Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36000 * 117.00010 * 2 1 4 4 C 1.38410 * 119.93894 * 359.97438 * 3 2 1 5 5 C 1.38239 * 119.89341 * 180.02562 * 4 3 2 6 6 C 1.38102 * 120.02454 * 0.07693 * 5 4 3 7 7 C 1.38593 * 120.41918 * 0.02562 * 6 5 4 8 8 C 1.38231 * 119.86076 * 359.84706 * 7 6 5 9 9 O 1.35933 * 121.83321 * 180.31405 * 8 7 6 10 10 C 1.42820 * 117.84967 * 342.88688 * 9 8 7 11 11 C 1.53414 * 108.36545 * 49.12959 * 10 9 8 12 12 H 1.09003 * 109.69483 * 54.99359 * 11 10 9 13 13 N 1.46499 * 109.69994 * 175.59299 * 11 10 9 14 14 C 1.34780 * 119.99987 * 273.84145 * 13 11 10 15 15 O 1.21691 * 119.99770 * 0.02562 * 14 13 11 16 16 C 1.46372 * 119.99697 * 180.02562 * 14 13 11 17 17 H 1.07996 * 120.00187 * 353.93872 * 16 14 13 18 18 C 1.40054 * 119.99640 * 173.94094 * 16 14 13 19 19 N 1.30673 * 119.99999 * 6.14857 * 18 16 14 20 20 Si 1.86798 * 119.99843 * 186.15099 * 18 16 14 21 21 H 1.48504 * 109.47166 * 94.98540 * 20 18 16 22 22 H 1.48504 * 109.47129 * 214.98439 * 20 18 16 23 23 H 1.48503 * 109.47213 * 334.98289 * 20 18 16 24 24 C 1.50776 * 118.73469 * 179.80805 * 7 6 5 25 25 H 1.09004 * 109.46945 * 300.00463 * 1 2 3 26 26 H 1.09003 * 109.47259 * 59.99698 * 1 2 3 27 27 H 1.09001 * 109.47433 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.05354 * 359.97438 * 4 3 2 29 29 H 1.08006 * 119.98840 * 180.02562 * 5 4 3 30 30 H 1.07998 * 119.79113 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.68433 * 289.41041 * 10 9 8 32 32 H 1.09000 * 109.68950 * 168.84765 * 10 9 8 33 33 H 0.97000 * 119.99941 * 93.83888 * 13 11 10 34 34 H 0.97000 * 119.99847 * 180.02562 * 19 18 16 35 35 H 1.08993 * 109.43633 * 42.22179 * 24 7 6 36 36 H 1.09009 * 109.42776 * 282.36648 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2913 2.3718 -0.0005 5 6 1.9199 3.6030 -0.0011 6 6 3.2991 3.6748 -0.0027 7 6 4.0620 2.5177 -0.0043 8 6 3.4400 1.2832 -0.0011 9 8 4.1487 0.1233 0.0038 10 6 5.5270 0.1820 -0.3660 11 6 6.1923 1.3145 0.4268 12 1 6.0258 1.1633 1.4934 13 7 7.6305 1.3333 0.1485 14 6 8.4652 0.5516 0.8618 15 8 8.0242 -0.1702 1.7366 16 6 9.9022 0.5709 0.5840 17 1 10.2826 1.1354 -0.2545 18 6 10.7839 -0.1426 1.4057 19 7 10.3161 -0.9208 2.3454 20 14 12.6284 0.0183 1.1583 21 1 13.1635 1.0507 2.0820 22 1 13.2813 -1.2852 1.4409 23 1 12.9067 0.4174 -0.2448 24 6 5.5647 2.6403 -0.0104 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2128 2.3151 -0.0014 29 1 1.3322 4.5091 -0.0011 30 1 3.7862 4.6386 -0.0027 31 1 5.6124 0.3821 -1.4340 32 1 6.0113 -0.7654 -0.1295 33 1 7.9820 1.9084 -0.5491 34 1 10.9267 -1.4147 2.9147 35 1 5.8671 3.4292 0.6781 36 1 5.9042 2.8879 -1.0163 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185097235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = -89.191948 kcal Electronic energy + Delta-G solvation = -21130.721343 eV Core-core repulsion = 17773.402254 eV Total energy + Delta-G solvation = -3357.319089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76636 -38.87215 -37.27353 -36.75261 -34.29376 -32.49978 -31.52972 -30.18378 -28.89008 -27.31037 -26.11524 -25.44260 -23.15395 -22.02925 -20.15787 -19.54009 -18.00907 -17.39288 -17.12352 -16.47961 -15.88206 -15.44622 -15.03229 -14.83836 -14.74718 -14.09553 -14.01020 -13.79758 -13.32936 -12.98775 -12.73267 -12.37291 -12.32790 -12.11003 -11.60725 -11.52854 -11.26104 -11.10661 -10.98428 -10.87323 -10.51611 -10.41682 -10.28445 -10.20274 -8.88910 -8.47463 -7.81928 -7.67730 -7.56657 -6.23637 -4.68682 1.29180 1.48456 3.12200 3.19517 3.22894 3.25916 3.53190 3.74940 4.07497 4.51539 4.56930 4.77416 4.92946 5.02591 5.05327 5.08978 5.11749 5.19433 5.36767 5.37923 5.49222 5.58623 5.71364 5.75461 5.86126 5.98462 6.19948 6.34614 6.37766 6.52769 6.54112 6.72051 7.20303 7.40063 7.76499 7.83988 7.99995 8.27288 8.98356 9.44139 10.54275 10.72078 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037821 B = 0.003781 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.154101 B = 7404.067715 C = 7922.711868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.305 6.305 3 C 0.096 3.904 4 C -0.184 4.184 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.119 4.119 8 C 0.112 3.888 9 O -0.303 6.303 10 C 0.052 3.948 11 C 0.123 3.877 12 H 0.091 0.909 13 N -0.757 5.757 14 C 0.553 3.447 15 O -0.576 6.576 16 C -0.545 4.545 17 H 0.069 0.931 18 C 0.087 3.913 19 N -0.765 5.765 20 Si 0.909 3.091 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.084 4.084 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.383 0.617 34 H 0.269 0.731 35 H 0.087 0.913 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.759 8.005 -6.658 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.218 6.218 3 C 0.050 3.950 4 C -0.203 4.203 5 C -0.138 4.138 6 C -0.138 4.138 7 C -0.120 4.120 8 C 0.066 3.934 9 O -0.215 6.215 10 C -0.025 4.025 11 C 0.016 3.984 12 H 0.109 0.891 13 N -0.413 5.413 14 C 0.357 3.643 15 O -0.458 6.458 16 C -0.582 4.582 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.394 5.394 20 Si 0.733 3.267 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.122 4.122 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.116 0.884 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.215 0.785 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.021 6.917 -5.794 18.387 hybrid contribution 0.934 0.708 -0.505 1.276 sum -15.087 7.625 -6.299 18.040 Atomic orbital electron populations 1.23029 0.79058 1.03759 1.00916 1.86207 1.20566 1.26058 1.88996 1.18447 0.89404 0.85095 1.02019 1.20957 0.99605 0.91709 1.08044 1.20714 0.94384 0.96808 1.01890 1.20807 0.93505 0.97379 1.02073 1.19680 0.96122 0.91633 1.04606 1.18052 0.88063 0.86248 1.01038 1.86124 1.24024 1.27819 1.83554 1.23621 0.77790 1.02833 0.98214 1.21056 0.84120 0.92430 1.00792 0.89128 1.46155 1.03765 1.49300 1.42067 1.18304 0.86587 0.78782 0.80614 1.90626 1.77737 1.42921 1.34555 1.20863 0.89861 1.32562 1.14923 0.91284 1.25712 1.00396 0.93159 0.93997 1.70024 1.35763 1.19271 1.14316 0.86345 0.82772 0.78169 0.79390 1.19798 1.20435 1.18875 1.20802 0.89520 0.99134 1.02705 0.92902 0.92969 0.88386 0.85180 0.85829 0.85678 0.92455 0.86731 0.78540 0.92017 0.89407 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.30 -4.54 10.21 -35.83 -0.37 -4.90 16 3 C 0.10 1.45 6.70 -39.03 -0.26 1.19 16 4 C -0.18 -2.21 9.03 -39.52 -0.36 -2.56 16 5 C -0.12 -1.34 10.04 -39.63 -0.40 -1.74 16 6 C -0.12 -1.48 9.66 -39.50 -0.38 -1.86 16 7 C -0.12 -1.79 5.75 -104.46 -0.60 -2.39 16 8 C 0.11 1.92 6.48 -39.10 -0.25 1.66 16 9 O -0.30 -5.87 10.00 -35.62 -0.36 -6.23 16 10 C 0.05 0.99 6.63 37.37 0.25 1.23 16 11 C 0.12 2.39 2.69 -67.68 -0.18 2.21 16 12 H 0.09 2.07 7.57 -51.93 -0.39 1.68 16 13 N -0.76 -16.27 5.09 -54.97 -0.28 -16.55 16 14 C 0.55 15.33 7.72 -12.99 -0.10 15.23 16 15 O -0.58 -18.37 14.70 5.20 0.08 -18.30 16 16 C -0.55 -15.06 9.53 -35.63 -0.34 -15.40 16 17 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 18 C 0.09 2.41 5.49 -17.36 -0.10 2.31 16 19 N -0.77 -22.75 11.85 55.55 0.66 -22.09 16 20 Si 0.91 19.87 29.56 -169.99 -5.03 14.84 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 24 C -0.08 -1.26 5.36 -27.81 -0.15 -1.41 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.13 1.17 6.28 -52.48 -0.33 0.84 16 29 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.11 2.44 8.14 -51.93 -0.42 2.01 16 33 H 0.38 7.07 8.56 -40.82 -0.35 6.72 16 34 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.07 8.10 -51.92 -0.42 0.65 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -34.92 308.30 -6.90 -41.82 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.37 Total: 7.04 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.88 Total: -0.28 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.38 Total: -38.64 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.65 Total: -29.43 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.92 -6.90 -41.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185097235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.375 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds