Wall clock time and date at job start Mon Mar 30 2020 01:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35583 * 116.99780 * 2 1 4 4 C 1.38681 * 120.17748 * 359.97438 * 3 2 1 5 5 C 1.38063 * 120.11395 * 180.02562 * 4 3 2 6 6 C 1.38707 * 120.46038 * 359.97438 * 5 4 3 7 7 C 1.37612 * 120.35386 * 0.02562 * 6 5 4 8 8 C 1.40091 * 119.87751 * 0.02562 * 7 6 5 9 9 C 1.47014 * 120.22609 * 180.02562 * 8 7 6 10 10 O 1.21405 * 119.99917 * 174.13250 * 9 8 7 11 11 C 1.49282 * 120.00010 * 354.12636 * 9 8 7 12 12 O 1.21370 * 120.00148 * 5.17739 * 11 9 8 13 13 N 1.34778 * 120.00089 * 185.17733 * 11 9 8 14 14 C 1.46494 * 120.00334 * 180.02562 * 13 11 9 15 15 H 1.09003 * 109.47324 * 34.99607 * 14 13 11 16 16 C 1.53010 * 109.47141 * 275.00131 * 14 13 11 17 17 C 1.50701 * 109.47425 * 155.00088 * 14 13 11 18 18 H 1.08000 * 119.99956 * 25.10959 * 17 14 13 19 19 C 1.37874 * 119.99688 * 205.11060 * 17 14 13 20 20 N 1.31516 * 119.99701 * 185.01372 * 19 17 14 21 21 Si 1.86801 * 120.00466 * 5.01337 * 19 17 14 22 22 H 1.48504 * 109.46767 * 94.91314 * 21 19 17 23 23 H 1.48501 * 109.47184 * 214.91404 * 21 19 17 24 24 H 1.48492 * 109.46911 * 334.91315 * 21 19 17 25 25 H 1.09003 * 109.46553 * 60.00283 * 1 2 3 26 26 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47088 * 300.00135 * 1 2 3 28 28 H 1.08003 * 119.93989 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.77193 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.81950 * 179.74416 * 6 5 4 31 31 H 1.08000 * 120.06184 * 179.97438 * 7 6 5 32 32 H 0.97001 * 119.99876 * 0.02562 * 13 11 9 33 33 H 1.08994 * 109.47026 * 64.99819 * 16 14 13 34 34 H 1.08994 * 109.47251 * 185.00362 * 16 14 13 35 35 H 1.09001 * 109.46624 * 305.00381 * 16 14 13 36 36 H 0.97001 * 120.00102 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2928 2.3735 -0.0005 5 6 1.9209 3.6029 -0.0011 6 6 3.3055 3.6852 -0.0005 7 6 4.0701 2.5410 0.0000 8 6 3.4479 1.2859 -0.0005 9 6 4.2573 0.0586 0.0006 10 8 3.7182 -1.0239 0.1076 11 6 5.7420 0.1435 -0.1300 12 8 6.2891 1.2268 -0.1425 13 7 6.4748 -0.9829 -0.2340 14 6 7.9318 -0.8996 -0.3616 15 1 8.3006 -0.0590 0.2262 16 6 8.3043 -0.6964 -1.8317 17 6 8.5540 -2.1763 0.1424 18 1 7.9841 -3.0937 0.1368 19 6 9.8508 -2.1732 0.6107 20 7 10.4272 -3.3031 0.9579 21 14 10.7891 -0.5641 0.7518 22 1 10.6621 -0.0368 2.1343 23 1 12.2222 -0.7978 0.4407 24 1 10.2287 0.4214 -0.2073 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2141 2.3191 -0.0014 29 1 1.3301 4.5070 -0.0019 30 1 3.7861 4.6524 -0.0051 31 1 5.1479 2.6105 0.0000 32 1 6.0375 -1.8486 -0.2243 33 1 7.9295 0.2691 -2.1713 34 1 9.3886 -0.7234 -1.9388 35 1 7.8600 -1.4903 -2.4321 36 1 11.3397 -3.3010 1.2870 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183637950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:23 Heat of formation + Delta-G solvation = -70.904656 kcal Electronic energy + Delta-G solvation = -21079.403676 eV Core-core repulsion = 17722.877583 eV Total energy + Delta-G solvation = -3356.526093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72590 -39.45336 -37.82600 -37.41262 -35.13153 -32.42535 -31.47924 -30.23138 -29.93403 -27.61038 -25.61986 -25.23247 -22.92533 -22.05890 -20.50058 -19.69718 -18.16772 -17.71238 -16.63816 -16.48535 -15.99710 -15.73953 -15.39357 -15.03468 -14.78557 -14.28645 -14.18169 -13.63396 -13.37033 -13.24435 -12.65901 -12.55610 -12.36897 -12.30044 -11.96757 -11.57728 -11.37130 -11.29633 -11.17232 -10.84659 -10.73900 -10.54534 -9.85001 -9.25563 -9.13285 -8.82477 -8.70384 -8.38884 -8.28330 -6.23528 -4.27288 0.51522 1.33134 1.90109 3.06742 3.22392 3.32997 3.35998 3.39364 3.39968 3.88784 4.31071 4.52918 4.70721 4.79480 4.90668 4.92454 5.02376 5.15379 5.19701 5.27386 5.29224 5.54661 5.87685 6.01406 6.19230 6.27681 6.38383 6.47513 6.60677 6.67032 6.84302 7.07952 7.18474 7.25637 7.39056 7.43838 8.04367 8.44536 8.64678 8.79539 9.36442 10.88250 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028719 B = 0.004389 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.719042 B = 6378.695373 C = 7044.590570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.288 6.288 3 C 0.184 3.816 4 C -0.236 4.236 5 C -0.046 4.046 6 C -0.181 4.181 7 C -0.027 4.027 8 C -0.198 4.198 9 C 0.387 3.613 10 O -0.413 6.413 11 C 0.475 3.525 12 O -0.534 6.534 13 N -0.668 5.668 14 C 0.229 3.771 15 H 0.054 0.946 16 C -0.150 4.150 17 C -0.535 4.535 18 H 0.081 0.919 19 C 0.082 3.918 20 N -0.887 5.887 21 Si 0.870 3.130 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.254 1.254 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.181 0.819 32 H 0.405 0.595 33 H 0.031 0.969 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.479 12.133 -2.620 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.199 6.199 3 C 0.136 3.864 4 C -0.254 4.254 5 C -0.064 4.064 6 C -0.200 4.200 7 C -0.045 4.045 8 C -0.200 4.200 9 C 0.259 3.741 10 O -0.284 6.284 11 C 0.257 3.743 12 O -0.415 6.415 13 N -0.316 5.316 14 C 0.126 3.874 15 H 0.072 0.928 16 C -0.209 4.209 17 C -0.573 4.573 18 H 0.099 0.901 19 C -0.123 4.123 20 N -0.524 5.524 21 Si 0.696 3.304 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.178 1.178 25 H 0.074 0.926 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.198 0.802 32 H 0.240 0.760 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.099 11.953 -2.502 21.834 hybrid contribution 0.027 0.519 0.159 0.544 sum -18.072 12.472 -2.343 22.083 Atomic orbital electron populations 1.23156 0.78574 1.04314 1.01215 1.86289 1.21030 1.25907 1.86656 1.19333 0.91157 0.84792 0.91093 1.21142 1.00052 0.92091 1.12164 1.21237 0.94993 0.96872 0.93301 1.21176 0.93543 0.99092 1.06153 1.22702 1.03909 0.89663 0.88208 1.19678 0.90031 0.95276 1.15007 1.22443 0.89513 0.88491 0.73619 1.90594 1.74725 1.30280 1.32827 1.20605 0.88455 0.85760 0.79437 1.90433 1.72476 1.27210 1.51379 1.46536 1.09767 1.07953 1.67382 1.19319 0.75261 0.98995 0.93777 0.92773 1.22289 1.01172 0.98934 0.98499 1.20990 0.98957 0.93909 1.43437 0.90124 1.24873 0.97115 0.96442 0.93852 1.69887 1.13951 1.25834 1.42693 0.86953 0.79352 0.84491 0.79588 1.20000 1.20929 1.17820 0.92579 0.87934 0.92545 0.85036 0.85574 0.85245 0.80250 0.75998 0.94995 0.92378 0.93344 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.29 -3.98 8.60 -40.22 -0.35 -4.33 16 3 C 0.18 2.55 6.71 -38.55 -0.26 2.29 16 4 C -0.24 -2.50 9.03 -39.48 -0.36 -2.85 16 5 C -0.05 -0.44 10.03 -39.47 -0.40 -0.84 16 6 C -0.18 -2.03 10.02 -39.64 -0.40 -2.43 16 7 C -0.03 -0.39 9.30 -39.12 -0.36 -0.75 16 8 C -0.20 -3.11 5.89 -104.77 -0.62 -3.73 16 9 C 0.39 6.96 7.16 -31.43 -0.23 6.73 16 10 O -0.41 -7.88 15.33 -16.33 -0.25 -8.13 16 11 C 0.48 9.44 7.80 -11.66 -0.09 9.35 16 12 O -0.53 -11.12 13.08 5.48 0.07 -11.05 16 13 N -0.67 -14.12 5.06 -55.42 -0.28 -14.40 16 14 C 0.23 5.43 2.09 -69.08 -0.14 5.28 16 15 H 0.05 1.36 5.15 -51.93 -0.27 1.09 16 16 C -0.15 -3.26 9.05 37.16 0.34 -2.92 16 17 C -0.54 -14.47 9.06 -34.44 -0.31 -14.78 16 18 H 0.08 2.32 8.02 -52.49 -0.42 1.90 16 19 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 20 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 21 Si 0.87 20.96 26.35 -169.99 -4.48 16.48 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.25 -5.91 5.97 56.52 0.34 -5.58 16 25 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.13 1.01 6.30 -52.48 -0.33 0.68 16 29 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.18 2.81 4.84 -52.53 -0.25 2.55 16 32 H 0.40 8.14 8.04 -40.82 -0.33 7.81 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.27 6.90 -51.93 -0.36 0.91 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 307.41 15.07 4.63 4.63 Total: -1.00 -31.54 307.41 -5.88 -37.41 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.07 Total: 6.06 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.93 Total: -1.31 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.49 Total: -39.77 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.52 Total: -23.51 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.48 Total: 16.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.54 -5.88 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183637950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.492 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds