Wall clock time and date at job start Mon Mar 30 2020 01:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35583 * 116.99780 * 2 1 4 4 C 1.38681 * 120.17748 * 359.97438 * 3 2 1 5 5 C 1.38063 * 120.11395 * 180.02562 * 4 3 2 6 6 C 1.38707 * 120.46038 * 359.97438 * 5 4 3 7 7 C 1.37612 * 120.35386 * 0.02562 * 6 5 4 8 8 C 1.40091 * 119.87751 * 0.02562 * 7 6 5 9 9 C 1.47014 * 120.22609 * 180.02562 * 8 7 6 10 10 O 1.21405 * 119.99917 * 174.13250 * 9 8 7 11 11 C 1.49282 * 120.00010 * 354.12636 * 9 8 7 12 12 O 1.21370 * 120.00148 * 5.17739 * 11 9 8 13 13 N 1.34778 * 120.00089 * 185.17733 * 11 9 8 14 14 C 1.46494 * 120.00334 * 180.02562 * 13 11 9 15 15 H 1.09003 * 109.47324 * 34.99607 * 14 13 11 16 16 C 1.53010 * 109.47141 * 275.00131 * 14 13 11 17 17 C 1.50701 * 109.47425 * 155.00088 * 14 13 11 18 18 H 1.08000 * 119.99956 * 25.10959 * 17 14 13 19 19 C 1.37874 * 119.99688 * 205.11060 * 17 14 13 20 20 N 1.31516 * 119.99701 * 185.01372 * 19 17 14 21 21 Si 1.86801 * 120.00466 * 5.01337 * 19 17 14 22 22 H 1.48504 * 109.46767 * 94.91314 * 21 19 17 23 23 H 1.48501 * 109.47184 * 214.91404 * 21 19 17 24 24 H 1.48492 * 109.46911 * 334.91315 * 21 19 17 25 25 H 1.09003 * 109.46553 * 60.00283 * 1 2 3 26 26 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47088 * 300.00135 * 1 2 3 28 28 H 1.08003 * 119.93989 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.77193 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.81950 * 179.74416 * 6 5 4 31 31 H 1.08000 * 120.06184 * 179.97438 * 7 6 5 32 32 H 0.97001 * 119.99876 * 0.02562 * 13 11 9 33 33 H 1.08994 * 109.47026 * 64.99819 * 16 14 13 34 34 H 1.08994 * 109.47251 * 185.00362 * 16 14 13 35 35 H 1.09001 * 109.46624 * 305.00381 * 16 14 13 36 36 H 0.97001 * 120.00102 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2928 2.3735 -0.0005 5 6 1.9209 3.6029 -0.0011 6 6 3.3055 3.6852 -0.0005 7 6 4.0701 2.5410 0.0000 8 6 3.4479 1.2859 -0.0005 9 6 4.2573 0.0586 0.0006 10 8 3.7182 -1.0239 0.1076 11 6 5.7420 0.1435 -0.1300 12 8 6.2891 1.2268 -0.1425 13 7 6.4748 -0.9829 -0.2340 14 6 7.9318 -0.8996 -0.3616 15 1 8.3006 -0.0590 0.2262 16 6 8.3043 -0.6964 -1.8317 17 6 8.5540 -2.1763 0.1424 18 1 7.9841 -3.0937 0.1368 19 6 9.8508 -2.1732 0.6107 20 7 10.4272 -3.3031 0.9579 21 14 10.7891 -0.5641 0.7518 22 1 10.6621 -0.0368 2.1343 23 1 12.2222 -0.7978 0.4407 24 1 10.2287 0.4214 -0.2073 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2141 2.3191 -0.0014 29 1 1.3301 4.5070 -0.0019 30 1 3.7861 4.6524 -0.0051 31 1 5.1479 2.6105 0.0000 32 1 6.0375 -1.8486 -0.2243 33 1 7.9295 0.2691 -2.1713 34 1 9.3886 -0.7234 -1.9388 35 1 7.8600 -1.4903 -2.4321 36 1 11.3397 -3.3010 1.2870 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183637950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:23 Heat of formation + Delta-G solvation = -92.023734 kcal Electronic energy + Delta-G solvation = -21080.319467 eV Core-core repulsion = 17722.877583 eV Total energy + Delta-G solvation = -3357.441885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.92334 -40.72056 -39.29537 -38.34261 -36.91773 -34.45127 -32.49590 -31.76566 -31.11726 -28.36370 -27.34858 -26.81388 -24.15895 -23.04896 -22.09222 -21.30132 -19.51149 -18.95206 -18.28005 -17.84286 -17.04061 -16.90782 -16.88423 -16.40806 -16.11948 -15.58453 -15.20469 -15.11744 -14.84704 -14.58072 -14.42455 -14.23277 -13.49617 -13.35883 -13.18658 -13.05539 -12.94112 -12.80332 -12.40358 -12.16438 -12.05607 -12.00798 -11.79307 -11.28826 -10.85270 -10.27316 -10.08532 -10.04464 -9.29920 -8.38989 -6.47227 -0.64261 0.42709 0.65240 1.32140 1.36864 1.48401 1.84860 2.05660 2.26177 2.28667 2.79868 2.96644 3.28362 3.68947 3.90170 3.98520 4.25115 4.38502 4.38791 4.39301 4.41675 4.55638 4.69193 4.72882 4.75519 4.95276 5.04390 5.09327 5.28284 5.33536 5.42154 5.47418 5.57675 5.79340 5.89715 6.14050 6.35213 6.53228 6.65616 7.01691 7.21668 8.76345 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028719 B = 0.004389 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.719042 B = 6378.695373 C = 7044.590570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.175 3.825 4 C -0.229 4.229 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.043 4.043 8 C -0.232 4.232 9 C 0.392 3.608 10 O -0.435 6.435 11 C 0.474 3.526 12 O -0.542 6.542 13 N -0.676 5.676 14 C 0.233 3.767 15 H 0.044 0.956 16 C -0.144 4.144 17 C -0.538 4.538 18 H 0.049 0.951 19 C 0.031 3.969 20 N -0.932 5.932 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.274 1.274 24 H -0.241 1.241 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.167 0.833 29 H 0.171 0.829 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.407 0.593 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.717 15.345 -3.033 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.127 3.873 4 C -0.247 4.247 5 C -0.045 4.045 6 C -0.198 4.198 7 C -0.061 4.061 8 C -0.234 4.234 9 C 0.267 3.733 10 O -0.309 6.309 11 C 0.258 3.742 12 O -0.423 6.423 13 N -0.325 5.325 14 C 0.130 3.870 15 H 0.062 0.938 16 C -0.203 4.203 17 C -0.576 4.576 18 H 0.067 0.933 19 C -0.170 4.170 20 N -0.570 5.570 21 Si 0.753 3.247 22 H -0.199 1.199 23 H -0.200 1.200 24 H -0.164 1.164 25 H 0.094 0.906 26 H 0.130 0.870 27 H 0.093 0.907 28 H 0.184 0.816 29 H 0.189 0.811 30 H 0.173 0.827 31 H 0.177 0.823 32 H 0.243 0.757 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.363 15.184 -2.925 25.569 hybrid contribution 0.537 -0.450 0.294 0.760 sum -19.825 14.734 -2.631 24.841 Atomic orbital electron populations 1.23490 0.75968 1.05700 1.03023 1.86244 1.23867 1.26555 1.86554 1.19521 0.90630 0.86031 0.91122 1.21564 1.01634 0.91075 1.10435 1.21762 0.94537 0.98189 0.90039 1.21488 0.94443 0.98904 1.04928 1.22523 1.03278 0.90444 0.89876 1.19594 0.91110 0.94337 1.18370 1.22414 0.88289 0.89514 0.73109 1.90575 1.74552 1.31159 1.34646 1.21082 0.89614 0.85025 0.78490 1.90439 1.73145 1.27397 1.51301 1.46403 1.08947 1.08744 1.68456 1.19112 0.76560 0.96617 0.94736 0.93832 1.22185 1.01179 0.99944 0.96994 1.21168 0.98970 0.94237 1.43188 0.93269 1.25654 0.98112 0.99620 0.93584 1.70002 1.14640 1.28071 1.44291 0.86008 0.78342 0.80616 0.79775 1.19886 1.19964 1.16368 0.90585 0.87037 0.90707 0.81606 0.81135 0.82731 0.82306 0.75746 0.93633 0.92467 0.92675 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -8.54 8.60 -68.08 -0.59 -9.12 16 3 C 0.17 4.55 6.71 22.94 0.15 4.71 16 4 C -0.23 -3.92 9.03 22.33 0.20 -3.72 16 5 C -0.03 -0.40 10.03 22.34 0.22 -0.18 16 6 C -0.18 -3.44 10.02 22.23 0.22 -3.22 16 7 C -0.04 -1.20 9.30 22.57 0.21 -0.99 16 8 C -0.23 -7.25 5.89 -19.96 -0.12 -7.37 16 9 C 0.39 14.51 7.16 27.55 0.20 14.71 16 10 O -0.44 -17.26 15.33 17.41 0.27 -17.00 16 11 C 0.47 19.31 7.80 87.22 0.68 19.99 16 12 O -0.54 -22.83 13.08 -3.31 -0.04 -22.88 16 13 N -0.68 -29.44 5.06 -447.59 -2.27 -31.70 16 14 C 0.23 11.18 2.09 44.25 0.09 11.27 16 15 H 0.04 2.19 5.15 -2.39 -0.01 2.18 16 16 C -0.14 -6.20 9.05 71.99 0.65 -5.55 16 17 C -0.54 -29.95 9.06 25.60 0.23 -29.72 16 18 H 0.05 2.98 8.02 -2.91 -0.02 2.96 16 19 C 0.03 1.73 5.47 84.65 0.46 2.20 16 20 N -0.93 -56.33 13.96 21.45 0.30 -56.03 16 21 Si 0.93 43.41 26.35 68.60 1.81 45.21 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.24 -10.60 5.97 99.48 0.59 -10.01 16 25 H 0.08 0.76 7.66 -2.39 -0.02 0.75 16 26 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 28 H 0.17 1.65 6.30 -2.91 -0.02 1.63 16 29 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 30 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 31 H 0.16 5.01 4.84 -3.57 -0.02 4.99 16 32 H 0.41 17.19 8.04 -92.71 -0.75 16.44 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 2.44 6.90 -2.39 -0.02 2.42 16 35 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -70.63 307.41 4.07 -66.57 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.26 Total: 21.52 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 4.32 Total: 3.42 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -1.97 Total: -87.73 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.36 Total: -48.99 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.81 Total: 45.21 kcal Total: -70.63 4.07 -66.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183637950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.457 kcal (2) G-P(sol) polarization free energy of solvation -70.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds