.40 4.27 9.06 -74.06 -0.67 3.60 16 Total: -1.00 -71.55 318.63 2.80 -68.74 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.26 Total: 31.87 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 4.30 Total: -9.22 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.38 Total: -78.37 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -1.89 Total: -57.09 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -71.55 2.80 -68.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179467098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.466 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds