Wall clock time and date at job start Mon Mar 30 2020 02:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35657 * 117.00054 * 2 1 4 4 C 1.38699 * 120.14994 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08683 * 179.97438 * 4 3 2 6 6 C 1.38552 * 120.38842 * 359.97025 * 5 4 3 7 7 C 1.37782 * 120.30026 * 0.02562 * 6 5 4 8 8 C 1.39711 * 119.91049 * 0.02572 * 7 6 5 9 9 C 1.47538 * 120.19426 * 180.02562 * 8 7 6 10 10 O 1.21583 * 120.00105 * 145.84862 * 9 8 7 11 11 N 1.34773 * 119.99490 * 325.84157 * 9 8 7 12 12 C 1.47072 * 136.06192 * 4.40404 * 11 9 8 13 13 C 1.53238 * 88.08049 * 207.20262 * 12 11 9 14 14 O 1.42893 * 114.19879 * 87.72979 * 13 12 11 15 15 C 1.50706 * 114.32082 * 220.46941 * 13 12 11 16 16 H 1.07998 * 120.00024 * 99.38498 * 15 13 12 17 17 C 1.37881 * 120.00028 * 279.38452 * 15 13 12 18 18 N 1.31510 * 120.00019 * 5.33761 * 17 15 13 19 19 Si 1.86801 * 119.99981 * 185.33930 * 17 15 13 20 20 H 1.48497 * 109.47069 * 94.99986 * 19 17 15 21 21 H 1.48502 * 109.46930 * 214.99776 * 19 17 15 22 22 H 1.48494 * 109.46906 * 334.99578 * 19 17 15 23 23 C 1.47074 * 136.05390 * 184.77006 * 11 9 8 24 24 H 1.09002 * 109.46834 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47151 * 299.99850 * 1 2 3 26 26 H 1.09004 * 109.46862 * 60.00001 * 1 2 3 27 27 H 1.08003 * 119.95808 * 359.96722 * 4 3 2 28 28 H 1.08000 * 119.80898 * 179.69302 * 5 4 3 29 29 H 1.07999 * 119.85106 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.04929 * 179.97438 * 7 6 5 31 31 H 1.08997 * 113.46317 * 321.93018 * 12 11 9 32 32 H 1.08999 * 113.46826 * 92.37205 * 12 11 9 33 33 H 0.96703 * 114.00327 * 81.20019 * 14 13 12 34 34 H 0.96994 * 120.00230 * 180.02562 * 18 17 15 35 35 H 1.09000 * 113.46406 * 267.62382 * 23 11 9 36 36 H 1.08998 * 113.46547 * 38.00986 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3739 0.0005 5 6 1.9206 3.6033 0.0011 6 6 3.3038 3.6836 0.0017 7 6 4.0668 2.5364 0.0013 8 6 3.4442 1.2857 -0.0004 9 6 4.2551 0.0531 -0.0003 10 8 3.8606 -0.9341 0.5897 11 7 5.4331 0.0216 -0.6543 12 6 6.2631 0.9886 -1.3884 13 6 6.8184 -0.1844 -2.2030 14 8 6.0475 -0.5103 -3.3612 15 6 8.2985 -0.1052 -2.4755 16 1 8.9903 -0.6710 -1.8691 17 6 8.7695 0.6894 -3.4991 18 7 7.9398 1.4586 -4.1695 19 14 10.5862 0.6735 -3.9337 20 1 10.8210 -0.2837 -5.0445 21 1 11.0062 2.0340 -4.3555 22 1 11.3754 0.2576 -2.7466 23 6 6.4512 -0.9967 -0.9534 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2139 2.3194 0.0004 28 1 1.3304 4.5077 -0.0035 29 1 3.7862 4.6499 0.0017 30 1 5.1447 2.6037 0.0013 31 1 5.6835 1.6934 -1.9846 32 1 7.0121 1.4783 -0.7661 33 1 6.2267 0.0553 -4.1249 34 1 8.2710 2.0174 -4.8898 35 1 7.2509 -1.0412 -0.2141 36 1 6.0314 -1.9769 -1.1797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186813822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:43 Heat of formation + Delta-G solvation = -70.866827 kcal Electronic energy + Delta-G solvation = -21581.198170 eV Core-core repulsion = 18224.673717 eV Total energy + Delta-G solvation = -3356.524452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72904 -40.74731 -38.91408 -38.25340 -35.87286 -34.20649 -32.66979 -31.13557 -30.22319 -28.21990 -27.22451 -26.86846 -24.53214 -23.01575 -21.95327 -20.40765 -19.36303 -18.84762 -18.04122 -17.55272 -17.11264 -16.86192 -16.59054 -16.18661 -16.00923 -15.75270 -15.30633 -14.94911 -14.63828 -14.30105 -14.07256 -13.83766 -13.51093 -13.44502 -13.10342 -12.80048 -12.73784 -12.57760 -12.25711 -12.18470 -12.10502 -12.05223 -11.30342 -10.94900 -10.67552 -10.23871 -10.08047 -9.60753 -9.23583 -8.25410 -6.41706 -0.07326 0.38782 1.47649 1.51657 1.60528 1.77547 1.95699 2.31780 2.42563 2.78033 2.96149 3.44799 3.69633 3.84010 3.95402 4.10957 4.21156 4.34447 4.35772 4.35903 4.45740 4.53289 4.59199 4.66925 4.73155 4.79264 4.91117 4.99396 5.16561 5.24277 5.31523 5.44713 5.72544 5.75931 5.93889 6.39968 6.63818 6.83227 7.14402 7.30579 7.35053 8.81573 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.004874 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.489912 B = 5743.782885 C = 6250.252180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.155 3.845 4 C -0.215 4.215 5 C -0.046 4.046 6 C -0.162 4.162 7 C -0.056 4.056 8 C -0.194 4.194 9 C 0.575 3.425 10 O -0.588 6.588 11 N -0.637 5.637 12 C 0.096 3.904 13 C 0.221 3.779 14 O -0.581 6.581 15 C -0.555 4.555 16 H 0.073 0.927 17 C 0.037 3.963 18 N -0.912 5.912 19 Si 0.967 3.033 20 H -0.280 1.280 21 H -0.279 1.279 22 H -0.267 1.267 23 C 0.109 3.891 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.160 0.840 30 H 0.130 0.870 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.385 0.615 34 H 0.275 0.725 35 H 0.105 0.895 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.164 8.296 5.800 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.108 3.892 4 C -0.233 4.233 5 C -0.064 4.064 6 C -0.180 4.180 7 C -0.075 4.075 8 C -0.198 4.198 9 C 0.367 3.633 10 O -0.470 6.470 11 N -0.370 5.370 12 C -0.027 4.027 13 C 0.180 3.820 14 O -0.391 6.391 15 C -0.593 4.593 16 H 0.091 0.909 17 C -0.164 4.164 18 N -0.551 5.551 19 Si 0.792 3.208 20 H -0.206 1.206 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.014 4.014 24 H 0.127 0.873 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.183 0.817 28 H 0.191 0.809 29 H 0.178 0.822 30 H 0.148 0.852 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.236 0.764 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.752 7.253 6.473 15.252 hybrid contribution 1.017 0.107 -0.727 1.255 sum -10.735 7.360 5.746 14.228 Atomic orbital electron populations 1.23434 0.76116 1.05463 1.02890 1.86234 1.23836 1.27042 1.87397 1.19296 0.90562 0.85971 0.93372 1.21557 1.01508 0.91025 1.09217 1.21615 0.94492 0.98010 0.92310 1.21391 0.94522 0.98468 1.03654 1.21417 1.00719 0.90721 0.94656 1.19332 0.91624 0.93738 1.15080 1.18168 0.79750 0.88183 0.77179 1.90675 1.72006 1.38075 1.46263 1.49720 1.18172 1.16433 1.52628 1.23890 0.90802 0.95270 0.92740 1.19760 0.89569 0.90193 0.82500 1.86076 1.66779 1.61885 1.24360 1.21573 0.91134 1.28775 1.17834 0.90912 1.25714 1.02557 0.93184 0.94983 1.69693 1.36941 1.25809 1.22609 0.85404 0.79421 0.77429 0.78533 1.20588 1.20478 1.19110 1.23314 0.88718 0.93101 0.96230 0.87311 0.90544 0.90864 0.81683 0.80922 0.82226 0.85220 0.91988 0.88788 0.76360 0.91579 0.87750 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -11.78 9.10 -72.42 -0.66 -12.44 16 3 C 0.16 5.26 6.67 22.84 0.15 5.41 16 4 C -0.21 -4.95 9.03 22.34 0.20 -4.75 16 5 C -0.05 -0.89 10.03 22.30 0.22 -0.67 16 6 C -0.16 -3.73 10.02 22.24 0.22 -3.51 16 7 C -0.06 -1.79 8.70 22.52 0.20 -1.59 16 8 C -0.19 -7.53 5.79 -20.01 -0.12 -7.65 16 9 C 0.57 27.13 7.61 86.70 0.66 27.79 16 10 O -0.59 -31.23 16.68 13.33 0.22 -31.01 16 11 N -0.64 -29.49 3.68 -863.00 -3.17 -32.66 16 12 C 0.10 4.25 5.75 83.10 0.48 4.73 16 13 C 0.22 10.92 1.42 -11.29 -0.02 10.90 16 14 O -0.58 -31.01 13.52 -148.98 -2.01 -33.02 16 15 C -0.56 -27.90 8.66 25.60 0.22 -27.68 16 16 H 0.07 3.56 7.82 -2.91 -0.02 3.54 16 17 C 0.04 1.82 5.35 84.66 0.45 2.28 16 18 N -0.91 -45.65 11.56 21.45 0.25 -45.40 16 19 Si 0.97 39.20 29.54 68.60 2.03 41.23 16 20 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 23 C 0.11 5.07 8.04 83.18 0.67 5.74 16 24 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.08 1.22 7.66 -2.39 -0.02 1.20 16 26 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 27 H 0.17 2.56 6.30 -2.91 -0.02 2.54 16 28 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 29 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.13 4.12 6.32 -2.91 -0.02 4.10 16 31 H 0.06 2.80 7.64 -2.39 -0.02 2.78 16 32 H 0.09 3.89 8.09 -2.39 -0.02 3.87 16 33 H 0.38 20.35 7.03 -74.06 -0.52 19.83 16 34 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 35 H 0.10 4.38 8.10 -2.39 -0.02 4.36 16 36 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -69.05 309.60 1.70 -67.35 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.59 Total: 33.54 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 4.46 Total: 12.41 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.93 Total: -78.06 kcal Atomic # 8 Polarization: -74.02 SS G_CDS: -2.45 Total: -76.47 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -69.05 1.70 -67.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186813822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.516 kcal (2) G-P(sol) polarization free energy of solvation -69.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds