Wall clock time and date at job start Mon Mar 30 2020 02:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99819 * 2 1 4 4 C 1.52998 * 112.85005 * 62.16126 * 3 2 1 5 5 N 1.46500 * 109.47371 * 51.36245 * 4 3 2 6 6 S 1.65596 * 119.99916 * 165.08437 * 5 4 3 7 7 O 1.42102 * 104.28076 * 308.93073 * 6 5 4 8 8 O 1.42107 * 104.27816 * 181.07533 * 6 5 4 9 9 C 1.81398 * 104.44857 * 65.00523 * 6 5 4 10 10 C 1.52999 * 109.47077 * 179.97438 * 9 6 5 11 11 C 1.50702 * 109.47250 * 179.97438 * 10 9 6 12 12 H 1.07994 * 119.99766 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00160 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99592 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99860 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47438 * 89.99745 * 15 13 11 17 17 H 1.48500 * 109.47081 * 209.99540 * 15 13 11 18 18 H 1.48503 * 109.47457 * 329.99304 * 15 13 11 19 19 C 1.53777 * 113.68946 * 193.43068 * 3 2 1 20 20 C 1.53782 * 87.08376 * 89.12490 * 19 3 2 21 21 C 1.53780 * 113.61386 * 290.96473 * 3 2 1 22 22 H 1.08997 * 109.47135 * 175.26096 * 1 2 3 23 23 H 1.08999 * 109.47326 * 295.25770 * 1 2 3 24 24 H 1.08992 * 109.47178 * 55.25934 * 1 2 3 25 25 H 1.09001 * 109.47291 * 291.36584 * 4 3 2 26 26 H 1.08996 * 109.47187 * 171.36605 * 4 3 2 27 27 H 0.96997 * 119.99534 * 345.09361 * 5 4 3 28 28 H 1.08999 * 109.46977 * 299.99389 * 9 6 5 29 29 H 1.09001 * 109.47238 * 60.00024 * 9 6 5 30 30 H 1.08994 * 109.47572 * 300.00198 * 10 9 6 31 31 H 1.09004 * 109.47463 * 60.00327 * 10 9 6 32 32 H 0.97004 * 119.99711 * 180.02562 * 14 13 11 33 33 H 1.09007 * 113.61236 * 203.67588 * 19 3 2 34 34 H 1.08996 * 113.61371 * 334.57695 * 19 3 2 35 35 H 1.08998 * 113.61376 * 270.88561 * 20 19 3 36 36 H 1.08997 * 113.61281 * 139.97832 * 20 19 3 37 37 H 1.08999 * 113.61138 * 25.34618 * 21 3 2 38 38 H 1.08995 * 113.61763 * 156.16700 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6504 2.1161 1.2467 5 7 1.9410 1.3244 2.4447 6 16 2.0043 2.0590 3.9274 7 8 2.8859 3.1572 3.7371 8 8 2.3279 1.0070 4.8263 9 6 0.3116 2.6441 4.2153 10 6 0.2393 3.3490 5.5713 11 6 -1.1668 3.8357 5.8102 12 1 -1.9322 3.6601 5.0689 13 6 -1.4759 4.5059 6.9749 14 7 -0.5436 4.7201 7.8774 15 14 -3.2189 5.1084 7.2713 16 1 -3.9967 4.0514 7.9663 17 1 -3.1836 6.3312 8.1132 18 1 -3.8624 5.4218 5.9701 19 6 3.5128 1.3129 -0.3271 20 6 3.1101 1.4342 -1.8063 21 6 1.8002 2.0733 -1.3158 22 1 -0.3633 -1.0241 -0.0849 23 1 -0.3634 0.4385 0.9294 24 1 -0.3633 0.5856 -0.8444 25 1 0.5894 2.3652 1.2245 26 1 2.2386 3.0335 1.2660 27 1 2.0964 0.3699 2.3692 28 1 0.0294 3.3421 3.4271 29 1 -0.3721 1.7951 4.2107 30 1 0.5213 2.6508 6.3593 31 1 0.9229 4.1980 5.5764 32 1 -0.7611 5.1914 8.6969 33 1 4.0386 2.1877 0.0555 34 1 4.0165 0.3766 -0.0871 35 1 2.9688 0.4731 -2.3005 36 1 3.7417 2.1157 -2.3762 37 1 0.9213 1.7507 -1.8739 38 1 1.8563 3.1560 -1.2033 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180389518.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:16 Heat of formation + Delta-G solvation = -107.024648 kcal Electronic energy + Delta-G solvation = -20248.730765 eV Core-core repulsion = 17026.082343 eV Total energy + Delta-G solvation = -3222.648422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27320 -36.56309 -35.81969 -35.42842 -34.53356 -33.89867 -31.16835 -27.68932 -27.19979 -25.64696 -25.58476 -22.67653 -21.66829 -19.82684 -18.80737 -17.53735 -17.03514 -16.41380 -16.07343 -15.52488 -15.35988 -15.28829 -14.58547 -14.47840 -14.39650 -14.32597 -13.36068 -13.12729 -12.59907 -12.50870 -12.14864 -11.79869 -11.74021 -11.57830 -11.56075 -11.48024 -11.15204 -11.09255 -11.03382 -10.96796 -10.46697 -10.41260 -10.38833 -9.79481 -9.69227 -9.44583 -8.99301 -8.51249 -6.13323 -4.18971 0.81035 3.09651 3.25090 3.31329 3.33772 3.47848 4.21057 4.24835 4.34667 4.37498 4.46617 4.57041 4.77039 5.01816 5.13053 5.21728 5.21959 5.30825 5.37772 5.47476 5.48869 5.54406 5.61063 5.66599 5.67799 5.79339 5.89673 5.99326 6.06240 6.47673 6.97080 7.19018 7.29516 7.36021 7.79447 8.16668 8.84335 9.45761 10.97744 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.004296 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.313701 B = 6516.651608 C = 6983.246779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.358 6.358 3 C 0.084 3.916 4 C 0.102 3.898 5 N -1.121 6.121 6 S 2.594 3.406 7 O -0.968 6.968 8 O -0.967 6.967 9 C -0.590 4.590 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.123 4.123 20 C -0.135 4.135 21 C -0.162 4.162 22 H 0.087 0.913 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.416 0.584 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 -6.955 -19.329 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.276 6.276 3 C 0.043 3.957 4 C -0.025 4.025 5 N -0.879 5.879 6 S 2.691 3.309 7 O -0.958 6.958 8 O -0.957 6.957 9 C -0.724 4.724 10 C -0.011 4.011 11 C -0.560 4.560 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.160 4.160 20 C -0.172 4.172 21 C -0.200 4.200 22 H 0.105 0.895 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.251 0.749 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.278 -6.784 -18.619 20.272 hybrid contribution -1.879 0.205 -0.006 1.890 sum 2.399 -6.579 -18.624 19.897 Atomic orbital electron populations 1.22811 0.80889 1.02814 1.00753 1.87903 1.19896 1.25216 1.94624 1.22753 0.95893 0.84267 0.92800 1.21726 1.00986 0.94987 0.84815 1.55637 1.89382 1.20433 1.22473 1.05520 0.78793 0.74260 0.72341 1.93532 1.62269 1.55401 1.84563 1.93555 1.83918 1.55598 1.62631 1.30452 1.20320 1.11106 1.10500 1.18962 1.00002 0.95634 0.86538 1.20999 0.94077 1.37077 1.03863 0.92098 1.25068 0.97673 0.95803 0.95932 1.69956 1.32947 1.41112 1.08788 0.86468 0.84126 0.78387 0.78280 1.20465 1.20993 1.19796 1.23025 0.93413 1.03657 0.95908 1.22765 0.96818 1.01198 0.96427 1.23512 0.99132 1.00742 0.96633 0.89502 0.93200 0.93765 0.91661 0.89085 0.74936 0.86474 0.86172 0.94815 0.94813 0.92517 0.88255 0.90313 0.89854 0.91117 0.90709 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.53 101.05 1.06 1.27 16 2 O -0.36 -3.80 9.92 -35.23 -0.35 -4.15 16 3 C 0.08 0.84 0.84 -89.81 -0.08 0.76 16 4 C 0.10 1.16 5.02 -4.04 -0.02 1.14 16 5 N -1.12 -15.01 5.84 -10.61 -0.06 -15.07 16 6 S 2.59 46.49 5.46 -107.50 -0.59 45.90 16 7 O -0.97 -19.95 17.50 -57.54 -1.01 -20.95 16 8 O -0.97 -20.38 18.08 -57.54 -1.04 -21.42 16 9 C -0.59 -11.20 6.01 37.16 0.22 -10.98 16 10 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 11 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 15 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.12 -1.15 7.47 -25.92 -0.19 -1.34 16 20 C -0.13 -1.05 8.02 -25.92 -0.21 -1.26 16 21 C -0.16 -1.29 7.20 -25.92 -0.19 -1.48 16 22 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.45 7.21 -51.93 -0.37 0.07 16 24 H 0.04 0.33 6.78 -51.93 -0.35 -0.03 16 25 H 0.07 0.65 7.46 -51.93 -0.39 0.26 16 26 H 0.09 1.03 7.55 -51.93 -0.39 0.64 16 27 H 0.42 5.19 8.12 -34.47 -0.28 4.91 16 28 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 29 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.10 0.91 8.00 -51.93 -0.42 0.49 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.56 6.92 -51.93 -0.36 0.20 16 38 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -34.65 326.89 -8.25 -42.91 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.90 Total: 1.95 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 0.05 Total: -24.46 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.67 Total: -40.80 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.40 Total: -46.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 46.49 SS G_CDS: -0.59 Total: 45.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.65 -8.25 -42.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180389518.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.118 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds