Wall clock time and date at job start Mon Mar 30 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34709 * 116.99791 * 2 1 4 4 O 1.21468 * 120.00251 * 359.97438 * 3 2 1 5 5 C 1.47745 * 119.99722 * 179.97438 * 3 2 1 6 6 C 1.39753 * 120.07979 * 359.97438 * 5 3 2 7 7 C 1.38044 * 120.13875 * 179.97438 * 6 5 3 8 8 C 1.38100 * 120.30276 * 359.75954 * 7 6 5 9 9 C 1.39677 * 120.15609 * 0.52187 * 8 7 6 10 10 C 1.47859 * 120.07149 * 179.73999 * 9 8 7 11 11 O 1.21554 * 119.99791 * 179.72511 * 10 9 8 12 12 N 1.34776 * 120.00141 * 359.71794 * 10 9 8 13 13 C 1.46495 * 120.00020 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.47151 * 325.00020 * 13 12 10 15 15 C 1.53007 * 109.47408 * 84.99910 * 13 12 10 16 16 C 1.50698 * 109.47215 * 205.00231 * 13 12 10 17 17 H 1.07998 * 120.00246 * 325.86999 * 16 13 12 18 18 C 1.37884 * 120.00344 * 145.87194 * 16 13 12 19 19 N 1.31509 * 119.99984 * 177.63821 * 18 16 13 20 20 Si 1.86802 * 119.99604 * 357.63544 * 18 16 13 21 21 H 1.48503 * 109.47051 * 274.92178 * 20 18 16 22 22 H 1.48495 * 109.47203 * 34.92166 * 20 18 16 23 23 H 1.48502 * 109.47092 * 154.92682 * 20 18 16 24 24 C 1.39316 * 119.85493 * 359.45459 * 9 8 7 25 25 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47590 * 300.00534 * 1 2 3 27 27 H 1.09006 * 109.46959 * 60.00179 * 1 2 3 28 28 H 1.07998 * 119.92944 * 0.02562 * 6 5 3 29 29 H 1.08004 * 119.84671 * 180.02562 * 7 6 5 30 30 H 1.08001 * 119.92792 * 180.25566 * 8 7 6 31 31 H 0.97004 * 120.00024 * 0.02562 * 12 10 9 32 32 H 1.08998 * 109.46973 * 296.14057 * 15 13 12 33 33 H 1.08997 * 109.46643 * 56.13715 * 15 13 12 34 34 H 1.09001 * 109.46913 * 176.13554 * 15 13 12 35 35 H 0.97006 * 119.99900 * 179.97438 * 19 18 16 36 36 H 1.07997 * 120.15042 * 180.25118 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3017 0.1066 0.0017 7 6 5.6803 0.1774 0.0017 8 6 6.3150 1.4039 -0.0044 9 6 5.5650 2.5821 0.0004 10 6 6.2465 3.8943 -0.0003 11 8 5.5925 4.9188 -0.0012 12 7 7.5930 3.9543 0.0001 13 6 8.2682 5.2544 0.0000 14 1 7.6888 5.9647 -0.5899 15 6 8.3912 5.7654 1.4370 16 6 9.6427 5.1065 -0.6000 17 1 10.2030 4.1958 -0.4482 18 6 10.1849 6.1338 -1.3427 19 7 11.4025 6.0234 -1.8272 20 14 9.1900 7.6825 -1.6608 21 1 8.3199 7.4770 -2.8465 22 1 8.3479 7.9821 -0.4749 23 1 10.1112 8.8194 -1.9139 24 6 4.1733 2.5183 -0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.8115 -0.8558 0.0017 29 1 6.2652 -0.7306 0.0021 30 1 7.3940 1.4522 -0.0086 31 1 8.1149 3.1367 0.0006 32 1 7.3964 5.9376 1.8477 33 1 8.9111 5.0235 2.0431 34 1 8.9538 6.6990 1.4436 35 1 11.7839 6.7460 -2.3500 36 1 3.5886 3.4264 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194747291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:32 Heat of formation + Delta-G solvation = -121.566753 kcal Electronic energy + Delta-G solvation = -20562.054264 eV Core-core repulsion = 17203.331298 eV Total energy + Delta-G solvation = -3358.722966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78400 -40.99250 -39.23830 -37.56206 -36.80208 -34.50769 -33.16105 -32.23056 -31.16305 -28.67361 -27.34058 -25.38245 -25.00442 -22.58669 -22.24753 -21.26887 -19.96548 -18.70881 -18.33744 -17.48908 -17.45680 -17.28670 -17.01983 -16.09938 -15.96460 -15.59471 -15.20036 -14.82351 -14.64810 -14.56215 -14.47851 -14.27098 -13.62120 -13.25092 -13.10190 -13.08596 -12.99113 -12.83306 -12.45953 -12.42762 -11.89530 -11.86353 -11.74495 -11.24230 -11.00044 -10.85958 -10.27849 -10.17583 -9.83913 -8.40341 -6.46420 -0.52159 -0.10603 1.27392 1.29068 1.33344 1.43736 1.54364 1.93458 2.25703 2.32686 2.77658 3.01660 3.55643 3.69644 3.78846 3.99704 4.07961 4.29045 4.30852 4.32872 4.40332 4.58628 4.71874 4.72001 4.79641 4.83617 5.04047 5.11139 5.12761 5.22311 5.28544 5.33651 5.43395 5.64377 5.69380 6.10080 6.57374 6.57947 6.79693 7.18363 7.34075 8.74205 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032383 B = 0.003709 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.440905 B = 7547.852806 C = 7988.826944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.513 3.487 4 O -0.541 6.541 5 C -0.149 4.149 6 C -0.023 4.023 7 C -0.120 4.120 8 C -0.043 4.043 9 C -0.154 4.154 10 C 0.541 3.459 11 O -0.596 6.596 12 N -0.692 5.692 13 C 0.233 3.767 14 H 0.027 0.973 15 C -0.143 4.143 16 C -0.525 4.525 17 H 0.064 0.936 18 C 0.037 3.963 19 N -0.927 5.927 20 Si 0.921 3.079 21 H -0.277 1.277 22 H -0.257 1.257 23 H -0.276 1.276 24 C -0.017 4.017 25 H 0.141 0.859 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.177 0.823 29 H 0.185 0.815 30 H 0.156 0.844 31 H 0.408 0.592 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.271 0.729 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.799 -18.556 4.565 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.359 3.641 4 O -0.432 6.432 5 C -0.150 4.150 6 C -0.041 4.041 7 C -0.137 4.137 8 C -0.062 4.062 9 C -0.158 4.158 10 C 0.329 3.671 11 O -0.479 6.479 12 N -0.341 5.341 13 C 0.130 3.870 14 H 0.045 0.955 15 C -0.202 4.202 16 C -0.563 4.563 17 H 0.082 0.918 18 C -0.164 4.164 19 N -0.565 5.565 20 Si 0.746 3.254 21 H -0.203 1.203 22 H -0.181 1.181 23 H -0.201 1.201 24 C -0.037 4.037 25 H 0.159 0.841 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.194 0.806 29 H 0.202 0.798 30 H 0.173 0.827 31 H 0.245 0.755 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.291 -17.450 4.462 24.285 hybrid contribution -0.196 1.235 -0.410 1.316 sum -16.487 -16.215 4.052 23.477 Atomic orbital electron populations 1.23636 0.74100 1.06190 1.02549 1.86507 1.25296 1.30774 1.83754 1.21301 0.89250 0.81701 0.71848 1.90852 1.67522 1.37440 1.47399 1.19014 0.89215 0.94880 1.11908 1.22036 0.94244 0.97904 0.89910 1.21606 0.94166 0.98504 0.99468 1.22006 1.01537 0.91268 0.91345 1.19813 0.93646 0.93390 1.08912 1.18804 0.82855 0.89201 0.76257 1.90709 1.66285 1.37633 1.53308 1.46263 1.05145 1.10933 1.71744 1.18926 0.91251 0.82472 0.94390 0.95468 1.22140 0.99326 1.01113 0.97587 1.21153 0.99402 1.03402 1.32378 0.91787 1.25527 0.95510 1.00892 0.94476 1.69952 1.15892 1.34586 1.36067 0.86151 0.79127 0.80487 0.79658 1.20316 1.18069 1.20085 1.21173 0.93466 0.97507 0.91553 0.84057 0.92013 0.92116 0.80588 0.79755 0.82684 0.75472 0.94830 0.91786 0.93018 0.91954 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.26 9.81 -56.18 -0.55 -6.82 16 3 C 0.51 12.87 7.90 70.34 0.56 13.42 16 4 O -0.54 -17.56 16.13 19.94 0.32 -17.24 16 5 C -0.15 -3.55 5.87 -20.13 -0.12 -3.66 16 6 C -0.02 -0.35 9.61 22.59 0.22 -0.13 16 7 C -0.12 -1.62 10.02 22.19 0.22 -1.39 16 8 C -0.04 -0.88 9.54 22.58 0.22 -0.66 16 9 C -0.15 -4.67 5.87 -20.12 -0.12 -4.79 16 10 C 0.54 21.59 7.74 86.79 0.67 22.26 16 11 O -0.60 -29.04 16.00 -3.89 -0.06 -29.10 16 12 N -0.69 -27.31 5.02 -448.96 -2.25 -29.56 16 13 C 0.23 11.03 2.16 44.25 0.10 11.13 16 14 H 0.03 1.43 4.89 -2.38 -0.01 1.42 16 15 C -0.14 -6.15 9.44 71.98 0.68 -5.47 16 16 C -0.53 -27.83 9.05 25.60 0.23 -27.60 16 17 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 18 C 0.04 2.05 5.47 84.66 0.46 2.51 16 19 N -0.93 -54.39 13.96 21.45 0.30 -54.09 16 20 Si 0.92 44.67 26.74 68.60 1.83 46.51 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 22 H -0.26 -12.22 6.87 99.48 0.68 -11.54 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 24 C -0.02 -0.54 9.14 22.80 0.21 -0.33 16 25 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.18 1.47 7.60 -2.91 -0.02 1.45 16 29 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 30 H 0.16 2.61 6.39 -2.91 -0.02 2.59 16 31 H 0.41 13.34 6.62 -92.71 -0.61 12.73 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.05 2.24 7.92 -2.39 -0.02 2.22 16 35 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 36 H 0.12 4.30 7.23 -2.91 -0.02 4.28 16 Total: -1.00 -75.19 316.87 4.59 -70.61 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.48 Total: 12.87 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.52 Total: 6.83 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -1.95 Total: -83.65 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.29 Total: -53.15 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.83 Total: 46.51 kcal Total: -75.19 4.59 -70.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194747291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.961 kcal (2) G-P(sol) polarization free energy of solvation -75.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds