Wall clock time and date at job start Mon Mar 30 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47417 * 2 1 4 4 C 1.50706 * 109.46848 * 239.99554 * 2 1 3 5 5 H 1.07999 * 120.00159 * 275.00384 * 4 2 1 6 6 C 1.37878 * 119.99547 * 95.00600 * 4 2 1 7 7 N 1.31520 * 119.99618 * 184.91232 * 6 4 2 8 8 Si 1.86801 * 120.00191 * 4.91310 * 6 4 2 9 9 H 1.48505 * 109.46981 * 84.83789 * 8 6 4 10 10 H 1.48506 * 109.47043 * 204.83327 * 8 6 4 11 11 H 1.48497 * 109.47171 * 324.83445 * 8 6 4 12 12 N 1.46496 * 109.47025 * 120.00142 * 2 1 3 13 13 C 1.34780 * 119.99747 * 274.71757 * 12 2 1 14 14 O 1.21280 * 120.00351 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99844 * 179.97438 * 13 12 2 16 16 C 1.50700 * 109.46996 * 180.02562 * 15 13 12 17 17 C 1.38250 * 119.93264 * 269.73539 * 16 15 13 18 18 C 1.38237 * 120.14143 * 179.69399 * 17 16 15 19 19 C 1.38544 * 120.03221 * 0.62679 * 18 17 16 20 20 C 1.39271 * 119.82558 * 359.64621 * 19 18 17 21 21 C 1.38241 * 119.92402 * 90.00146 * 16 15 13 22 22 O 1.36502 * 108.63702 * 179.97438 * 20 19 18 23 23 C 1.43985 * 105.48640 * 342.71642 * 22 20 19 24 24 O 1.36498 * 131.53239 * 179.64518 * 19 18 17 25 25 H 1.09003 * 109.46824 * 295.04071 * 1 2 3 26 26 H 1.09001 * 109.46717 * 55.03676 * 1 2 3 27 27 H 1.08995 * 109.47557 * 175.04004 * 1 2 3 28 28 H 0.97001 * 119.99582 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00433 * 94.99835 * 12 2 1 30 30 H 1.08997 * 109.47244 * 300.00408 * 15 13 12 31 31 H 1.09000 * 109.46610 * 60.00954 * 15 13 12 32 32 H 1.08004 * 119.92633 * 359.96556 * 17 16 15 33 33 H 1.07997 * 119.98192 * 180.27130 * 18 17 16 34 34 H 1.08000 * 119.98624 * 0.02562 * 21 16 15 35 35 H 1.08997 * 110.58083 * 268.56206 * 23 22 20 36 36 H 1.09000 * 110.57019 * 145.67994 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1354 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6134 -3.4622 8 14 2.3136 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7823 10 1 2.1059 2.3990 -3.6929 11 1 1.1988 2.3274 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 2.1524 -0.0169 2.3557 14 8 1.8684 1.1610 2.4091 15 6 2.6542 -0.7274 3.5864 16 6 2.7109 0.2425 4.7384 17 6 3.8647 0.9668 4.9741 18 6 3.9193 1.8623 6.0258 19 6 2.8213 2.0265 6.8545 20 6 1.6609 1.2927 6.6204 21 6 1.6110 0.4019 5.5604 22 8 0.7339 1.6298 7.5639 23 6 1.4746 2.2716 8.6187 24 8 2.6210 2.8237 7.9442 25 1 -0.3633 0.4350 0.9311 26 1 -0.3633 0.5889 -0.8422 27 1 -0.3634 -1.0237 -0.0888 28 1 2.9363 -0.1051 -4.2556 29 1 2.2490 -1.6318 1.1526 30 1 1.9786 -1.5461 3.8341 31 1 3.6513 -1.1242 3.3956 32 1 4.7236 0.8358 4.3326 33 1 4.8205 2.4300 6.2050 34 1 0.7126 -0.1687 5.3768 35 1 1.7846 1.5428 9.3675 36 1 0.8815 3.0636 9.0760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194632801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:50 Heat of formation + Delta-G solvation = -77.960789 kcal Electronic energy + Delta-G solvation = -20833.693113 eV Core-core repulsion = 17476.861043 eV Total energy + Delta-G solvation = -3356.832070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.22375 -39.35476 -37.75701 -36.36958 -34.86426 -32.48858 -32.11054 -30.49748 -29.80778 -27.35099 -25.65518 -25.29152 -23.02081 -22.49437 -20.82492 -19.56600 -18.00859 -17.74038 -17.46034 -17.29253 -16.30940 -15.94398 -15.37657 -14.97676 -14.54411 -14.12276 -13.91268 -13.89354 -13.58096 -13.15275 -13.07088 -12.74808 -12.53717 -12.43467 -12.11494 -11.92245 -11.32405 -11.17956 -11.06243 -10.88029 -10.80720 -10.57077 -9.88405 -9.22599 -9.18923 -8.84524 -8.70507 -8.08476 -8.05464 -6.24544 -4.28215 1.08931 1.20985 2.65575 3.24430 3.29354 3.32368 3.34113 3.41949 3.46653 4.14549 4.32143 4.43954 4.47113 4.64003 4.78809 4.95277 5.08545 5.13349 5.18811 5.38204 5.52737 5.55862 5.59340 5.97826 6.03586 6.17554 6.32307 6.35641 6.49344 6.52958 6.68508 6.94417 7.05866 7.19145 7.37793 7.55877 8.13149 8.56961 8.76127 8.99214 9.37870 10.87170 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033047 B = 0.003723 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.079437 B = 7518.519974 C = 7622.179763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.231 3.769 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.705 5.705 13 C 0.501 3.499 14 O -0.551 6.551 15 C -0.104 4.104 16 C -0.044 4.044 17 C -0.095 4.095 18 C -0.097 4.097 19 C 0.023 3.977 20 C 0.030 3.970 21 C -0.085 4.085 22 O -0.310 6.310 23 C 0.214 3.786 24 O -0.312 6.312 25 H 0.028 0.972 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.394 0.606 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 0.533 21.556 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.128 3.872 3 H 0.068 0.932 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.354 5.354 13 C 0.285 3.715 14 O -0.430 6.430 15 C -0.144 4.144 16 C -0.044 4.044 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.021 4.021 20 C -0.014 4.014 21 C -0.104 4.104 22 O -0.227 6.227 23 C 0.102 3.898 24 O -0.228 6.228 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.227 0.773 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.099 0.901 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.574 1.566 21.453 21.518 hybrid contribution -0.003 0.598 0.039 0.600 sum 0.572 2.165 21.492 21.609 Atomic orbital electron populations 1.22215 0.98653 1.00525 0.99231 1.19117 0.90882 0.94358 0.82813 0.93238 1.21022 1.45220 0.95624 0.94984 0.90314 1.24945 0.93609 0.98635 0.95161 1.69886 1.44786 1.36203 1.01693 0.86894 0.79829 0.85832 0.77343 1.19839 1.21192 1.18503 1.46633 1.65014 1.13832 1.09872 1.20381 0.78854 0.87658 0.84597 1.90684 1.51160 1.15986 1.85121 1.20721 1.04367 0.97658 0.91659 1.19066 0.92919 0.97741 0.94709 1.20804 0.98519 0.95581 0.96403 1.19995 0.96087 1.00280 0.95227 1.19763 0.96010 0.93904 0.92454 1.19671 0.87293 0.99279 0.95130 1.19864 0.99481 0.97657 0.93410 1.87354 1.30872 1.74800 1.29645 1.25572 0.80644 0.94843 0.88776 1.87341 1.48281 1.49985 1.37241 0.95247 0.92983 0.93426 0.92235 0.77318 0.88054 0.87703 0.84417 0.84811 0.84887 0.90127 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.47 37.16 0.35 -2.87 16 2 C 0.23 5.42 2.23 -69.08 -0.15 5.27 16 3 H 0.05 1.28 4.72 -51.93 -0.25 1.04 16 4 C -0.53 -14.07 9.05 -34.44 -0.31 -14.38 16 5 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 8 Si 0.87 21.58 26.99 -169.99 -4.59 17.00 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.26 -6.39 6.82 56.52 0.39 -6.00 16 12 N -0.70 -13.55 5.07 -54.93 -0.28 -13.83 16 13 C 0.50 9.11 7.79 -10.98 -0.09 9.02 16 14 O -0.55 -12.41 15.69 5.56 0.09 -12.32 16 15 C -0.10 -1.30 5.83 -29.03 -0.17 -1.47 16 16 C -0.04 -0.59 4.37 -104.62 -0.46 -1.04 16 17 C -0.09 -1.20 9.69 -39.58 -0.38 -1.58 16 18 C -0.10 -1.22 10.06 -39.47 -0.40 -1.61 16 19 C 0.02 0.31 7.15 -39.08 -0.28 0.03 16 20 C 0.03 0.43 7.15 -39.08 -0.28 0.15 16 21 C -0.09 -1.18 9.71 -39.47 -0.38 -1.56 16 22 O -0.31 -4.06 11.40 -45.70 -0.52 -4.58 16 23 C 0.21 2.01 8.89 101.05 0.90 2.90 16 24 O -0.31 -3.94 11.40 -45.68 -0.52 -4.46 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.39 6.48 8.59 -40.82 -0.35 6.12 16 30 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -33.74 313.13 -6.47 -40.20 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.39 Total: 3.50 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.75 Total: -5.00 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.50 Total: -39.06 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.95 Total: -21.36 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.59 Total: 17.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.74 -6.47 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194632801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.757 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds