Wall clock time and date at job start Mon Mar 30 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34686 * 117.00277 * 2 1 4 4 O 1.21444 * 119.99778 * 0.02562 * 3 2 1 5 5 C 1.47923 * 120.00259 * 180.02562 * 3 2 1 6 6 C 1.39597 * 120.00508 * 180.02562 * 5 3 2 7 7 C 1.37819 * 119.99551 * 180.02562 * 6 5 3 8 8 C 1.39566 * 120.00158 * 0.02562 * 7 6 5 9 9 C 1.48040 * 119.99367 * 179.97438 * 8 7 6 10 10 O 1.21529 * 120.00147 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00337 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00348 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47197 * 34.99139 * 12 11 9 14 14 C 1.53005 * 109.46437 * 274.99648 * 12 11 9 15 15 C 1.50701 * 109.47260 * 155.00133 * 12 11 9 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 12 11 17 17 C 1.37871 * 119.99694 * 180.27562 * 15 12 11 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 12 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 12 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 C 1.39549 * 120.00900 * 0.23446 * 8 7 6 24 24 C 1.37812 * 120.00941 * 359.48317 * 23 8 7 25 25 H 1.09005 * 109.46628 * 299.99857 * 1 2 3 26 26 H 1.09004 * 109.47079 * 59.99194 * 1 2 3 27 27 H 1.08992 * 109.47247 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00805 * 359.97438 * 6 5 3 29 29 H 1.07994 * 120.00287 * 179.97438 * 7 6 5 30 30 H 0.97000 * 119.99698 * 359.97438 * 11 9 8 31 31 H 1.08995 * 109.47438 * 299.99560 * 14 12 11 32 32 H 1.08996 * 109.47069 * 60.00420 * 14 12 11 33 33 H 1.09004 * 109.46658 * 179.97438 * 14 12 11 34 34 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 35 35 H 1.08001 * 119.99536 * 179.74445 * 23 8 7 36 36 H 1.08001 * 120.00801 * 180.25443 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2000 0.0000 4 8 1.4021 2.2186 0.0005 5 6 3.5408 1.2774 -0.0006 6 6 4.1746 2.5212 0.0000 7 6 5.5509 2.5931 -0.0011 8 6 6.3109 1.4225 -0.0033 9 6 7.7893 1.4999 -0.0050 10 8 8.3411 2.5827 -0.0040 11 7 8.5233 0.3696 -0.0076 12 6 9.9863 0.4462 -0.0087 13 1 10.3057 1.3050 0.5818 14 6 10.4877 0.6009 -1.4460 15 6 10.5559 -0.8145 0.5890 16 1 9.8942 -1.5946 0.9355 17 6 11.9214 -0.9693 0.6992 18 7 12.7272 -0.0192 0.2775 19 14 12.6272 -2.5287 1.4473 20 1 12.8494 -3.5343 0.3774 21 1 13.9190 -2.2186 2.1110 22 1 11.6745 -3.0728 2.4479 23 6 5.6774 0.1791 -0.0093 24 6 4.3012 0.1067 -0.0023 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.5866 3.4271 0.0004 29 1 6.0414 3.5552 -0.0011 30 1 8.0829 -0.4946 -0.0080 31 1 10.1684 -0.2578 -2.0366 32 1 10.0757 1.5127 -1.8783 33 1 11.5762 0.6584 -1.4469 34 1 13.6878 -0.1280 0.3554 35 1 6.2657 -0.7266 -0.0151 36 1 3.8109 -0.8556 -0.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194720862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:31 Heat of formation + Delta-G solvation = -99.109319 kcal Electronic energy + Delta-G solvation = -20362.329605 eV Core-core repulsion = 17004.580466 eV Total energy + Delta-G solvation = -3357.749139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.80967 -39.65726 -37.95347 -36.65037 -34.92073 -32.68470 -31.71570 -31.14335 -28.92030 -27.98489 -25.33105 -24.86218 -22.74715 -21.87653 -20.88915 -19.56282 -18.45394 -17.79064 -17.23313 -16.62043 -15.97279 -15.58743 -14.97106 -14.81721 -14.39188 -14.29167 -14.02223 -13.69382 -13.65683 -13.25403 -12.59242 -12.51845 -12.42692 -12.28945 -11.73290 -11.23776 -11.15234 -11.11094 -10.98901 -10.83314 -10.78782 -10.37655 -10.28190 -9.28923 -9.19900 -9.16097 -9.08676 -8.61193 -8.01664 -6.16799 -4.26714 0.28758 1.20921 2.16801 2.38490 3.21734 3.24005 3.29031 3.30934 3.87344 3.99916 4.32053 4.41950 4.66741 4.75601 4.80006 4.86928 5.09046 5.15736 5.17619 5.22888 5.32278 5.53960 5.83764 5.94231 6.04741 6.18002 6.28388 6.60841 6.77602 6.90621 7.08401 7.34370 7.45403 7.48223 7.63225 7.84851 8.08862 8.53526 8.70102 8.97004 9.40774 10.89252 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031116 B = 0.003349 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.656544 B = 8358.425378 C = 9045.448056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.511 3.489 4 O -0.506 6.506 5 C -0.119 4.119 6 C -0.062 4.062 7 C -0.079 4.079 8 C -0.081 4.081 9 C 0.536 3.464 10 O -0.544 6.544 11 N -0.697 5.697 12 C 0.263 3.737 13 H 0.051 0.949 14 C -0.148 4.148 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.104 4.104 24 C -0.068 4.068 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.389 0.611 31 H 0.027 0.973 32 H 0.016 0.984 33 H 0.091 0.909 34 H 0.265 0.735 35 H 0.139 0.861 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.022 -1.927 -1.201 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.356 3.644 4 O -0.395 6.395 5 C -0.120 4.120 6 C -0.080 4.080 7 C -0.097 4.097 8 C -0.084 4.084 9 C 0.321 3.679 10 O -0.423 6.423 11 N -0.345 5.345 12 C 0.162 3.838 13 H 0.069 0.931 14 C -0.206 4.206 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.122 4.122 24 C -0.086 4.086 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.159 0.841 29 H 0.165 0.835 30 H 0.223 0.777 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.157 0.843 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.595 -0.842 -1.212 19.651 hybrid contribution -0.014 -1.260 0.365 1.312 sum -19.609 -2.102 -0.847 19.739 Atomic orbital electron populations 1.23296 0.75881 1.03848 1.02673 1.86546 1.23625 1.32616 1.84266 1.21309 0.89169 0.81424 0.72525 1.90825 1.66794 1.36060 1.45843 1.19184 0.88736 0.95239 1.08874 1.21221 0.94329 0.96739 0.95751 1.21287 0.92459 0.99152 0.96846 1.20691 0.94947 0.94040 0.98728 1.18259 0.85859 0.85446 0.78370 1.90741 1.72662 1.28064 1.50883 1.46539 1.10109 1.06871 1.70994 1.18828 0.72358 0.98400 0.94216 0.93095 1.22088 1.04445 0.96913 0.97187 1.21194 0.92021 1.02501 1.41745 0.91991 1.24886 0.96797 0.96863 0.95108 1.69897 1.03772 1.32582 1.45732 0.86429 0.78568 0.82723 0.79276 1.20503 1.21039 1.19809 1.21420 0.94428 0.97569 0.98829 1.21371 0.93526 0.97995 0.95750 0.91769 0.91780 0.87878 0.84074 0.83544 0.77708 0.95337 0.96530 0.89005 0.92485 0.84318 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.54 9.81 -40.46 -0.40 -3.94 16 3 C 0.51 6.11 7.90 34.70 0.27 6.38 16 4 O -0.51 -7.09 16.12 -19.22 -0.31 -7.39 16 5 C -0.12 -1.41 5.88 -104.91 -0.62 -2.03 16 6 C -0.06 -0.76 9.58 -39.23 -0.38 -1.13 16 7 C -0.08 -1.08 9.58 -39.24 -0.38 -1.46 16 8 C -0.08 -1.23 5.88 -104.89 -0.62 -1.84 16 9 C 0.54 10.58 7.74 -12.24 -0.09 10.49 16 10 O -0.54 -12.77 16.00 5.34 0.09 -12.68 16 11 N -0.70 -14.12 5.02 -55.81 -0.28 -14.40 16 12 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 13 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 14 C -0.15 -3.61 9.26 37.16 0.34 -3.26 16 15 C -0.54 -13.87 8.72 -34.44 -0.30 -14.17 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.07 1.77 5.31 -17.82 -0.09 1.67 16 18 N -0.88 -24.46 11.33 55.43 0.63 -23.83 16 19 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.10 -1.27 9.53 -39.25 -0.37 -1.64 16 24 C -0.07 -0.74 9.60 -39.23 -0.38 -1.11 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.14 1.54 7.64 -52.49 -0.40 1.14 16 29 H 0.15 2.01 7.64 -52.49 -0.40 1.61 16 30 H 0.39 6.65 6.56 -40.82 -0.27 6.38 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 2.43 6.08 -51.93 -0.32 2.12 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.14 1.47 6.39 -52.49 -0.34 1.13 16 36 H 0.14 1.21 7.60 -52.49 -0.40 0.81 16 LS Contribution 317.46 15.07 4.78 4.78 Total: -1.00 -31.48 317.46 -6.39 -37.88 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.17 Total: 4.80 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.72 Total: -0.41 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.35 Total: -38.23 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.62 Total: -24.01 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.48 -6.39 -37.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194720862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.233 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds