Wall clock time and date at job start Mon Mar 30 2020 01:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21290 * 119.99507 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00516 * 180.02562 * 13 12 2 16 16 C 1.50704 * 109.46930 * 180.02562 * 15 13 12 17 17 C 1.38250 * 119.92819 * 269.72477 * 16 15 13 18 18 C 1.38232 * 120.14179 * 179.69489 * 17 16 15 19 19 C 1.38540 * 120.03037 * 0.63617 * 18 17 16 20 20 C 1.39269 * 119.82805 * 359.64344 * 19 18 17 21 21 C 1.38240 * 119.92756 * 90.00300 * 16 15 13 22 22 O 1.36497 * 108.64138 * 179.97438 * 20 19 18 23 23 C 1.43992 * 105.48776 * 342.72087 * 22 20 19 24 24 O 1.36506 * 131.53543 * 179.63786 * 19 18 17 25 25 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 27 27 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 30 30 H 1.09003 * 109.46738 * 300.00359 * 15 13 12 31 31 H 1.08994 * 109.46445 * 60.00413 * 15 13 12 32 32 H 1.07999 * 119.92722 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.98717 * 180.27453 * 18 17 16 34 34 H 1.08005 * 119.98360 * 359.97438 * 21 16 15 35 35 H 1.09004 * 110.57225 * 268.56017 * 23 22 20 36 36 H 1.08993 * 110.57604 * 145.68047 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8589 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5879 16 6 2.7001 0.2401 -4.7412 17 6 1.6000 0.3907 -5.5649 18 6 1.6401 1.2826 -6.6203 19 6 2.7885 2.0185 -6.8630 20 6 3.8987 1.8625 -6.0367 21 6 3.8491 0.9718 -4.9767 22 8 4.8914 2.6882 -6.4794 23 6 4.5217 3.0476 -7.8238 24 8 3.0855 2.9423 -7.8230 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7006 1.1552 3.4844 29 1 2.2490 -1.6317 -1.1528 30 1 3.6480 -1.1211 -3.3987 31 1 1.9759 -1.5503 -3.8327 32 1 0.7059 -0.1863 -5.3806 33 1 0.7777 1.4015 -7.2595 34 1 4.7084 0.8491 -4.3340 35 1 4.9567 2.3506 -8.5400 36 1 4.8305 4.0690 -8.0459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194632786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:48 Heat of formation + Delta-G solvation = -77.529150 kcal Electronic energy + Delta-G solvation = -20729.836335 eV Core-core repulsion = 17373.022982 eV Total energy + Delta-G solvation = -3356.813352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.17507 -39.23753 -37.66581 -36.32071 -34.76506 -32.47936 -32.01643 -30.43048 -29.12223 -27.18664 -25.58649 -25.23848 -22.97176 -22.45603 -20.93038 -19.39845 -17.96244 -17.66062 -17.40903 -17.02512 -16.26788 -15.65400 -15.22505 -14.81780 -14.49490 -14.23737 -13.94569 -13.86156 -13.39808 -13.14341 -13.02260 -12.67848 -12.41446 -12.11166 -11.87918 -11.57437 -11.12724 -11.04720 -10.93784 -10.83040 -10.69495 -10.29679 -10.23812 -9.08877 -9.03429 -8.77623 -8.54822 -8.00523 -7.89639 -6.12131 -4.21557 1.13996 1.26012 2.70357 3.23563 3.31302 3.33761 3.36279 3.41462 3.52264 4.20663 4.42717 4.49124 4.51390 4.69132 4.83880 5.00373 5.13208 5.20138 5.23126 5.43286 5.59045 5.61757 5.65243 6.02692 6.08886 6.22477 6.37754 6.54759 6.83335 6.97344 7.10647 7.16251 7.47486 7.57053 7.70098 7.92463 8.15923 8.67645 8.78949 9.14770 9.46345 10.93813 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037606 B = 0.003343 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.387300 B = 8374.551415 C = 8563.721661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.710 5.710 13 C 0.501 3.499 14 O -0.546 6.546 15 C -0.104 4.104 16 C -0.042 4.042 17 C -0.096 4.096 18 C -0.098 4.098 19 C 0.022 3.978 20 C 0.031 3.969 21 C -0.085 4.085 22 O -0.310 6.310 23 C 0.214 3.786 24 O -0.312 6.312 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.014 0.986 28 H 0.264 0.736 29 H 0.389 0.611 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 -2.769 -18.906 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.358 5.358 13 C 0.285 3.715 14 O -0.425 6.425 15 C -0.144 4.144 16 C -0.043 4.043 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.022 4.022 20 C -0.013 4.013 21 C -0.104 4.104 22 O -0.226 6.226 23 C 0.102 3.898 24 O -0.229 6.229 25 H 0.045 0.955 26 H 0.108 0.892 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.098 0.902 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.516 -1.573 -18.812 19.411 hybrid contribution 0.539 -0.692 0.774 1.170 sum 5.055 -2.265 -18.038 18.869 Atomic orbital electron populations 1.22075 0.98506 0.99055 1.00916 1.18738 0.91005 0.94009 0.80042 0.93415 1.21265 1.32296 1.13265 0.90346 0.92008 1.24898 0.94822 0.94971 0.99092 1.69913 1.35872 1.22527 1.23761 0.86397 0.78579 0.79535 0.82595 1.19731 1.20884 1.20895 1.46523 1.65273 1.13540 1.10499 1.20264 0.79107 0.87641 0.84508 1.90699 1.50775 1.15963 1.85035 1.20726 1.04123 0.97662 0.91925 1.19065 0.92637 0.97268 0.95338 1.20773 0.98218 0.98545 0.93835 1.19979 0.95887 0.95910 0.99848 1.19757 0.96577 0.93839 0.92000 1.19670 0.87679 0.95276 0.98675 1.19884 0.99664 0.94595 0.96238 1.87359 1.44089 1.61817 1.29366 1.25568 0.77700 1.02990 0.83577 1.87336 1.23455 1.56769 1.55306 0.95497 0.89182 0.96656 0.92632 0.77911 0.88147 0.87990 0.84521 0.84847 0.84830 0.90169 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.67 2.56 -69.08 -0.18 6.49 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.94 11.31 55.43 0.63 -24.31 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 N -0.71 -14.28 5.07 -54.93 -0.28 -14.55 16 13 C 0.50 9.56 7.79 -10.99 -0.09 9.48 16 14 O -0.55 -13.00 15.70 5.55 0.09 -12.91 16 15 C -0.10 -1.36 5.83 -29.03 -0.17 -1.53 16 16 C -0.04 -0.59 4.37 -104.61 -0.46 -1.05 16 17 C -0.10 -1.23 9.69 -39.58 -0.38 -1.61 16 18 C -0.10 -1.24 10.06 -39.47 -0.40 -1.64 16 19 C 0.02 0.31 7.15 -39.09 -0.28 0.03 16 20 C 0.03 0.46 7.15 -39.09 -0.28 0.18 16 21 C -0.09 -1.23 9.71 -39.47 -0.38 -1.62 16 22 O -0.31 -4.23 11.40 -45.68 -0.52 -4.75 16 23 C 0.21 2.09 8.89 101.05 0.90 2.99 16 24 O -0.31 -4.05 11.40 -45.71 -0.52 -4.57 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 6.57 8.54 -40.82 -0.35 6.22 16 30 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 31 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -33.24 313.36 -7.07 -40.31 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.40 Total: 4.80 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.76 Total: -4.25 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.35 Total: -38.87 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.96 Total: -22.23 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.24 -7.07 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194632786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.222 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds