Wall clock time and date at job start Mon Mar 30 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21721 * 119.99636 * 0.02562 * 13 12 2 15 15 C 1.46250 * 120.00105 * 180.02562 * 13 12 2 16 16 C 1.34979 * 119.99790 * 180.02562 * 15 13 12 17 17 C 1.47009 * 119.99651 * 179.97438 * 16 15 13 18 18 C 1.39954 * 120.09616 * 359.97438 * 17 16 15 19 19 C 1.37745 * 119.97538 * 179.97438 * 18 17 16 20 20 C 1.38857 * 120.17481 * 0.02562 * 19 18 17 21 21 O 1.35827 * 119.90364 * 180.02562 * 20 19 18 22 22 C 1.39437 * 120.19459 * 359.97438 * 20 19 18 23 23 O 1.35997 * 119.98998 * 180.02562 * 22 20 19 24 24 C 1.38096 * 120.01891 * 359.74415 * 22 20 19 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 30 30 H 1.07996 * 120.00001 * 359.97438 * 15 13 12 31 31 H 1.07991 * 120.00568 * 359.97438 * 16 15 13 32 32 H 1.07997 * 120.01230 * 359.95876 * 18 17 16 33 33 H 1.07999 * 119.91432 * 180.02562 * 19 18 17 34 34 H 0.96700 * 113.99824 * 90.00056 * 21 20 19 35 35 H 0.96698 * 114.00194 * 90.00409 * 23 22 20 36 36 H 1.08002 * 120.08566 * 180.25659 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8580 1.1628 -2.4116 15 6 2.6342 -0.7079 -3.5514 16 6 2.7636 -0.0343 -4.7139 17 6 3.2537 -0.7274 -5.9142 18 6 3.5872 -2.0852 -5.8536 19 6 4.0457 -2.7323 -6.9798 20 6 4.1788 -2.0407 -8.1766 21 8 4.6309 -2.6843 -9.2839 22 6 3.8486 -0.6877 -8.2451 23 8 3.9801 -0.0145 -9.4194 24 6 3.3827 -0.0325 -7.1223 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 2.2490 -1.6317 -1.1525 30 1 2.8911 -1.7557 -3.5028 31 1 2.5071 1.0136 -4.7624 32 1 3.4853 -2.6255 -4.9240 33 1 4.3023 -3.7802 -6.9320 34 1 3.9319 -3.0833 -9.8198 35 1 3.1883 -0.0332 -9.9743 36 1 3.1227 1.0144 -7.1752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180994693.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:58 Heat of formation + Delta-G solvation = -77.524679 kcal Electronic energy + Delta-G solvation = -19998.405556 eV Core-core repulsion = 16641.592398 eV Total energy + Delta-G solvation = -3356.813159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48722 -39.11213 -37.33316 -37.25556 -35.09668 -33.23795 -32.38699 -30.77779 -30.03872 -28.46945 -25.23495 -24.29669 -23.18983 -21.93571 -20.23432 -19.49229 -19.10715 -17.77888 -17.58300 -16.52316 -16.40282 -15.81853 -15.50495 -15.15232 -14.62132 -14.31822 -14.09815 -14.03412 -13.25373 -12.98886 -12.90936 -12.82660 -12.59067 -12.21246 -11.88636 -11.71069 -11.60337 -11.30632 -10.82529 -10.55954 -10.22809 -10.18046 -9.74092 -9.27001 -9.24952 -9.19083 -8.77281 -8.38177 -8.09783 -6.22222 -4.24938 0.28069 0.88844 1.82126 3.22443 3.25290 3.34833 3.39421 3.67801 3.75779 3.84193 3.96375 4.30735 4.47764 4.64654 4.81021 5.03284 5.08954 5.12700 5.35372 5.45862 5.51785 5.82437 5.84486 5.94581 6.25242 6.29707 6.32945 6.40253 6.45952 6.54444 6.84703 7.01878 7.18481 7.26672 7.41567 7.49959 8.13612 8.50498 8.74163 8.90207 9.38533 10.89963 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.044723 B = 0.002890 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.926510 B = 9685.858517 C =10115.892915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.693 5.693 13 C 0.530 3.470 14 O -0.559 6.559 15 C -0.180 4.180 16 C -0.050 4.050 17 C -0.051 4.051 18 C -0.098 4.098 19 C -0.129 4.129 20 C 0.081 3.919 21 O -0.488 6.488 22 C 0.079 3.921 23 O -0.488 6.488 24 C -0.113 4.113 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.396 0.604 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.387 0.613 35 H 0.387 0.613 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -4.271 -24.032 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.340 5.340 13 C 0.318 3.682 14 O -0.441 6.441 15 C -0.201 4.201 16 C -0.070 4.070 17 C -0.051 4.051 18 C -0.116 4.116 19 C -0.148 4.148 20 C 0.036 3.964 21 O -0.298 6.298 22 C 0.034 3.966 23 O -0.297 6.297 24 C -0.131 4.131 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.230 0.770 30 H 0.145 0.855 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.242 0.758 35 H 0.242 0.758 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.950 -3.157 -23.403 23.634 hybrid contribution -1.358 -0.063 -0.082 1.362 sum -0.408 -3.221 -23.485 23.708 Atomic orbital electron populations 1.22448 0.99227 1.00884 0.99351 1.19125 0.90190 0.94750 0.82776 0.93273 1.21043 1.33328 1.14464 0.88547 0.90164 1.24836 0.95497 0.96722 0.95512 1.69868 1.44893 1.40113 0.98057 0.86867 0.80508 0.83600 0.77477 1.20287 1.22134 1.18625 1.46127 1.64286 1.13815 1.09769 1.18256 0.79038 0.86983 0.83966 1.90772 1.51949 1.15829 1.85525 1.23231 1.02568 1.00617 0.93642 1.22224 0.94357 1.00057 0.90391 1.18989 0.99568 0.93390 0.93174 1.21404 0.97762 0.93779 0.98679 1.21294 1.00452 1.00873 0.92138 1.18967 0.99625 0.89930 0.87909 1.84876 1.35896 1.72826 1.36215 1.18656 1.00848 0.90011 0.87129 1.84938 1.41111 1.74328 1.29348 1.21582 0.99179 1.00781 0.91567 0.92786 0.94506 0.93419 0.92260 0.77006 0.85472 0.84464 0.84423 0.84583 0.75764 0.75801 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 8.96 37.16 0.33 -3.26 16 2 C 0.24 5.61 2.15 -69.08 -0.15 5.46 16 3 H 0.05 1.30 6.63 -51.93 -0.34 0.95 16 4 C -0.54 -14.46 9.31 -34.44 -0.32 -14.78 16 5 H 0.08 2.27 7.98 -52.48 -0.42 1.85 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 8 Si 0.89 21.75 24.37 -169.99 -4.14 17.61 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 12 N -0.69 -13.66 5.06 -56.38 -0.29 -13.95 16 13 C 0.53 9.96 7.70 -13.04 -0.10 9.86 16 14 O -0.56 -12.56 15.89 5.17 0.08 -12.47 16 15 C -0.18 -2.45 9.40 -37.52 -0.35 -2.81 16 16 C -0.05 -0.63 9.45 -37.19 -0.35 -0.98 16 17 C -0.05 -0.54 5.87 -105.05 -0.62 -1.16 16 18 C -0.10 -0.92 9.40 -39.12 -0.37 -1.29 16 19 C -0.13 -1.12 9.96 -39.53 -0.39 -1.52 16 20 C 0.08 0.76 6.72 -38.91 -0.26 0.50 16 21 O -0.49 -4.07 13.27 -33.87 -0.45 -4.52 16 22 C 0.08 0.77 6.71 -39.19 -0.26 0.50 16 23 O -0.49 -4.27 13.28 -34.41 -0.46 -4.72 16 24 C -0.11 -1.12 9.72 -38.99 -0.38 -1.50 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.40 6.74 8.52 -40.82 -0.35 6.39 16 30 H 0.13 1.33 6.06 -52.49 -0.32 1.01 16 31 H 0.14 1.81 7.52 -52.49 -0.39 1.41 16 32 H 0.14 1.08 6.15 -52.49 -0.32 0.75 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.39 1.17 9.06 45.56 0.41 1.58 16 35 H 0.39 1.33 9.06 45.56 0.41 1.75 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 312.13 15.07 4.70 4.70 Total: -1.00 -35.29 312.13 -5.46 -40.75 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -2.36 Total: 7.09 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -3.32 Total: -8.88 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.49 Total: -39.57 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.82 Total: -21.71 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.29 -5.46 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180994693.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.773 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds