Wall clock time and date at job start Mon Mar 30 2020 01:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21290 * 119.99507 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00516 * 180.02562 * 13 12 2 16 16 C 1.50704 * 109.46930 * 180.02562 * 15 13 12 17 17 C 1.38250 * 119.92819 * 269.72477 * 16 15 13 18 18 C 1.38232 * 120.14179 * 179.69489 * 17 16 15 19 19 C 1.38540 * 120.03037 * 0.63617 * 18 17 16 20 20 C 1.39269 * 119.82805 * 359.64344 * 19 18 17 21 21 C 1.38240 * 119.92756 * 90.00300 * 16 15 13 22 22 O 1.36497 * 108.64138 * 179.97438 * 20 19 18 23 23 C 1.43992 * 105.48776 * 342.72087 * 22 20 19 24 24 O 1.36506 * 131.53543 * 179.63786 * 19 18 17 25 25 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 27 27 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 30 30 H 1.09003 * 109.46738 * 300.00359 * 15 13 12 31 31 H 1.08994 * 109.46445 * 60.00413 * 15 13 12 32 32 H 1.07999 * 119.92722 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.98717 * 180.27453 * 18 17 16 34 34 H 1.08005 * 119.98360 * 359.97438 * 21 16 15 35 35 H 1.09004 * 110.57225 * 268.56017 * 23 22 20 36 36 H 1.08993 * 110.57604 * 145.68047 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8589 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5879 16 6 2.7001 0.2401 -4.7412 17 6 1.6000 0.3907 -5.5649 18 6 1.6401 1.2826 -6.6203 19 6 2.7885 2.0185 -6.8630 20 6 3.8987 1.8625 -6.0367 21 6 3.8491 0.9718 -4.9767 22 8 4.8914 2.6882 -6.4794 23 6 4.5217 3.0476 -7.8238 24 8 3.0855 2.9423 -7.8230 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7006 1.1552 3.4844 29 1 2.2490 -1.6317 -1.1528 30 1 3.6480 -1.1211 -3.3987 31 1 1.9759 -1.5503 -3.8327 32 1 0.7059 -0.1863 -5.3806 33 1 0.7777 1.4015 -7.2595 34 1 4.7084 0.8491 -4.3340 35 1 4.9567 2.3506 -8.5400 36 1 4.8305 4.0690 -8.0459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194632786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:48 Heat of formation + Delta-G solvation = -100.566297 kcal Electronic energy + Delta-G solvation = -20730.835300 eV Core-core repulsion = 17373.022982 eV Total energy + Delta-G solvation = -3357.812318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.11714 -40.68686 -38.83711 -37.28251 -36.62764 -34.29554 -33.24388 -31.44768 -30.85503 -28.32510 -27.31093 -26.48561 -23.97319 -23.75992 -22.50986 -21.07432 -19.02133 -18.90017 -18.39639 -18.34908 -17.45891 -17.24130 -16.93193 -16.13898 -15.81127 -15.46091 -15.25246 -14.85065 -14.72775 -14.50374 -14.28891 -13.99284 -13.80897 -13.58314 -13.15974 -13.03551 -12.88192 -12.70254 -12.61371 -12.24723 -12.09645 -12.03718 -11.75591 -11.06183 -10.71040 -10.55086 -9.82267 -9.68175 -9.01278 -8.15708 -6.33195 0.10553 0.24418 1.45532 1.46678 1.58626 1.79788 1.91984 2.33657 2.46438 2.54466 2.91698 3.15022 3.50066 3.70914 3.81090 4.05114 4.06635 4.23637 4.26126 4.31966 4.48888 4.67160 4.69516 4.79635 4.95772 5.03614 5.08191 5.13838 5.23722 5.41630 5.48196 5.54148 5.65627 5.74078 5.95345 6.13290 6.13981 6.76422 7.05051 7.35514 7.66000 8.90646 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037606 B = 0.003343 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.387300 B = 8374.551415 C = 8563.721661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.006 1.006 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.257 1.257 10 H -0.286 1.286 11 H -0.279 1.279 12 N -0.706 5.706 13 C 0.497 3.503 14 O -0.599 6.599 15 C -0.087 4.087 16 C -0.058 4.058 17 C -0.097 4.097 18 C -0.102 4.102 19 C 0.010 3.990 20 C 0.011 3.989 21 C -0.102 4.102 22 O -0.330 6.330 23 C 0.204 3.796 24 O -0.325 6.325 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.012 0.988 28 H 0.264 0.736 29 H 0.408 0.592 30 H 0.129 0.871 31 H 0.142 0.858 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.136 0.864 35 H 0.108 0.892 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 -4.842 -19.816 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.012 0.988 4 C -0.582 4.582 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.181 1.181 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.355 5.355 13 C 0.285 3.715 14 O -0.481 6.481 15 C -0.127 4.127 16 C -0.058 4.058 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.034 4.034 20 C -0.033 4.033 21 C -0.121 4.121 22 O -0.247 6.247 23 C 0.094 3.906 24 O -0.242 6.242 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.243 0.757 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.175 0.825 34 H 0.154 0.846 35 H 0.126 0.874 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.037 -3.691 -19.758 20.721 hybrid contribution 0.404 0.039 0.963 1.046 sum 5.441 -3.652 -18.795 19.904 Atomic orbital electron populations 1.21889 0.98359 0.99524 0.99446 1.18302 0.91098 0.91795 0.82239 0.98835 1.21619 1.32275 1.13564 0.90786 0.90588 1.25826 0.94929 0.95621 1.02450 1.70070 1.37152 1.24137 1.24453 0.85291 0.78055 0.78545 0.78394 1.18102 1.21214 1.20522 1.46254 1.65361 1.14344 1.09569 1.21295 0.77557 0.87118 0.85559 1.90680 1.52847 1.18605 1.85939 1.20705 1.06322 0.97586 0.88056 1.19256 0.92871 0.97759 0.95942 1.21127 0.98595 0.98426 0.93347 1.20338 0.96254 0.95386 1.00088 1.20049 0.96911 0.94197 0.92245 1.19901 0.88389 0.95831 0.99213 1.20101 1.00327 0.95110 0.96515 1.87315 1.44310 1.61768 1.31262 1.26119 0.76358 1.05628 0.82514 1.87301 1.25270 1.56557 1.55036 0.93829 0.91833 0.96909 0.92665 0.75688 0.85272 0.84034 0.82211 0.82550 0.84618 0.87408 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.26 71.98 0.67 -6.04 16 2 C 0.27 13.82 2.56 44.24 0.11 13.94 16 3 H -0.01 -0.39 7.58 -2.38 -0.02 -0.41 16 4 C -0.54 -28.43 8.73 25.60 0.22 -28.21 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -53.02 11.31 21.45 0.24 -52.77 16 8 Si 0.97 41.72 29.54 68.60 2.03 43.75 16 9 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.71 -27.68 5.07 -446.09 -2.26 -29.94 16 13 C 0.50 18.55 7.79 87.66 0.68 19.23 16 14 O -0.60 -29.01 15.70 -3.06 -0.05 -29.06 16 15 C -0.09 -2.04 5.83 29.10 0.17 -1.87 16 16 C -0.06 -1.52 4.37 -19.86 -0.09 -1.61 16 17 C -0.10 -2.31 9.69 22.27 0.22 -2.10 16 18 C -0.10 -2.46 10.06 22.34 0.22 -2.24 16 19 C 0.01 0.28 7.15 22.59 0.16 0.44 16 20 C 0.01 0.31 7.15 22.59 0.16 0.48 16 21 C -0.10 -2.91 9.71 22.34 0.22 -2.70 16 22 O -0.33 -8.91 11.40 -76.01 -0.87 -9.78 16 23 C 0.20 3.74 8.89 113.37 1.01 4.74 16 24 O -0.32 -8.12 11.40 -76.13 -0.87 -8.99 16 25 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 3.54 6.06 -2.38 -0.01 3.52 16 27 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.41 12.81 8.54 -92.70 -0.79 12.02 16 30 H 0.13 2.32 8.08 -2.39 -0.02 2.30 16 31 H 0.14 2.23 8.08 -2.39 -0.02 2.21 16 32 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.74 313.36 2.75 -72.00 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.32 Total: 19.67 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 4.21 Total: -4.87 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.02 Total: -82.71 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -1.78 Total: -47.83 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -74.74 2.75 -72.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194632786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.571 kcal (2) G-P(sol) polarization free energy of solvation -74.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds