Wall clock time and date at job start Mon Mar 30 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34686 * 117.00277 * 2 1 4 4 O 1.21444 * 119.99778 * 0.02562 * 3 2 1 5 5 C 1.47923 * 120.00259 * 180.02562 * 3 2 1 6 6 C 1.39597 * 120.00508 * 180.02562 * 5 3 2 7 7 C 1.37819 * 119.99551 * 180.02562 * 6 5 3 8 8 C 1.39566 * 120.00158 * 0.02562 * 7 6 5 9 9 C 1.48040 * 119.99367 * 179.97438 * 8 7 6 10 10 O 1.21529 * 120.00147 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00337 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00348 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47197 * 34.99139 * 12 11 9 14 14 C 1.53005 * 109.46437 * 274.99648 * 12 11 9 15 15 C 1.50701 * 109.47260 * 155.00133 * 12 11 9 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 12 11 17 17 C 1.37871 * 119.99694 * 180.27562 * 15 12 11 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 12 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 12 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 C 1.39549 * 120.00900 * 0.23446 * 8 7 6 24 24 C 1.37812 * 120.00941 * 359.48317 * 23 8 7 25 25 H 1.09005 * 109.46628 * 299.99857 * 1 2 3 26 26 H 1.09004 * 109.47079 * 59.99194 * 1 2 3 27 27 H 1.08992 * 109.47247 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00805 * 359.97438 * 6 5 3 29 29 H 1.07994 * 120.00287 * 179.97438 * 7 6 5 30 30 H 0.97000 * 119.99698 * 359.97438 * 11 9 8 31 31 H 1.08995 * 109.47438 * 299.99560 * 14 12 11 32 32 H 1.08996 * 109.47069 * 60.00420 * 14 12 11 33 33 H 1.09004 * 109.46658 * 179.97438 * 14 12 11 34 34 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 35 35 H 1.08001 * 119.99536 * 179.74445 * 23 8 7 36 36 H 1.08001 * 120.00801 * 180.25443 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2000 0.0000 4 8 1.4021 2.2186 0.0005 5 6 3.5408 1.2774 -0.0006 6 6 4.1746 2.5212 0.0000 7 6 5.5509 2.5931 -0.0011 8 6 6.3109 1.4225 -0.0033 9 6 7.7893 1.4999 -0.0050 10 8 8.3411 2.5827 -0.0040 11 7 8.5233 0.3696 -0.0076 12 6 9.9863 0.4462 -0.0087 13 1 10.3057 1.3050 0.5818 14 6 10.4877 0.6009 -1.4460 15 6 10.5559 -0.8145 0.5890 16 1 9.8942 -1.5946 0.9355 17 6 11.9214 -0.9693 0.6992 18 7 12.7272 -0.0192 0.2775 19 14 12.6272 -2.5287 1.4473 20 1 12.8494 -3.5343 0.3774 21 1 13.9190 -2.2186 2.1110 22 1 11.6745 -3.0728 2.4479 23 6 5.6774 0.1791 -0.0093 24 6 4.3012 0.1067 -0.0023 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.5866 3.4271 0.0004 29 1 6.0414 3.5552 -0.0011 30 1 8.0829 -0.4946 -0.0080 31 1 10.1684 -0.2578 -2.0366 32 1 10.0757 1.5127 -1.8783 33 1 11.5762 0.6584 -1.4469 34 1 13.6878 -0.1280 0.3554 35 1 6.2657 -0.7266 -0.0151 36 1 3.8109 -0.8556 -0.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194720862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:31 Heat of formation + Delta-G solvation = -118.878594 kcal Electronic energy + Delta-G solvation = -20363.186865 eV Core-core repulsion = 17004.580466 eV Total energy + Delta-G solvation = -3358.606399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.75149 -40.98212 -39.21615 -37.53289 -36.77680 -34.47727 -32.94652 -32.21147 -30.63626 -28.71006 -27.34613 -26.00221 -23.82176 -23.19837 -22.22029 -21.15585 -19.66725 -19.00092 -18.18584 -17.73332 -17.42455 -17.23478 -16.44174 -15.96837 -15.86845 -15.52320 -15.28927 -14.65557 -14.61209 -14.50826 -14.35530 -13.82298 -13.55732 -13.46903 -13.00474 -12.99357 -12.85380 -12.71713 -12.29802 -12.19944 -12.13423 -11.82841 -11.76462 -11.11127 -10.93756 -10.60073 -10.29024 -10.14113 -9.78614 -8.17121 -6.34958 -0.76826 0.24613 1.13593 1.47263 1.48059 1.58508 1.59319 1.99326 2.29609 2.51916 2.78005 3.13955 3.51666 3.68780 3.83660 3.90692 4.17573 4.24743 4.32344 4.36412 4.56221 4.72978 4.75450 4.91078 4.91898 5.02010 5.08141 5.10490 5.23025 5.27308 5.42373 5.56085 5.61658 5.68401 5.88593 6.08333 6.58149 6.71676 6.86110 7.29516 7.45096 8.89409 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031116 B = 0.003349 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.656544 B = 8358.425378 C = 9045.448056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.515 3.485 4 O -0.531 6.531 5 C -0.117 4.117 6 C -0.060 4.060 7 C -0.083 4.083 8 C -0.101 4.101 9 C 0.535 3.465 10 O -0.591 6.591 11 N -0.693 5.693 12 C 0.269 3.731 13 H 0.001 0.999 14 C -0.135 4.135 15 C -0.548 4.548 16 H 0.077 0.923 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.974 3.026 20 H -0.270 1.270 21 H -0.289 1.289 22 H -0.262 1.262 23 C -0.093 4.093 24 C -0.052 4.052 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.136 0.864 28 H 0.151 0.849 29 H 0.137 0.863 30 H 0.407 0.593 31 H 0.043 0.957 32 H 0.012 0.988 33 H 0.068 0.932 34 H 0.266 0.734 35 H 0.159 0.841 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.294 -4.633 -0.974 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.360 3.640 4 O -0.422 6.422 5 C -0.118 4.118 6 C -0.078 4.078 7 C -0.102 4.102 8 C -0.104 4.104 9 C 0.322 3.678 10 O -0.474 6.474 11 N -0.342 5.342 12 C 0.166 3.834 13 H 0.019 0.981 14 C -0.194 4.194 15 C -0.586 4.586 16 H 0.095 0.905 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.798 3.202 20 H -0.196 1.196 21 H -0.215 1.215 22 H -0.186 1.186 23 C -0.112 4.112 24 C -0.070 4.070 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.154 0.846 28 H 0.169 0.831 29 H 0.155 0.845 30 H 0.244 0.756 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.176 0.824 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.917 -3.590 -0.988 22.231 hybrid contribution 0.546 -0.397 0.289 0.734 sum -21.371 -3.987 -0.700 21.751 Atomic orbital electron populations 1.23634 0.73974 1.06082 1.02747 1.86530 1.25428 1.31220 1.83590 1.21254 0.89025 0.81708 0.71964 1.90822 1.67273 1.37026 1.47050 1.19364 0.89201 0.95444 1.07786 1.21259 0.93450 0.97692 0.95379 1.21232 0.93156 0.98524 0.97283 1.20319 0.91769 0.96010 1.02313 1.18911 0.87843 0.84335 0.76664 1.90709 1.74155 1.29702 1.52833 1.46229 1.08409 1.08176 1.71343 1.18423 0.75057 0.96420 0.93479 0.98123 1.21917 1.02826 0.97334 0.97338 1.21541 0.92561 1.02832 1.41625 0.90457 1.25809 0.97277 1.00031 0.95463 1.70052 1.03999 1.34685 1.46893 0.85318 0.77519 0.78709 0.78635 1.19578 1.21469 1.18620 1.21585 0.95236 0.96811 0.97544 1.21640 0.92624 0.98951 0.93809 0.91758 0.91734 0.84599 0.83096 0.84483 0.75627 0.93769 0.96889 0.91359 0.92526 0.82385 0.80766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -5.85 9.81 -55.96 -0.55 -6.40 16 3 C 0.51 11.00 7.90 70.39 0.56 11.56 16 4 O -0.53 -13.92 16.12 20.02 0.32 -13.60 16 5 C -0.12 -2.47 5.88 -20.05 -0.12 -2.59 16 6 C -0.06 -1.38 9.58 22.50 0.22 -1.16 16 7 C -0.08 -2.28 9.58 22.49 0.22 -2.06 16 8 C -0.10 -3.00 5.88 -20.04 -0.12 -3.12 16 9 C 0.54 21.54 7.74 86.84 0.67 22.21 16 10 O -0.59 -29.15 16.00 -3.81 -0.06 -29.21 16 11 N -0.69 -28.08 5.02 -448.79 -2.25 -30.33 16 12 C 0.27 13.75 2.56 44.25 0.11 13.86 16 13 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 14 C -0.14 -6.77 9.26 71.98 0.67 -6.11 16 15 C -0.55 -28.20 8.72 25.60 0.22 -27.98 16 16 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 17 C 0.01 0.75 5.31 84.65 0.45 1.20 16 18 N -0.92 -52.01 11.33 21.45 0.24 -51.77 16 19 Si 0.97 40.97 29.54 68.60 2.03 43.00 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 C -0.09 -2.04 9.53 22.49 0.21 -1.82 16 24 C -0.05 -0.95 9.60 22.50 0.22 -0.73 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.15 3.15 7.64 -2.91 -0.02 3.13 16 29 H 0.14 3.95 7.64 -2.91 -0.02 3.93 16 30 H 0.41 13.30 6.56 -92.71 -0.61 12.69 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 3.74 6.08 -2.38 -0.01 3.73 16 34 H 0.27 14.25 8.31 -92.71 -0.77 13.47 16 35 H 0.16 2.79 6.39 -2.91 -0.02 2.77 16 36 H 0.17 2.07 7.60 -2.91 -0.02 2.05 16 Total: -1.00 -69.93 317.46 4.74 -65.19 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.50 Total: 18.35 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 4.50 Total: 4.77 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -2.01 Total: -82.10 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -0.29 Total: -49.21 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -69.93 4.74 -65.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194720862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.685 kcal (2) G-P(sol) polarization free energy of solvation -69.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds