Wall clock time and date at job start Mon Mar 30 2020 02:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37102 * 119.99688 * 2 1 4 4 H 1.07998 * 119.99519 * 204.39280 * 3 2 1 5 5 C 1.38955 * 120.00195 * 24.39987 * 3 2 1 6 6 N 1.31415 * 119.99842 * 12.65036 * 5 3 2 7 7 Si 1.86797 * 119.99736 * 192.65518 * 5 3 2 8 8 H 1.48498 * 109.47387 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46880 * 120.00081 * 7 5 3 10 10 H 1.48504 * 109.46696 * 239.99450 * 7 5 3 11 11 C 1.34775 * 120.00019 * 179.97438 * 2 1 3 12 12 O 1.21289 * 119.99811 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00002 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.47187 * 179.97438 * 13 11 2 15 15 C 1.50696 * 109.47187 * 179.97438 * 14 13 11 16 16 C 1.38287 * 119.98303 * 264.72189 * 15 14 13 17 17 C 1.38208 * 120.14181 * 179.68424 * 16 15 14 18 18 C 1.38274 * 120.14725 * 0.64578 * 17 16 15 19 19 C 1.38508 * 120.02745 * 359.63717 * 18 17 16 20 20 C 1.38502 * 119.98759 * 84.99960 * 15 14 13 21 21 O 1.36492 * 131.54245 * 0.02562 * 20 15 14 22 22 C 1.43994 * 105.48945 * 162.68534 * 21 20 15 23 23 O 1.36496 * 131.53939 * 180.02562 * 19 18 17 24 24 H 1.08996 * 109.47226 * 265.86098 * 1 2 3 25 25 H 1.09001 * 109.47229 * 25.85842 * 1 2 3 26 26 H 1.08997 * 109.47183 * 145.86484 * 1 2 3 27 27 H 0.97000 * 119.99328 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47233 * 299.99402 * 13 11 2 29 29 H 1.09006 * 109.47217 * 59.99322 * 13 11 2 30 30 H 1.09001 * 109.46577 * 299.99455 * 14 13 11 31 31 H 1.08994 * 109.47643 * 59.99448 * 14 13 11 32 32 H 1.08003 * 119.92633 * 0.02562 * 16 15 14 33 33 H 1.08008 * 119.92843 * 180.28887 * 17 16 15 34 34 H 1.07998 * 119.99332 * 179.65905 * 18 17 16 35 35 H 1.09003 * 110.56964 * 268.56515 * 22 21 20 36 36 H 1.09000 * 110.69847 * 145.74930 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1581 1.2291 -0.3863 5 6 1.5487 2.3370 0.4971 6 7 0.4347 2.2491 1.1885 7 14 2.3234 4.0074 0.1824 8 1 3.5643 3.8353 -0.6150 9 1 1.3680 4.8629 -0.5662 10 1 2.6540 4.6518 1.4789 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0001 13 6 1.3854 -2.4722 0.0005 14 6 2.3796 -3.6352 0.0005 15 6 1.6262 -4.9402 0.0012 16 6 1.3765 -5.5935 1.1942 17 6 0.6801 -6.7873 1.1992 18 6 0.2416 -7.3404 0.0102 19 6 0.4931 -6.6947 -1.1891 20 6 1.1891 -5.4878 -1.1936 21 8 1.3075 -5.0575 -2.4835 22 6 1.0367 -6.2119 -3.3004 23 8 0.1757 -7.0199 -2.4762 24 1 -0.3633 -0.0742 1.0249 25 1 -0.3634 0.9248 -0.4482 26 1 -0.3633 -0.8506 -0.5767 27 1 0.0145 3.0517 1.5352 28 1 0.7585 -2.5299 0.8903 29 1 0.7590 -2.5302 -0.8897 30 1 3.0062 -3.5774 -0.8895 31 1 3.0064 -3.5775 0.8904 32 1 1.7216 -5.1670 2.1245 33 1 0.4829 -7.2922 2.1334 34 1 -0.2976 -8.2762 0.0165 35 1 1.9597 -6.7452 -3.5278 36 1 0.5264 -5.9227 -4.2191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184369149.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:24 Heat of formation + Delta-G solvation = -88.611440 kcal Electronic energy + Delta-G solvation = -21080.726636 eV Core-core repulsion = 17723.432719 eV Total energy + Delta-G solvation = -3357.293917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.11440 -40.46182 -38.99785 -37.33253 -36.72493 -34.68155 -33.60487 -30.87709 -30.61287 -28.22471 -26.80840 -26.70119 -25.12003 -23.85697 -22.39515 -20.51770 -19.00035 -18.90623 -18.53821 -18.24253 -17.70969 -17.13996 -16.64779 -16.36216 -15.93891 -15.49325 -15.24748 -14.99092 -14.65077 -14.24865 -14.17151 -13.94665 -13.79947 -13.42463 -13.28880 -13.17433 -12.95931 -12.92732 -12.64557 -12.34350 -12.12538 -11.93306 -11.91643 -11.76115 -11.01750 -10.39492 -9.68217 -9.62795 -9.04301 -8.35101 -6.00417 0.20470 0.22454 1.35628 1.40298 1.54688 1.85607 2.02144 2.27733 2.57144 2.61605 3.07375 3.08408 3.45487 3.82031 3.87876 3.97693 4.10244 4.19986 4.25233 4.32145 4.36764 4.40089 4.52783 4.56064 4.77744 4.87653 5.01201 5.05479 5.17439 5.24205 5.33106 5.41264 5.43859 5.53587 5.56850 6.10090 6.17854 6.47823 7.15882 7.45942 8.02741 8.68636 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031626 B = 0.003821 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.140492 B = 7326.861207 C = 7579.579701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.466 5.466 3 C -0.347 4.347 4 H 0.069 0.931 5 C -0.002 4.002 6 N -0.897 5.897 7 Si 0.990 3.010 8 H -0.274 1.274 9 H -0.264 1.264 10 H -0.274 1.274 11 C 0.437 3.563 12 O -0.633 6.633 13 C -0.105 4.105 14 C -0.049 4.049 15 C -0.072 4.072 16 C -0.109 4.109 17 C -0.095 4.095 18 C -0.105 4.105 19 C 0.014 3.986 20 C 0.010 3.990 21 O -0.331 6.331 22 C 0.204 3.796 23 O -0.322 6.322 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.274 0.726 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.154 0.846 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.100 0.900 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -18.739 -2.563 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.184 5.184 3 C -0.475 4.475 4 H 0.087 0.913 5 C -0.204 4.204 6 N -0.536 5.536 7 Si 0.813 3.187 8 H -0.199 1.199 9 H -0.189 1.189 10 H -0.199 1.199 11 C 0.227 3.773 12 O -0.521 6.521 13 C -0.145 4.145 14 C -0.086 4.086 15 C -0.073 4.073 16 C -0.127 4.127 17 C -0.113 4.113 18 C -0.124 4.124 19 C -0.030 4.030 20 C -0.034 4.034 21 O -0.248 6.248 22 C 0.093 3.907 23 O -0.238 6.238 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.172 0.828 33 H 0.193 0.807 34 H 0.177 0.823 35 H 0.118 0.882 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.404 -18.521 -2.685 19.226 hybrid contribution 0.423 1.184 -0.530 1.365 sum -3.981 -17.336 -3.215 18.076 Atomic orbital electron populations 1.21410 0.79484 1.00545 1.00622 1.43885 1.06729 1.04799 1.63014 1.19653 1.00403 0.86264 1.41147 0.91278 1.26107 0.97037 1.02973 0.94257 1.70068 1.19727 1.30751 1.33008 0.84932 0.78314 0.77122 0.78285 1.19905 1.18926 1.19920 1.21084 0.87976 0.86418 0.81837 1.90457 1.16117 1.88149 1.57395 1.21389 0.98500 0.90613 1.03980 1.20053 0.96126 0.89396 1.03063 1.19095 1.00447 0.97440 0.90333 1.21228 0.99126 0.95858 0.96507 1.21330 0.96658 0.94942 0.98351 1.20489 1.02780 1.01294 0.87816 1.20131 1.00642 0.95198 0.87063 1.19873 1.02621 0.94864 0.86005 1.87381 1.87910 1.35167 1.14338 1.26042 0.94623 0.77819 0.92187 1.87298 1.59428 1.63235 1.13886 0.93564 0.92420 0.92051 0.91643 0.88323 0.89753 0.92720 0.90398 0.82798 0.80671 0.82330 0.88214 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.64 8.44 127.77 1.08 6.72 16 2 N -0.47 -25.21 3.01 -658.90 -1.98 -27.19 16 3 C -0.35 -20.46 9.24 84.04 0.78 -19.69 16 4 H 0.07 4.36 7.45 -2.91 -0.02 4.34 16 5 C 0.00 -0.11 5.04 84.93 0.43 0.32 16 6 N -0.90 -48.54 10.83 21.67 0.23 -48.31 16 7 Si 0.99 43.36 29.57 68.60 2.03 45.39 16 8 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 9 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 C 0.44 22.51 7.63 87.66 0.67 23.17 16 12 O -0.63 -37.34 15.69 -3.06 -0.05 -37.38 16 13 C -0.10 -4.04 4.29 29.85 0.13 -3.91 16 14 C -0.05 -1.70 4.63 29.85 0.14 -1.56 16 15 C -0.07 -2.07 5.14 -19.79 -0.10 -2.17 16 16 C -0.11 -2.37 9.67 22.27 0.22 -2.15 16 17 C -0.10 -1.57 10.04 22.27 0.22 -1.35 16 18 C -0.11 -1.98 10.06 22.34 0.22 -1.76 16 19 C 0.01 0.35 7.15 22.59 0.16 0.51 16 20 C 0.01 0.31 6.83 22.59 0.15 0.46 16 21 O -0.33 -9.86 11.39 -75.96 -0.87 -10.73 16 22 C 0.20 4.13 8.89 113.37 1.01 5.14 16 23 O -0.32 -7.72 11.40 -76.00 -0.87 -8.58 16 24 H 0.05 2.14 7.83 -2.39 -0.02 2.13 16 25 H 0.06 2.80 6.80 -2.39 -0.02 2.79 16 26 H 0.06 2.34 6.61 -2.39 -0.02 2.32 16 27 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 28 H 0.10 3.41 8.11 -2.39 -0.02 3.39 16 29 H 0.08 3.11 7.41 -2.38 -0.02 3.09 16 30 H 0.05 2.15 8.08 -2.39 -0.02 2.13 16 31 H 0.08 2.73 8.01 -2.39 -0.02 2.72 16 32 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.16 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -74.43 309.34 4.70 -69.73 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.09 Total: 13.35 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.10 Total: 3.72 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -1.75 Total: -75.50 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -1.78 Total: -56.70 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -74.43 4.70 -69.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184369149.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.879 kcal (2) G-P(sol) polarization free energy of solvation -74.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds