Wall clock time and date at job start Mon Mar 30 2020 02:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35990 * 116.99798 * 2 1 4 4 C 1.38412 * 119.93867 * 359.97438 * 3 2 1 5 5 C 1.38244 * 119.89678 * 180.02562 * 4 3 2 6 6 C 1.38107 * 120.01952 * 359.90232 * 5 4 3 7 7 C 1.38592 * 120.41750 * 0.04115 * 6 5 4 8 8 C 1.38227 * 119.86636 * 0.12259 * 7 6 5 9 9 O 1.35937 * 121.82452 * 179.73446 * 8 7 6 10 10 C 1.42822 * 117.86248 * 17.20571 * 9 8 7 11 11 C 1.53410 * 108.36850 * 310.86680 * 10 9 8 12 12 H 1.08998 * 109.69850 * 304.95016 * 11 10 9 13 13 N 1.46493 * 109.70269 * 184.38192 * 11 10 9 14 14 C 1.34776 * 119.99966 * 85.00135 * 13 11 10 15 15 O 1.21690 * 119.99988 * 0.02562 * 14 13 11 16 16 C 1.46373 * 120.00007 * 179.97438 * 14 13 11 17 17 H 1.07991 * 120.00489 * 350.83606 * 16 14 13 18 18 C 1.40051 * 119.99811 * 170.82742 * 16 14 13 19 19 N 1.30673 * 120.00226 * 166.32486 * 18 16 14 20 20 Si 1.86797 * 120.00125 * 346.32789 * 18 16 14 21 21 H 1.48507 * 109.47171 * 89.99783 * 20 18 16 22 22 H 1.48502 * 109.47183 * 209.99597 * 20 18 16 23 23 H 1.48498 * 109.47316 * 329.99994 * 20 18 16 24 24 C 1.50782 * 118.72998 * 180.37132 * 7 6 5 25 25 H 1.08994 * 109.47028 * 299.99328 * 1 2 3 26 26 H 1.08993 * 109.47252 * 60.00180 * 1 2 3 27 27 H 1.09004 * 109.46492 * 179.97438 * 1 2 3 28 28 H 1.08009 * 120.04880 * 0.04369 * 4 3 2 29 29 H 1.08006 * 119.99012 * 179.91406 * 5 4 3 30 30 H 1.07998 * 119.78775 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.69216 * 191.14661 * 10 9 8 32 32 H 1.09003 * 109.71780 * 70.60341 * 10 9 8 33 33 H 0.97000 * 120.00584 * 265.00340 * 13 11 10 34 34 H 0.97006 * 119.99716 * 1.86694 * 19 18 16 35 35 H 1.09000 * 109.42863 * 77.56210 * 24 7 6 36 36 H 1.08994 * 109.43974 * 317.69735 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2913 2.3717 -0.0005 5 6 1.9198 3.6030 -0.0011 6 6 3.2990 3.6748 0.0010 7 6 4.0618 2.5177 0.0027 8 6 3.4400 1.2833 -0.0002 9 8 4.1490 0.1235 -0.0040 10 6 5.5265 0.1821 0.3685 11 6 6.1935 1.3147 -0.4226 12 1 6.0300 1.1633 -1.4895 13 7 7.6310 1.3338 -0.1410 14 6 8.4646 0.5352 -0.8365 15 8 8.0232 -0.2014 -1.6987 16 6 9.9010 0.5548 -0.5555 17 1 10.3130 1.3083 0.0992 18 6 10.7411 -0.4040 -1.1356 19 7 12.0370 -0.2386 -1.1096 20 14 10.0090 -1.9191 -1.9467 21 1 9.7523 -1.6371 -3.3819 22 1 10.9606 -3.0529 -1.8275 23 1 8.7322 -2.2717 -1.2755 24 6 5.5646 2.6404 0.0135 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 0.2127 2.3149 -0.0002 29 1 1.3320 4.5091 -0.0029 30 1 3.7860 4.6387 0.0010 31 1 6.0114 -0.7653 0.1328 32 1 5.6105 0.3815 1.4368 33 1 7.9829 1.9213 0.5460 34 1 12.4185 0.5345 -0.6649 35 1 5.9010 2.8875 1.0204 36 1 5.8690 3.4297 -0.6738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185097214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:46 Heat of formation + Delta-G solvation = -126.511383 kcal Electronic energy + Delta-G solvation = -21247.819363 eV Core-core repulsion = 17888.881981 eV Total energy + Delta-G solvation = -3358.937381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.99163 -40.30724 -39.42674 -37.90900 -36.22328 -35.07019 -33.14566 -31.39811 -30.33994 -28.22421 -27.97896 -26.77179 -24.48157 -23.14104 -21.82353 -21.26680 -20.08274 -19.13491 -18.40966 -17.94344 -17.26908 -17.12859 -16.62254 -16.15622 -15.85999 -15.79135 -15.54534 -15.09387 -14.91462 -14.71141 -14.32006 -14.20344 -14.13263 -13.94383 -13.02058 -12.84636 -12.65729 -12.60662 -12.33771 -12.13527 -11.89744 -11.82686 -11.73755 -11.40959 -11.13509 -10.16657 -9.85068 -9.50558 -9.23842 -8.84410 -7.14192 0.24878 0.43579 1.42986 1.51899 1.92557 2.12589 2.19400 2.34630 2.38697 2.67558 2.82733 3.23306 3.57872 3.68788 3.82116 3.93023 4.03260 4.09934 4.26746 4.37729 4.41015 4.42503 4.49412 4.57571 4.71874 4.73201 4.86217 4.91577 5.20436 5.37807 5.44122 5.51356 5.52701 5.73568 5.84880 5.92852 6.13394 6.62250 6.62825 7.12573 7.98335 8.09469 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031759 B = 0.004292 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.431500 B = 6521.745289 C = 7218.525182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.080 3.920 4 C -0.178 4.178 5 C -0.106 4.106 6 C -0.120 4.120 7 C -0.128 4.128 8 C 0.063 3.937 9 O -0.326 6.326 10 C 0.058 3.942 11 C 0.122 3.878 12 H 0.060 0.940 13 N -0.730 5.730 14 C 0.549 3.451 15 O -0.642 6.642 16 C -0.616 4.616 17 H 0.071 0.929 18 C 0.034 3.966 19 N -0.845 5.845 20 Si 1.149 2.851 21 H -0.294 1.294 22 H -0.300 1.300 23 H -0.291 1.291 24 C -0.073 4.073 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.154 0.846 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.405 0.595 34 H 0.280 0.720 35 H 0.106 0.894 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.877 9.376 6.007 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.035 3.965 4 C -0.196 4.196 5 C -0.123 4.123 6 C -0.138 4.138 7 C -0.130 4.130 8 C 0.018 3.982 9 O -0.240 6.240 10 C -0.018 4.018 11 C 0.015 3.985 12 H 0.078 0.922 13 N -0.382 5.382 14 C 0.356 3.644 15 O -0.536 6.536 16 C -0.653 4.653 17 H 0.090 0.910 18 C -0.182 4.182 19 N -0.473 5.473 20 Si 0.979 3.021 21 H -0.222 1.222 22 H -0.230 1.230 23 H -0.219 1.219 24 C -0.110 4.110 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.130 0.870 28 H 0.180 0.820 29 H 0.181 0.819 30 H 0.171 0.829 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.240 0.760 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.742 7.215 4.618 24.302 hybrid contribution 0.273 1.740 1.143 2.100 sum -22.469 8.955 5.761 24.864 Atomic orbital electron populations 1.23354 0.76398 1.05366 1.02476 1.86155 1.23465 1.26632 1.89124 1.18755 0.89107 0.86312 1.02331 1.21390 1.01136 0.90854 1.06258 1.21242 0.94247 0.97946 0.98907 1.21150 0.94184 0.97414 1.01068 1.19747 0.95851 0.92021 1.05378 1.18518 0.89045 0.86065 1.04554 1.86069 1.23496 1.29878 1.84566 1.23332 0.78515 1.00803 0.99175 1.21188 0.81979 0.95963 0.99322 0.92219 1.45415 1.04924 1.46044 1.41840 1.18339 0.87309 0.78609 0.80168 1.90234 1.78578 1.46031 1.38773 1.22155 0.91750 1.17955 1.33399 0.91046 1.27680 0.93785 1.03619 0.93073 1.70646 1.12488 1.30519 1.33621 0.82214 0.72411 0.71439 0.76049 1.22176 1.22959 1.21852 1.20721 0.89799 0.96161 1.04302 0.91094 0.91427 0.87041 0.82005 0.81871 0.82851 0.89814 0.90371 0.75965 0.90948 0.87620 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.49 10.21 -78.05 -0.80 -10.29 16 3 C 0.08 2.23 6.70 22.63 0.15 2.38 16 4 C -0.18 -3.42 9.03 22.31 0.20 -3.22 16 5 C -0.11 -1.74 10.04 22.24 0.22 -1.52 16 6 C -0.12 -2.35 9.66 22.32 0.22 -2.13 16 7 C -0.13 -3.43 5.75 -19.76 -0.11 -3.54 16 8 C 0.06 2.03 6.48 22.58 0.15 2.18 16 9 O -0.33 -12.48 10.00 -77.46 -0.77 -13.25 16 10 C 0.06 2.16 6.62 72.12 0.48 2.64 16 11 C 0.12 4.46 2.68 45.16 0.12 4.58 16 12 H 0.06 2.60 7.61 -2.39 -0.02 2.58 16 13 N -0.73 -29.64 5.10 -446.06 -2.27 -31.91 16 14 C 0.55 28.90 7.44 86.36 0.64 29.54 16 15 O -0.64 -37.46 12.00 -4.32 -0.05 -37.51 16 16 C -0.62 -34.36 9.92 24.83 0.25 -34.11 16 17 H 0.07 3.88 8.06 -2.92 -0.02 3.86 16 18 C 0.03 1.95 5.52 85.30 0.47 2.42 16 19 N -0.84 -48.51 13.65 21.84 0.30 -48.21 16 20 Si 1.15 60.33 26.36 68.60 1.81 62.14 16 21 H -0.29 -15.70 7.11 99.48 0.71 -14.99 16 22 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.29 -15.85 6.53 99.48 0.65 -15.20 16 24 C -0.07 -1.91 5.35 29.90 0.16 -1.75 16 25 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 26 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 27 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.16 2.00 6.28 -2.91 -0.02 1.98 16 29 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 30 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.40 13.91 8.55 -92.71 -0.79 13.11 16 34 H 0.28 15.43 8.72 -92.70 -0.81 14.62 16 35 H 0.11 2.30 8.10 -2.39 -0.02 2.28 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -73.45 304.37 2.49 -70.96 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.22 Total: 9.22 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.05 Total: -1.15 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -1.98 Total: -80.12 kcal Atomic # 8 Polarization: -59.43 SS G_CDS: -1.62 Total: -61.05 kcal Atomic # 14 Polarization: 60.33 SS G_CDS: 1.81 Total: 62.14 kcal Total: -73.45 2.49 -70.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185097214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.549 kcal (2) G-P(sol) polarization free energy of solvation -73.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds