Wall clock time and date at job start Mon Mar 30 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37102 * 119.99688 * 2 1 4 4 H 1.07998 * 119.99519 * 204.39280 * 3 2 1 5 5 C 1.38955 * 120.00195 * 24.39987 * 3 2 1 6 6 N 1.31415 * 119.99842 * 12.65036 * 5 3 2 7 7 Si 1.86797 * 119.99736 * 192.65518 * 5 3 2 8 8 H 1.48498 * 109.47387 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46880 * 120.00081 * 7 5 3 10 10 H 1.48504 * 109.46696 * 239.99450 * 7 5 3 11 11 C 1.34775 * 120.00019 * 179.97438 * 2 1 3 12 12 O 1.21289 * 119.99811 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00002 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.47187 * 179.97438 * 13 11 2 15 15 C 1.50696 * 109.47187 * 179.97438 * 14 13 11 16 16 C 1.38287 * 119.98303 * 264.72189 * 15 14 13 17 17 C 1.38208 * 120.14181 * 179.68424 * 16 15 14 18 18 C 1.38274 * 120.14725 * 0.64578 * 17 16 15 19 19 C 1.38508 * 120.02745 * 359.63717 * 18 17 16 20 20 C 1.38502 * 119.98759 * 84.99960 * 15 14 13 21 21 O 1.36492 * 131.54245 * 0.02562 * 20 15 14 22 22 C 1.43994 * 105.48945 * 162.68534 * 21 20 15 23 23 O 1.36496 * 131.53939 * 180.02562 * 19 18 17 24 24 H 1.08996 * 109.47226 * 265.86098 * 1 2 3 25 25 H 1.09001 * 109.47229 * 25.85842 * 1 2 3 26 26 H 1.08997 * 109.47183 * 145.86484 * 1 2 3 27 27 H 0.97000 * 119.99328 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47233 * 299.99402 * 13 11 2 29 29 H 1.09006 * 109.47217 * 59.99322 * 13 11 2 30 30 H 1.09001 * 109.46577 * 299.99455 * 14 13 11 31 31 H 1.08994 * 109.47643 * 59.99448 * 14 13 11 32 32 H 1.08003 * 119.92633 * 0.02562 * 16 15 14 33 33 H 1.08008 * 119.92843 * 180.28887 * 17 16 15 34 34 H 1.07998 * 119.99332 * 179.65905 * 18 17 16 35 35 H 1.09003 * 110.56964 * 268.56515 * 22 21 20 36 36 H 1.09000 * 110.69847 * 145.74930 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1581 1.2291 -0.3863 5 6 1.5487 2.3370 0.4971 6 7 0.4347 2.2491 1.1885 7 14 2.3234 4.0074 0.1824 8 1 3.5643 3.8353 -0.6150 9 1 1.3680 4.8629 -0.5662 10 1 2.6540 4.6518 1.4789 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0001 13 6 1.3854 -2.4722 0.0005 14 6 2.3796 -3.6352 0.0005 15 6 1.6262 -4.9402 0.0012 16 6 1.3765 -5.5935 1.1942 17 6 0.6801 -6.7873 1.1992 18 6 0.2416 -7.3404 0.0102 19 6 0.4931 -6.6947 -1.1891 20 6 1.1891 -5.4878 -1.1936 21 8 1.3075 -5.0575 -2.4835 22 6 1.0367 -6.2119 -3.3004 23 8 0.1757 -7.0199 -2.4762 24 1 -0.3633 -0.0742 1.0249 25 1 -0.3634 0.9248 -0.4482 26 1 -0.3633 -0.8506 -0.5767 27 1 0.0145 3.0517 1.5352 28 1 0.7585 -2.5299 0.8903 29 1 0.7590 -2.5302 -0.8897 30 1 3.0062 -3.5774 -0.8895 31 1 3.0064 -3.5775 0.8904 32 1 1.7216 -5.1670 2.1245 33 1 0.4829 -7.2922 2.1334 34 1 -0.2976 -8.2762 0.0165 35 1 1.9597 -6.7452 -3.5278 36 1 0.5264 -5.9227 -4.2191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184369149.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:25 Heat of formation + Delta-G solvation = -67.371210 kcal Electronic energy + Delta-G solvation = -21079.805590 eV Core-core repulsion = 17723.432719 eV Total energy + Delta-G solvation = -3356.372871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.19107 -38.63960 -37.89805 -36.35868 -34.72703 -33.31577 -31.55842 -29.98232 -29.31644 -26.30548 -25.88266 -25.04482 -23.50301 -22.93552 -21.23867 -18.65103 -18.08348 -17.61781 -17.17463 -16.79656 -16.38612 -15.77520 -14.92721 -14.60785 -14.53476 -14.22599 -14.04629 -13.80632 -13.23104 -13.08549 -12.98579 -12.72949 -12.36659 -12.09064 -11.62677 -11.47856 -11.33146 -11.19859 -10.93659 -10.83959 -10.81023 -10.52389 -10.28425 -10.16748 -8.97357 -8.72608 -8.28438 -8.10527 -7.60130 -6.27805 -3.83742 1.12342 1.17824 2.72931 3.17933 3.27837 3.35089 3.40436 3.54871 3.97518 4.18140 4.40839 4.57489 4.75950 4.86348 5.00311 5.07116 5.16563 5.21036 5.22644 5.43835 5.63586 5.68523 5.86651 6.02623 6.10525 6.14467 6.22986 6.30899 6.41559 6.47567 6.63065 6.66255 6.90824 7.10832 7.24095 7.61161 8.20472 8.54532 9.24428 9.48817 10.05595 10.77402 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031626 B = 0.003821 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.140492 B = 7326.861207 C = 7579.579701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.449 5.449 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.884 5.884 7 Si 0.925 3.075 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.449 3.551 12 O -0.592 6.592 13 C -0.121 4.121 14 C -0.060 4.060 15 C -0.052 4.052 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.111 4.111 19 C 0.028 3.972 20 C 0.034 3.966 21 O -0.301 6.301 22 C 0.212 3.788 23 O -0.313 6.313 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.025 0.975 27 H 0.266 0.734 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 -17.486 -3.224 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.168 5.168 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.523 5.523 7 Si 0.752 3.248 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.237 3.763 12 O -0.477 6.477 13 C -0.162 4.162 14 C -0.098 4.098 15 C -0.053 4.053 16 C -0.126 4.126 17 C -0.127 4.127 18 C -0.130 4.130 19 C -0.016 4.016 20 C -0.010 4.010 21 O -0.217 6.217 22 C 0.100 3.900 23 O -0.229 6.229 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.961 -17.254 -3.346 17.823 hybrid contribution 0.000 0.860 -0.336 0.924 sum -2.960 -16.393 -3.681 17.060 Atomic orbital electron populations 1.21460 0.81322 0.99837 1.00520 1.43593 1.05440 1.04828 1.62940 1.19696 1.00560 0.84263 1.38766 0.88487 1.25341 0.96662 1.00091 0.95264 1.70010 1.19326 1.29402 1.33601 0.85887 0.79178 0.81593 0.78190 1.19247 1.20713 1.20774 1.20076 0.88029 0.84905 0.83292 1.90500 1.14051 1.87280 1.55866 1.21484 0.98521 0.93313 1.02863 1.20273 0.96632 0.88306 1.04541 1.19227 0.98948 0.98117 0.89000 1.20961 0.99315 0.95285 0.97008 1.20896 0.98704 0.96065 0.97070 1.20006 1.03807 1.00678 0.88508 1.19817 1.00265 0.95339 0.86171 1.19647 1.01545 0.93827 0.86000 1.87436 1.87503 1.33055 1.13693 1.25605 0.93480 0.78670 0.92246 1.87331 1.58823 1.62914 1.13864 0.93063 0.90830 0.95613 0.92393 0.90269 0.90572 0.90210 0.89899 0.84297 0.84586 0.85104 0.90122 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.60 8.44 59.85 0.51 3.10 16 2 N -0.45 -11.89 3.01 -122.19 -0.37 -12.26 16 3 C -0.30 -8.73 9.24 -14.93 -0.14 -8.86 16 4 H 0.10 2.91 7.45 -52.49 -0.39 2.51 16 5 C 0.03 0.79 5.04 -17.46 -0.09 0.70 16 6 N -0.88 -24.05 10.83 55.50 0.60 -23.45 16 7 Si 0.92 21.11 29.57 -169.99 -5.03 16.08 16 8 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 C 0.45 11.24 7.63 -10.99 -0.08 11.16 16 12 O -0.59 -16.68 15.69 5.55 0.09 -16.59 16 13 C -0.12 -2.33 4.29 -27.89 -0.12 -2.45 16 14 C -0.06 -1.03 4.63 -27.89 -0.13 -1.16 16 15 C -0.05 -0.76 5.14 -104.51 -0.54 -1.30 16 16 C -0.11 -1.29 9.67 -39.57 -0.38 -1.67 16 17 C -0.11 -1.11 10.04 -39.58 -0.40 -1.51 16 18 C -0.11 -1.23 10.06 -39.47 -0.40 -1.63 16 19 C 0.03 0.38 7.15 -39.08 -0.28 0.10 16 20 C 0.03 0.51 6.83 -39.08 -0.27 0.24 16 21 O -0.30 -4.45 11.39 -45.66 -0.52 -4.97 16 22 C 0.21 2.24 8.89 101.05 0.90 3.14 16 23 O -0.31 -3.97 11.40 -45.67 -0.52 -4.49 16 24 H 0.05 1.20 7.83 -51.93 -0.41 0.79 16 25 H 0.07 1.79 6.80 -51.93 -0.35 1.43 16 26 H 0.03 0.50 6.61 -51.93 -0.34 0.16 16 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 29 H 0.08 1.41 7.41 -51.93 -0.38 1.03 16 30 H 0.08 1.48 8.08 -51.93 -0.42 1.06 16 31 H 0.08 1.42 8.01 -51.93 -0.42 1.00 16 32 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -33.32 309.34 -6.89 -40.20 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.38 Total: 0.96 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.42 Total: -0.14 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.23 Total: -35.71 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.95 Total: -26.06 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.32 -6.89 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184369149.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.167 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds