Wall clock time and date at job start Mon Mar 30 2020 02:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99819 * 2 1 4 4 C 1.52998 * 112.85005 * 62.16126 * 3 2 1 5 5 N 1.46500 * 109.47371 * 51.36245 * 4 3 2 6 6 S 1.65596 * 119.99916 * 165.08437 * 5 4 3 7 7 O 1.42102 * 104.28076 * 308.93073 * 6 5 4 8 8 O 1.42107 * 104.27816 * 181.07533 * 6 5 4 9 9 C 1.81398 * 104.44857 * 65.00523 * 6 5 4 10 10 C 1.52999 * 109.47077 * 179.97438 * 9 6 5 11 11 C 1.50702 * 109.47250 * 179.97438 * 10 9 6 12 12 H 1.07994 * 119.99766 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00160 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99592 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99860 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47438 * 89.99745 * 15 13 11 17 17 H 1.48500 * 109.47081 * 209.99540 * 15 13 11 18 18 H 1.48503 * 109.47457 * 329.99304 * 15 13 11 19 19 C 1.53777 * 113.68946 * 193.43068 * 3 2 1 20 20 C 1.53782 * 87.08376 * 89.12490 * 19 3 2 21 21 C 1.53780 * 113.61386 * 290.96473 * 3 2 1 22 22 H 1.08997 * 109.47135 * 175.26096 * 1 2 3 23 23 H 1.08999 * 109.47326 * 295.25770 * 1 2 3 24 24 H 1.08992 * 109.47178 * 55.25934 * 1 2 3 25 25 H 1.09001 * 109.47291 * 291.36584 * 4 3 2 26 26 H 1.08996 * 109.47187 * 171.36605 * 4 3 2 27 27 H 0.96997 * 119.99534 * 345.09361 * 5 4 3 28 28 H 1.08999 * 109.46977 * 299.99389 * 9 6 5 29 29 H 1.09001 * 109.47238 * 60.00024 * 9 6 5 30 30 H 1.08994 * 109.47572 * 300.00198 * 10 9 6 31 31 H 1.09004 * 109.47463 * 60.00327 * 10 9 6 32 32 H 0.97004 * 119.99711 * 180.02562 * 14 13 11 33 33 H 1.09007 * 113.61236 * 203.67588 * 19 3 2 34 34 H 1.08996 * 113.61371 * 334.57695 * 19 3 2 35 35 H 1.08998 * 113.61376 * 270.88561 * 20 19 3 36 36 H 1.08997 * 113.61281 * 139.97832 * 20 19 3 37 37 H 1.08999 * 113.61138 * 25.34618 * 21 3 2 38 38 H 1.08995 * 113.61763 * 156.16700 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6504 2.1161 1.2467 5 7 1.9410 1.3244 2.4447 6 16 2.0043 2.0590 3.9274 7 8 2.8859 3.1572 3.7371 8 8 2.3279 1.0070 4.8263 9 6 0.3116 2.6441 4.2153 10 6 0.2393 3.3490 5.5713 11 6 -1.1668 3.8357 5.8102 12 1 -1.9322 3.6601 5.0689 13 6 -1.4759 4.5059 6.9749 14 7 -0.5436 4.7201 7.8774 15 14 -3.2189 5.1084 7.2713 16 1 -3.9967 4.0514 7.9663 17 1 -3.1836 6.3312 8.1132 18 1 -3.8624 5.4218 5.9701 19 6 3.5128 1.3129 -0.3271 20 6 3.1101 1.4342 -1.8063 21 6 1.8002 2.0733 -1.3158 22 1 -0.3633 -1.0241 -0.0849 23 1 -0.3634 0.4385 0.9294 24 1 -0.3633 0.5856 -0.8444 25 1 0.5894 2.3652 1.2245 26 1 2.2386 3.0335 1.2660 27 1 2.0964 0.3699 2.3692 28 1 0.0294 3.3421 3.4271 29 1 -0.3721 1.7951 4.2107 30 1 0.5213 2.6508 6.3593 31 1 0.9229 4.1980 5.5764 32 1 -0.7611 5.1914 8.6969 33 1 4.0386 2.1877 0.0555 34 1 4.0165 0.3766 -0.0871 35 1 2.9688 0.4731 -2.3005 36 1 3.7417 2.1157 -2.3762 37 1 0.9213 1.7507 -1.8739 38 1 1.8563 3.1560 -1.2033 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180389518.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:15 Heat of formation + Delta-G solvation = -133.669840 kcal Electronic energy + Delta-G solvation = -20249.886187 eV Core-core repulsion = 17026.082343 eV Total energy + Delta-G solvation = -3223.803844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99761 -38.15348 -37.01746 -36.51724 -35.89485 -35.61107 -33.12742 -28.54603 -27.90165 -27.58428 -26.29485 -23.60050 -23.43414 -20.66342 -20.09901 -19.07834 -18.43093 -17.77681 -17.12580 -16.90526 -16.57127 -16.43209 -16.15503 -15.61386 -15.25709 -15.06547 -14.95813 -14.47834 -13.94631 -13.72512 -13.37421 -13.19839 -13.16927 -13.10414 -12.93188 -12.78933 -12.58155 -12.30601 -12.24439 -12.13021 -11.88260 -11.74401 -11.65515 -11.25486 -11.09790 -10.64654 -10.50377 -10.20799 -8.25874 -6.40001 -0.67854 1.41283 1.43061 1.54090 1.83211 2.38207 2.73733 2.81574 3.07759 3.24468 3.54236 3.65316 3.67414 3.92579 4.00963 4.13063 4.33870 4.43702 4.51753 4.58841 4.62996 4.74777 4.79928 4.84624 4.87596 4.96047 5.09718 5.13550 5.26990 5.27529 5.28247 5.42138 5.68378 6.05605 6.08213 6.31463 6.73763 7.30291 8.86485 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.004296 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.313701 B = 6516.651608 C = 6983.246779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.373 6.373 3 C 0.080 3.920 4 C 0.089 3.911 5 N -1.103 6.103 6 S 2.621 3.379 7 O -0.996 6.996 8 O -1.001 7.001 9 C -0.587 4.587 10 C 0.019 3.981 11 C -0.539 4.539 12 H 0.077 0.923 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.974 3.026 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.256 1.256 19 C -0.132 4.132 20 C -0.128 4.128 21 C -0.154 4.154 22 H 0.097 0.903 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.423 0.577 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.005 0.995 31 H 0.008 0.992 32 H 0.267 0.733 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -6.983 -21.505 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.291 6.291 3 C 0.038 3.962 4 C -0.038 4.038 5 N -0.865 5.865 6 S 2.717 3.283 7 O -0.985 6.985 8 O -0.992 6.992 9 C -0.719 4.719 10 C -0.020 4.020 11 C -0.578 4.578 12 H 0.095 0.905 13 C -0.202 4.202 14 N -0.574 5.574 15 Si 0.798 3.202 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.180 1.180 19 C -0.170 4.170 20 C -0.165 4.165 21 C -0.192 4.192 22 H 0.115 0.885 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.260 0.740 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.023 0.977 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.628 -6.821 -20.807 22.053 hybrid contribution -1.321 0.170 0.609 1.465 sum 1.307 -6.651 -20.197 21.304 Atomic orbital electron populations 1.22972 0.79968 1.03840 1.01180 1.87892 1.21005 1.25553 1.94698 1.22837 0.96192 0.84307 0.92844 1.22092 1.02348 0.95050 0.84270 1.55152 1.89045 1.20803 1.21477 1.04447 0.77857 0.73269 0.72701 1.93493 1.63044 1.56739 1.85269 1.93501 1.84310 1.56575 1.64785 1.30327 1.22068 1.12016 1.07486 1.18831 0.98903 0.94733 0.89511 1.21518 0.95202 1.36739 1.04309 0.90523 1.26122 1.02392 0.96006 0.95719 1.70106 1.35564 1.42259 1.09491 0.85305 0.78400 0.77733 0.78767 1.19704 1.20891 1.18019 1.23110 0.93233 1.03258 0.97367 1.22728 0.96861 1.01499 0.95404 1.23519 0.99526 1.01137 0.95054 0.88509 0.93564 0.92329 0.89691 0.89052 0.74017 0.83831 0.84003 0.97668 0.97388 0.92406 0.88299 0.91157 0.89919 0.89840 0.89797 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.53 113.37 1.19 1.43 16 2 O -0.37 -7.14 9.92 -148.98 -1.48 -8.62 16 3 C 0.08 1.42 0.84 -10.27 -0.01 1.41 16 4 C 0.09 1.83 5.02 86.38 0.43 2.26 16 5 N -1.10 -28.04 5.84 -187.49 -1.09 -29.13 16 6 S 2.62 93.39 5.46 -56.49 -0.31 93.08 16 7 O -1.00 -41.21 17.50 -127.65 -2.23 -43.44 16 8 O -1.00 -42.73 18.08 -127.65 -2.31 -45.04 16 9 C -0.59 -21.72 6.01 71.98 0.43 -21.28 16 10 C 0.02 0.99 4.98 29.85 0.15 1.14 16 11 C -0.54 -29.59 9.11 25.60 0.23 -29.35 16 12 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 13 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 14 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 15 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 C -0.13 -2.29 7.47 31.12 0.23 -2.06 16 20 C -0.13 -1.70 8.02 31.12 0.25 -1.45 16 21 C -0.15 -2.03 7.20 31.12 0.22 -1.80 16 22 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.05 0.71 7.21 -2.39 -0.02 0.69 16 24 H 0.06 0.69 6.78 -2.39 -0.02 0.67 16 25 H 0.08 1.43 7.46 -2.39 -0.02 1.41 16 26 H 0.09 1.91 7.55 -2.39 -0.02 1.89 16 27 H 0.42 10.01 8.12 -96.75 -0.79 9.23 16 28 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 29 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 30 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.10 1.69 8.00 -2.38 -0.02 1.67 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.97 6.92 -2.39 -0.02 0.95 16 38 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -75.12 326.89 -1.25 -76.36 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.26 Total: 17.86 kcal Atomic # 6 Polarization: -53.07 SS G_CDS: 3.60 Total: -49.47 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -0.81 Total: -85.64 kcal Atomic # 8 Polarization: -91.09 SS G_CDS: -6.02 Total: -97.10 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 93.39 SS G_CDS: -0.31 Total: 93.08 kcal Total: -75.12 -1.25 -76.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180389518.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.307 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds