Wall clock time and date at job start Mon Mar 30 2020 01:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21721 * 119.99636 * 0.02562 * 13 12 2 15 15 C 1.46250 * 120.00105 * 180.02562 * 13 12 2 16 16 C 1.34979 * 119.99790 * 180.02562 * 15 13 12 17 17 C 1.47009 * 119.99651 * 179.97438 * 16 15 13 18 18 C 1.39954 * 120.09616 * 359.97438 * 17 16 15 19 19 C 1.37745 * 119.97538 * 179.97438 * 18 17 16 20 20 C 1.38857 * 120.17481 * 0.02562 * 19 18 17 21 21 O 1.35827 * 119.90364 * 180.02562 * 20 19 18 22 22 C 1.39437 * 120.19459 * 359.97438 * 20 19 18 23 23 O 1.35997 * 119.98998 * 180.02562 * 22 20 19 24 24 C 1.38096 * 120.01891 * 359.74415 * 22 20 19 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 30 30 H 1.07996 * 120.00001 * 359.97438 * 15 13 12 31 31 H 1.07991 * 120.00568 * 359.97438 * 16 15 13 32 32 H 1.07997 * 120.01230 * 359.95876 * 18 17 16 33 33 H 1.07999 * 119.91432 * 180.02562 * 19 18 17 34 34 H 0.96700 * 113.99824 * 90.00056 * 21 20 19 35 35 H 0.96698 * 114.00194 * 90.00409 * 23 22 20 36 36 H 1.08002 * 120.08566 * 180.25659 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8580 1.1628 -2.4116 15 6 2.6342 -0.7079 -3.5514 16 6 2.7636 -0.0343 -4.7139 17 6 3.2537 -0.7274 -5.9142 18 6 3.5872 -2.0852 -5.8536 19 6 4.0457 -2.7323 -6.9798 20 6 4.1788 -2.0407 -8.1766 21 8 4.6309 -2.6843 -9.2839 22 6 3.8486 -0.6877 -8.2451 23 8 3.9801 -0.0145 -9.4194 24 6 3.3827 -0.0325 -7.1223 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 2.2490 -1.6317 -1.1525 30 1 2.8911 -1.7557 -3.5028 31 1 2.5071 1.0136 -4.7624 32 1 3.4853 -2.6255 -4.9240 33 1 4.3023 -3.7802 -6.9320 34 1 3.9319 -3.0833 -9.8198 35 1 3.1883 -0.0332 -9.9743 36 1 3.1227 1.0144 -7.1752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180994693.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:57 Heat of formation + Delta-G solvation = -106.467055 kcal Electronic energy + Delta-G solvation = -19999.660592 eV Core-core repulsion = 16641.592398 eV Total energy + Delta-G solvation = -3358.068194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19650 -40.59747 -38.07165 -37.92160 -36.85722 -34.41915 -34.20077 -31.92607 -31.31527 -29.38812 -27.23288 -25.40581 -23.90961 -23.19084 -21.70000 -20.82712 -19.76318 -19.16114 -18.44370 -18.02189 -17.50989 -17.02294 -16.79430 -16.03755 -15.85696 -15.77352 -15.37585 -14.89150 -14.79156 -14.68123 -14.12731 -13.76302 -13.74068 -13.51209 -13.39723 -13.18473 -12.78727 -12.59471 -12.33001 -12.14695 -11.62684 -11.28939 -11.23104 -11.09770 -10.89194 -10.83566 -9.93093 -9.85975 -9.10534 -8.38475 -6.44421 -0.57389 0.21238 0.87439 1.27346 1.35789 1.45337 2.26202 2.29722 2.48208 2.70971 2.97977 3.08481 3.21750 3.66635 3.78641 4.09406 4.16214 4.28065 4.35008 4.46307 4.57102 4.70602 4.75585 4.80264 4.98055 5.02751 5.09553 5.25712 5.27914 5.41230 5.43112 5.56632 5.64414 5.67497 6.14410 6.57368 6.61740 6.88131 6.94008 7.18814 7.44122 8.76765 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.044723 B = 0.002890 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.926510 B = 9685.858517 C =10115.892915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.022 0.978 4 C -0.534 4.534 5 H 0.058 0.942 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.939 3.061 9 H -0.258 1.258 10 H -0.292 1.292 11 H -0.263 1.263 12 N -0.694 5.694 13 C 0.529 3.471 14 O -0.603 6.603 15 C -0.198 4.198 16 C -0.023 4.023 17 C -0.071 4.071 18 C -0.093 4.093 19 C -0.132 4.132 20 C 0.086 3.914 21 O -0.500 6.500 22 C 0.070 3.930 23 O -0.501 6.501 24 C -0.115 4.115 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.271 0.729 29 H 0.410 0.590 30 H 0.162 0.838 31 H 0.125 0.875 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.410 0.590 35 H 0.408 0.592 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 -5.057 -26.178 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.135 3.865 3 H 0.039 0.961 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.766 3.234 9 H -0.184 1.184 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.342 5.342 13 C 0.320 3.680 14 O -0.488 6.488 15 C -0.218 4.218 16 C -0.043 4.043 17 C -0.071 4.071 18 C -0.111 4.111 19 C -0.150 4.150 20 C 0.040 3.960 21 O -0.314 6.314 22 C 0.024 3.976 23 O -0.314 6.314 24 C -0.133 4.133 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.246 0.754 30 H 0.179 0.821 31 H 0.143 0.857 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.270 0.730 35 H 0.267 0.733 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.566 -3.983 -25.596 25.910 hybrid contribution -1.145 0.134 0.337 1.201 sum -0.579 -3.849 -25.259 25.557 Atomic orbital electron populations 1.22341 0.97695 1.01808 0.99453 1.18778 0.91331 0.93178 0.83243 0.96063 1.21268 1.32398 1.13640 0.89901 0.92346 1.25559 0.96856 0.99340 0.95352 1.69973 1.46677 1.41925 0.98664 0.86004 0.79863 0.80351 0.77165 1.18375 1.21970 1.18820 1.45940 1.64736 1.14420 1.09075 1.18965 0.77801 0.86510 0.84737 1.90743 1.53909 1.17863 1.86246 1.23002 1.05195 1.02059 0.91564 1.22280 0.91724 0.99476 0.90806 1.18886 1.01552 0.94171 0.92530 1.21618 0.96717 0.93171 0.99622 1.21519 1.00045 1.01879 0.91555 1.19130 0.98376 0.89940 0.88541 1.84808 1.37416 1.72882 1.36267 1.18729 1.01119 0.90337 0.87383 1.84880 1.42867 1.74292 1.29336 1.21695 0.98911 1.01157 0.91560 0.91443 0.93557 0.94069 0.92019 0.75448 0.82067 0.85701 0.82789 0.82504 0.73004 0.73299 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.74 8.96 71.98 0.65 -6.09 16 2 C 0.24 11.44 2.15 44.24 0.10 11.54 16 3 H 0.02 1.15 6.63 -2.39 -0.02 1.13 16 4 C -0.53 -29.12 9.31 25.60 0.24 -28.88 16 5 H 0.06 3.36 7.98 -2.91 -0.02 3.34 16 6 C 0.03 1.62 5.45 84.65 0.46 2.08 16 7 N -0.93 -55.93 13.96 21.45 0.30 -55.64 16 8 Si 0.94 44.81 24.37 68.60 1.67 46.49 16 9 H -0.26 -11.51 6.87 99.48 0.68 -10.83 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.26 -12.57 6.53 99.48 0.65 -11.92 16 12 N -0.69 -27.09 5.06 -450.49 -2.28 -29.37 16 13 C 0.53 19.68 7.70 86.32 0.66 20.35 16 14 O -0.60 -27.33 15.89 -4.42 -0.07 -27.40 16 15 C -0.20 -5.10 9.40 23.60 0.22 -4.88 16 16 C -0.02 -0.54 9.45 23.82 0.23 -0.32 16 17 C -0.07 -1.37 5.87 -20.14 -0.12 -1.49 16 18 C -0.09 -1.48 9.40 22.57 0.21 -1.27 16 19 C -0.13 -1.89 9.96 22.30 0.22 -1.67 16 20 C 0.09 1.37 6.72 22.71 0.15 1.53 16 21 O -0.50 -6.89 13.27 -77.57 -1.03 -7.92 16 22 C 0.07 1.21 6.71 22.52 0.15 1.36 16 23 O -0.50 -7.75 13.28 -79.48 -1.06 -8.80 16 24 C -0.11 -2.09 9.72 22.65 0.22 -1.87 16 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.04 1.83 3.27 -2.38 -0.01 1.82 16 28 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.41 13.62 8.52 -92.71 -0.79 12.83 16 30 H 0.16 2.94 6.06 -2.91 -0.02 2.92 16 31 H 0.13 3.26 7.52 -2.92 -0.02 3.24 16 32 H 0.15 1.87 6.15 -2.91 -0.02 1.85 16 33 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.41 1.22 9.06 -74.06 -0.67 0.55 16 35 H 0.41 1.93 9.06 -74.06 -0.67 1.26 16 36 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -76.13 312.13 -0.13 -76.26 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -1.05 Total: 16.00 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 3.39 Total: -9.62 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -1.98 Total: -85.01 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -2.15 Total: -44.12 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.67 Total: 46.49 kcal Total: -76.13 -0.13 -76.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180994693.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.206 kcal (2) G-P(sol) polarization free energy of solvation -76.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds