Wall clock time and date at job start Mon Mar 30 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47417 * 2 1 4 4 C 1.50706 * 109.46848 * 239.99554 * 2 1 3 5 5 H 1.07999 * 120.00159 * 275.00384 * 4 2 1 6 6 C 1.37878 * 119.99547 * 95.00600 * 4 2 1 7 7 N 1.31520 * 119.99618 * 184.91232 * 6 4 2 8 8 Si 1.86801 * 120.00191 * 4.91310 * 6 4 2 9 9 H 1.48505 * 109.46981 * 84.83789 * 8 6 4 10 10 H 1.48506 * 109.47043 * 204.83327 * 8 6 4 11 11 H 1.48497 * 109.47171 * 324.83445 * 8 6 4 12 12 N 1.46496 * 109.47025 * 120.00142 * 2 1 3 13 13 C 1.34780 * 119.99747 * 274.71757 * 12 2 1 14 14 O 1.21280 * 120.00351 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99844 * 179.97438 * 13 12 2 16 16 C 1.50700 * 109.46996 * 180.02562 * 15 13 12 17 17 C 1.38250 * 119.93264 * 269.73539 * 16 15 13 18 18 C 1.38237 * 120.14143 * 179.69399 * 17 16 15 19 19 C 1.38544 * 120.03221 * 0.62679 * 18 17 16 20 20 C 1.39271 * 119.82558 * 359.64621 * 19 18 17 21 21 C 1.38241 * 119.92402 * 90.00146 * 16 15 13 22 22 O 1.36502 * 108.63702 * 179.97438 * 20 19 18 23 23 C 1.43985 * 105.48640 * 342.71642 * 22 20 19 24 24 O 1.36498 * 131.53239 * 179.64518 * 19 18 17 25 25 H 1.09003 * 109.46824 * 295.04071 * 1 2 3 26 26 H 1.09001 * 109.46717 * 55.03676 * 1 2 3 27 27 H 1.08995 * 109.47557 * 175.04004 * 1 2 3 28 28 H 0.97001 * 119.99582 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00433 * 94.99835 * 12 2 1 30 30 H 1.08997 * 109.47244 * 300.00408 * 15 13 12 31 31 H 1.09000 * 109.46610 * 60.00954 * 15 13 12 32 32 H 1.08004 * 119.92633 * 359.96556 * 17 16 15 33 33 H 1.07997 * 119.98192 * 180.27130 * 18 17 16 34 34 H 1.08000 * 119.98624 * 0.02562 * 21 16 15 35 35 H 1.08997 * 110.58083 * 268.56206 * 23 22 20 36 36 H 1.09000 * 110.57019 * 145.67994 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1354 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6134 -3.4622 8 14 2.3136 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7823 10 1 2.1059 2.3990 -3.6929 11 1 1.1988 2.3274 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 2.1524 -0.0169 2.3557 14 8 1.8684 1.1610 2.4091 15 6 2.6542 -0.7274 3.5864 16 6 2.7109 0.2425 4.7384 17 6 3.8647 0.9668 4.9741 18 6 3.9193 1.8623 6.0258 19 6 2.8213 2.0265 6.8545 20 6 1.6609 1.2927 6.6204 21 6 1.6110 0.4019 5.5604 22 8 0.7339 1.6298 7.5639 23 6 1.4746 2.2716 8.6187 24 8 2.6210 2.8237 7.9442 25 1 -0.3633 0.4350 0.9311 26 1 -0.3633 0.5889 -0.8422 27 1 -0.3634 -1.0237 -0.0888 28 1 2.9363 -0.1051 -4.2556 29 1 2.2490 -1.6318 1.1526 30 1 1.9786 -1.5461 3.8341 31 1 3.6513 -1.1242 3.3956 32 1 4.7236 0.8358 4.3326 33 1 4.8205 2.4300 6.2050 34 1 0.7126 -0.1687 5.3768 35 1 1.7846 1.5428 9.3675 36 1 0.8815 3.0636 9.0760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194632801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:49 Heat of formation + Delta-G solvation = -101.725135 kcal Electronic energy + Delta-G solvation = -20834.723612 eV Core-core repulsion = 17476.861043 eV Total energy + Delta-G solvation = -3357.862569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.11972 -40.73786 -38.86161 -37.28433 -36.62775 -34.35516 -33.33862 -31.59939 -31.28437 -28.38348 -27.30942 -26.49398 -23.97529 -23.69295 -22.34619 -21.17837 -19.31088 -18.90984 -18.50958 -18.35126 -17.58136 -17.34291 -16.95707 -16.11797 -15.86230 -15.46358 -15.12691 -14.88468 -14.82798 -14.57364 -14.41610 -14.24616 -13.99399 -13.65284 -13.37505 -13.16324 -12.96777 -12.76589 -12.69424 -12.41194 -12.04409 -11.87836 -11.76035 -11.21007 -10.84638 -10.68637 -9.82909 -9.74128 -9.01779 -8.37973 -6.43356 0.09983 0.24138 1.29499 1.34431 1.44846 1.79447 1.87624 2.27691 2.35561 2.53792 2.77757 3.08992 3.49708 3.70648 3.80966 4.04404 4.06395 4.20733 4.24890 4.30429 4.48410 4.51497 4.66143 4.70533 4.75375 4.86234 5.02924 5.07969 5.13528 5.23672 5.39921 5.42170 5.47419 5.53517 5.80723 6.12850 6.15742 6.62546 6.98846 7.23359 7.56673 8.77000 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033047 B = 0.003723 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.079437 B = 7518.519974 C = 7622.179763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.233 3.767 3 H 0.028 0.972 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.034 3.966 7 N -0.930 5.930 8 Si 0.925 3.075 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.260 1.260 12 N -0.704 5.704 13 C 0.500 3.500 14 O -0.596 6.596 15 C -0.090 4.090 16 C -0.057 4.057 17 C -0.099 4.099 18 C -0.103 4.103 19 C 0.010 3.990 20 C 0.012 3.988 21 C -0.098 4.098 22 O -0.328 6.328 23 C 0.204 3.796 24 O -0.326 6.326 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.270 0.730 29 H 0.408 0.592 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.140 0.860 35 H 0.108 0.892 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 0.477 23.276 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.129 3.871 3 H 0.045 0.955 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.167 4.167 7 N -0.569 5.569 8 Si 0.750 3.250 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.185 1.185 12 N -0.354 5.354 13 C 0.287 3.713 14 O -0.477 6.477 15 C -0.129 4.129 16 C -0.058 4.058 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.034 4.034 20 C -0.032 4.032 21 C -0.117 4.117 22 O -0.245 6.245 23 C 0.094 3.906 24 O -0.242 6.242 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.244 0.756 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.158 0.842 35 H 0.125 0.875 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.837 1.483 23.204 23.267 hybrid contribution -0.101 0.592 -0.375 0.708 sum 0.736 2.075 22.829 22.935 Atomic orbital electron populations 1.22112 0.97420 1.01237 0.99233 1.18835 0.91766 0.93113 0.83370 0.95452 1.21221 1.44011 0.94923 0.96053 0.92179 1.25576 0.93906 1.02096 0.95082 1.69977 1.46839 1.37626 1.02444 0.86090 0.79609 0.81802 0.77501 1.19881 1.20414 1.18476 1.46354 1.65281 1.14514 1.09228 1.21265 0.77424 0.87160 0.85418 1.90668 1.52939 1.18239 1.85886 1.20710 1.06592 0.97501 0.88086 1.19240 0.93166 0.98366 0.95018 1.21122 0.98999 0.95096 0.96487 1.20314 0.96628 1.00323 0.94893 1.20043 0.96331 0.94076 0.92984 1.19906 0.87832 0.99802 0.95692 1.20088 1.00014 0.97961 0.93605 1.87313 1.31659 1.75171 1.30357 1.26115 0.80088 0.96410 0.88004 1.87306 1.49399 1.50361 1.37182 0.94579 0.93789 0.92193 0.92066 0.75590 0.84876 0.84526 0.82563 0.82815 0.84188 0.87489 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 9.47 71.98 0.68 -5.33 16 2 C 0.23 10.76 2.23 44.25 0.10 10.86 16 3 H 0.03 1.40 4.72 -2.39 -0.01 1.39 16 4 C -0.52 -27.67 9.05 25.60 0.23 -27.43 16 5 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 6 C 0.03 1.88 5.47 84.65 0.46 2.34 16 7 N -0.93 -54.82 13.96 21.45 0.30 -54.52 16 8 Si 0.92 44.54 26.99 68.60 1.85 46.39 16 9 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.26 -12.41 6.82 99.48 0.68 -11.74 16 12 N -0.70 -25.82 5.07 -446.09 -2.26 -28.09 16 13 C 0.50 17.18 7.79 87.66 0.68 17.86 16 14 O -0.60 -26.21 15.69 -3.03 -0.05 -26.26 16 15 C -0.09 -1.96 5.83 29.10 0.17 -1.79 16 16 C -0.06 -1.42 4.37 -19.86 -0.09 -1.50 16 17 C -0.10 -2.30 9.69 22.27 0.22 -2.08 16 18 C -0.10 -2.41 10.06 22.34 0.22 -2.19 16 19 C 0.01 0.26 7.15 22.59 0.16 0.42 16 20 C 0.01 0.32 7.15 22.59 0.16 0.48 16 21 C -0.10 -2.58 9.71 22.34 0.22 -2.36 16 22 O -0.33 -8.27 11.40 -76.08 -0.87 -9.13 16 23 C 0.20 3.48 8.89 113.37 1.01 4.49 16 24 O -0.33 -7.81 11.40 -76.03 -0.87 -8.67 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.41 12.55 8.59 -92.71 -0.80 11.75 16 30 H 0.13 2.10 8.08 -2.39 -0.02 2.08 16 31 H 0.14 2.16 8.08 -2.39 -0.02 2.14 16 32 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 33 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -73.15 313.13 2.62 -70.53 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.28 Total: 15.99 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 4.23 Total: -6.23 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -1.96 Total: -82.61 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -1.78 Total: -44.07 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.85 Total: 46.39 kcal Total: -73.15 2.62 -70.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194632801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.195 kcal (2) G-P(sol) polarization free energy of solvation -73.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds