Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36000 * 117.00010 * 2 1 4 4 C 1.38410 * 119.93894 * 359.97438 * 3 2 1 5 5 C 1.38239 * 119.89341 * 180.02562 * 4 3 2 6 6 C 1.38102 * 120.02454 * 0.07693 * 5 4 3 7 7 C 1.38593 * 120.41918 * 0.02562 * 6 5 4 8 8 C 1.38231 * 119.86076 * 359.84706 * 7 6 5 9 9 O 1.35933 * 121.83321 * 180.31405 * 8 7 6 10 10 C 1.42820 * 117.84967 * 342.88688 * 9 8 7 11 11 C 1.53414 * 108.36545 * 49.12959 * 10 9 8 12 12 H 1.09003 * 109.69483 * 54.99359 * 11 10 9 13 13 N 1.46499 * 109.69994 * 175.59299 * 11 10 9 14 14 C 1.34780 * 119.99987 * 273.84145 * 13 11 10 15 15 O 1.21691 * 119.99770 * 0.02562 * 14 13 11 16 16 C 1.46372 * 119.99697 * 180.02562 * 14 13 11 17 17 H 1.07996 * 120.00187 * 353.93872 * 16 14 13 18 18 C 1.40054 * 119.99640 * 173.94094 * 16 14 13 19 19 N 1.30673 * 119.99999 * 6.14857 * 18 16 14 20 20 Si 1.86798 * 119.99843 * 186.15099 * 18 16 14 21 21 H 1.48504 * 109.47166 * 94.98540 * 20 18 16 22 22 H 1.48504 * 109.47129 * 214.98439 * 20 18 16 23 23 H 1.48503 * 109.47213 * 334.98289 * 20 18 16 24 24 C 1.50776 * 118.73469 * 179.80805 * 7 6 5 25 25 H 1.09004 * 109.46945 * 300.00463 * 1 2 3 26 26 H 1.09003 * 109.47259 * 59.99698 * 1 2 3 27 27 H 1.09001 * 109.47433 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.05354 * 359.97438 * 4 3 2 29 29 H 1.08006 * 119.98840 * 180.02562 * 5 4 3 30 30 H 1.07998 * 119.79113 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.68433 * 289.41041 * 10 9 8 32 32 H 1.09000 * 109.68950 * 168.84765 * 10 9 8 33 33 H 0.97000 * 119.99941 * 93.83888 * 13 11 10 34 34 H 0.97000 * 119.99847 * 180.02562 * 19 18 16 35 35 H 1.08993 * 109.43633 * 42.22179 * 24 7 6 36 36 H 1.09009 * 109.42776 * 282.36648 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2913 2.3718 -0.0005 5 6 1.9199 3.6030 -0.0011 6 6 3.2991 3.6748 -0.0027 7 6 4.0620 2.5177 -0.0043 8 6 3.4400 1.2832 -0.0011 9 8 4.1487 0.1233 0.0038 10 6 5.5270 0.1820 -0.3660 11 6 6.1923 1.3145 0.4268 12 1 6.0258 1.1633 1.4934 13 7 7.6305 1.3333 0.1485 14 6 8.4652 0.5516 0.8618 15 8 8.0242 -0.1702 1.7366 16 6 9.9022 0.5709 0.5840 17 1 10.2826 1.1354 -0.2545 18 6 10.7839 -0.1426 1.4057 19 7 10.3161 -0.9208 2.3454 20 14 12.6284 0.0183 1.1583 21 1 13.1635 1.0507 2.0820 22 1 13.2813 -1.2852 1.4409 23 1 12.9067 0.4174 -0.2448 24 6 5.5647 2.6403 -0.0104 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2128 2.3151 -0.0014 29 1 1.3322 4.5091 -0.0011 30 1 3.7862 4.6386 -0.0027 31 1 5.6124 0.3821 -1.4340 32 1 6.0113 -0.7654 -0.1295 33 1 7.9820 1.9084 -0.5491 34 1 10.9267 -1.4147 2.9147 35 1 5.8671 3.4292 0.6781 36 1 5.9042 2.8879 -1.0163 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185097235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = -114.832170 kcal Electronic energy + Delta-G solvation = -21131.833187 eV Core-core repulsion = 17773.402254 eV Total energy + Delta-G solvation = -3358.430933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.94974 -40.13388 -39.10643 -37.88868 -36.00854 -34.58387 -32.99140 -31.35265 -30.27860 -28.24188 -28.02625 -26.73435 -24.50514 -23.14415 -21.81468 -21.15826 -19.27003 -19.09157 -18.36412 -17.75928 -17.41820 -16.98384 -16.42364 -16.08943 -15.97175 -15.69716 -15.35295 -15.00203 -14.60674 -14.33452 -14.27149 -14.19546 -13.90925 -13.16533 -12.94089 -12.85642 -12.65348 -12.63353 -12.53008 -12.11054 -12.01143 -11.87996 -11.79984 -11.69362 -10.94040 -9.90269 -9.64145 -9.46140 -8.82399 -8.31188 -6.86959 0.26915 0.45322 1.41245 1.42154 1.58539 2.18652 2.28870 2.36572 2.45093 2.70971 3.00175 3.48248 3.63859 3.79956 3.89851 3.96229 4.05213 4.13525 4.28745 4.40555 4.41350 4.44399 4.52208 4.61144 4.72757 4.75139 4.93180 4.97494 5.22371 5.32098 5.39889 5.53007 5.77184 5.84994 6.06448 6.18961 6.24993 6.64669 6.85804 7.51073 8.46538 8.65439 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037821 B = 0.003781 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.154101 B = 7404.067715 C = 7922.711868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.079 3.921 4 C -0.178 4.178 5 C -0.105 4.105 6 C -0.120 4.120 7 C -0.129 4.129 8 C 0.061 3.939 9 O -0.330 6.330 10 C 0.061 3.939 11 C 0.126 3.874 12 H 0.045 0.955 13 N -0.740 5.740 14 C 0.537 3.463 15 O -0.631 6.631 16 C -0.570 4.570 17 H 0.093 0.907 18 C 0.027 3.973 19 N -0.822 5.822 20 Si 1.000 3.000 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.246 1.246 24 C -0.071 4.071 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.401 0.599 34 H 0.274 0.726 35 H 0.100 0.900 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 11.075 -8.258 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.034 3.966 4 C -0.196 4.196 5 C -0.123 4.123 6 C -0.138 4.138 7 C -0.130 4.130 8 C 0.017 3.983 9 O -0.244 6.244 10 C -0.015 4.015 11 C 0.019 3.981 12 H 0.063 0.937 13 N -0.396 5.396 14 C 0.342 3.658 15 O -0.518 6.518 16 C -0.607 4.607 17 H 0.111 0.889 18 C -0.188 4.188 19 N -0.452 5.452 20 Si 0.820 3.180 21 H -0.188 1.188 22 H -0.200 1.200 23 H -0.169 1.169 24 C -0.108 4.108 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.129 0.871 28 H 0.181 0.819 29 H 0.183 0.817 30 H 0.173 0.827 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.236 0.764 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.711 10.041 -7.445 20.868 hybrid contribution 0.911 -0.208 -0.011 0.934 sum -15.800 9.833 -7.456 20.048 Atomic orbital electron populations 1.23355 0.76397 1.05344 1.02497 1.86156 1.23488 1.26692 1.89161 1.18763 0.89051 0.86347 1.02451 1.21385 1.01118 0.90812 1.06304 1.21245 0.94211 0.97942 0.98917 1.21160 0.94197 0.97376 1.01042 1.19789 0.95976 0.92024 1.05233 1.18566 0.89114 0.86104 1.04565 1.86052 1.23600 1.30031 1.84675 1.23309 0.78337 1.00716 0.99161 1.21021 0.82979 0.95664 0.98399 0.93710 1.45714 1.04398 1.48107 1.41380 1.18696 0.87773 0.78831 0.80484 1.90584 1.78823 1.45298 1.37048 1.21427 0.90183 1.33124 1.15957 0.88941 1.27018 1.06773 0.91959 0.93027 1.70205 1.38399 1.20696 1.15853 0.84969 0.74449 0.78352 0.80272 1.18802 1.20008 1.16881 1.20713 0.89715 0.96129 1.04254 0.91456 0.91002 0.87072 0.81928 0.81727 0.82731 0.90254 0.90582 0.76396 0.91575 0.88181 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -10.22 10.21 -78.17 -0.80 -11.01 16 3 C 0.08 2.37 6.70 22.62 0.15 2.52 16 4 C -0.18 -3.70 9.03 22.31 0.20 -3.50 16 5 C -0.11 -1.89 10.04 22.24 0.22 -1.67 16 6 C -0.12 -2.55 9.66 22.32 0.22 -2.33 16 7 C -0.13 -3.75 5.75 -19.76 -0.11 -3.86 16 8 C 0.06 2.14 6.48 22.58 0.15 2.29 16 9 O -0.33 -13.73 10.00 -77.41 -0.77 -14.50 16 10 C 0.06 2.50 6.63 72.12 0.48 2.98 16 11 C 0.13 5.14 2.69 45.15 0.12 5.27 16 12 H 0.04 2.23 7.57 -2.39 -0.02 2.21 16 13 N -0.74 -32.75 5.09 -446.05 -2.27 -35.02 16 14 C 0.54 31.13 7.72 86.36 0.67 31.80 16 15 O -0.63 -42.96 14.70 -4.32 -0.06 -43.02 16 16 C -0.57 -31.96 9.53 24.83 0.24 -31.73 16 17 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 18 C 0.03 1.52 5.49 85.31 0.47 1.99 16 19 N -0.82 -50.79 11.85 21.84 0.26 -50.53 16 20 Si 1.00 40.71 29.56 68.60 2.03 42.74 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 23 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 24 C -0.07 -2.07 5.36 29.89 0.16 -1.91 16 25 H 0.07 0.92 7.66 -2.38 -0.02 0.90 16 26 H 0.07 0.91 7.65 -2.39 -0.02 0.89 16 27 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.16 2.22 6.28 -2.91 -0.02 2.20 16 29 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 33 H 0.40 14.63 8.56 -92.71 -0.79 13.84 16 34 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 35 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.11 2.57 8.10 -2.38 -0.02 2.55 16 Total: -1.00 -82.87 308.30 2.77 -80.10 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.32 Total: 27.98 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 4.07 Total: 3.28 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.01 Total: -85.54 kcal Atomic # 8 Polarization: -66.91 SS G_CDS: -1.64 Total: -68.54 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -82.87 2.77 -80.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185097235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.735 kcal (2) G-P(sol) polarization free energy of solvation -82.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds